Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003401

Physical Location & Seq

Genomic Coordinates Reverse (-)

30669818 .. 30670770

Gene Structure 953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19117

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTTTGCAGATAAGGCCAGCCATGGTCGTCGAAGCTCCAATCCCAGATCGATATCAACGCTCCTCCGCGACTACTCCCCGCCGACTCCTTCGACGTTGTGGAGAAGGAAGAAGACAAATTTCCTGATGGACTATTCTTTATATAAAAACCCCTCAGTCATGCTCTCCTCTATGAATCTCTCTCTTTGTGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATGAGGAAGTGCTAGTCAGGATGGAGAAGAAGAAGTATCCGATAGGATCCGAGCACTACACGCTCTACATGGAGGTCGGCCAAGGTGTAAGCGCCTCTGTACACCGTGCTGTATGTAAGCCCTTTAATGAGGATGTCGCCATCCAAATCCTCGACTTCGAAAGAGATAATTGTGATCTAGTACCAAATTCAATGCTTTTCTTTATTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

144

Amino Acids

16.46

Weight (kDa)

8.79

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79640 AT1G79640 AT1G79640 AT1G79640 AT1G79640 AT1G79640
fragaria_vesca	FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050
malus_domestica	MD09G1229900.v1.1 MD17G1228700.v1.1
prunus_persica	Prupe.3G106100_v2.0.a1 Prupe.3G106100_v2.0.a1
pyrus_communis	pycom09g14840 pycom17g23120
rosa_chinensis	RchiOBHm_Chr2g0131781 RchiOBHm_Chr7g0213591
rosa_laevigata	RLG00000019211
rosa_multiflora	Rmu_sc0002589.1_g000040 Rmu_sc0009880.1_g000006
rosa_roxburghii	Rroxscaffold_2G00112600
rosa_rugosa	Rorug02G0299500 Rorug02G0299600 Rorug02G0299700 Rorug02G0299800
rosa_samantha	Rh1BG109800 Rh2AG352000 Rh2BG359100 Rh2CG337600 Rh2DG376500 Rh5CG277400
rosa_wichuraiana	Rw2G028610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	69
AciI	CCGC	2 cut(s)	67, 80
AclWI	GGATC	2 cut(s)	264, 277
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	2 cut(s)	118, 409
AfaI	GTAC	2 cut(s)	324, 405
AgsI	TTSAA	1 cut(s)	414
AluBI	AGCT	1 cut(s)	36
AluI	AGCT	1 cut(s)	36
Alw21I	GWGCWC	1 cut(s)	279
AlwI	GGATC	2 cut(s)	264, 277
AoxI	GGCC	2 cut(s)	15, 301
ApoI	RAATTY	2 cut(s)	118, 409
AspLEI	GCGC	1 cut(s)	317
AsuII	TTCGAA	1 cut(s)	381
BamHI	GGATCC	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	279
BccI	CCATC	3 cut(s)	121, 238, 371
BciVI	GTATCC	1 cut(s)	270
BfaI	CTAG	2 cut(s)	236, 401
BfoI	RGCGCY	1 cut(s)	318
BfuI	GTATCC	1 cut(s)	270
BmiI	GGNNCC	1 cut(s)	271
BpiI	GAAGAC	1 cut(s)	119
Bpu14I	TTCGAA	1 cut(s)	381
Bsa29I	ATCGAT	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	52
BsaJI	CCNNGG	2 cut(s)	22, 304
Bse8I	GATNNNNATC	1 cut(s)	52
BseCI	ATCGAT	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	22, 304
BseGI	GGATG	3 cut(s)	249, 361, 363
BseJI	GATNNNNATC	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	168
BseRI	GAGGAG	2 cut(s)	53, 157
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	2 cut(s)	17, 303
BshVI	ATCGAT	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	279
BsnI	GGCC	2 cut(s)	17, 303
Bsp119I	TTCGAA	1 cut(s)	381
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp1407I	TGTACA	1 cut(s)	322
Bsp143I	GATC	3 cut(s)	47, 269, 397
Bsp19I	CCATGG	1 cut(s)	22
BspACI	CCGC	2 cut(s)	67, 80
BspANI	GGCC	2 cut(s)	17, 303
BspCNI	CTCAG	1 cut(s)	167
BspDI	ATCGAT	1 cut(s)	50
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	271
BspPI	GGATC	2 cut(s)	264, 277
BspT104I	TTCGAA	1 cut(s)	381
BsrGI	TGTACA	1 cut(s)	322
BssECI	CCNNGG	2 cut(s)	22, 304
BssMI	GATC	3 cut(s)	47, 269, 397
BssT1I	CCWWGG	2 cut(s)	22, 304
Bst4CI	ACNGT	1 cut(s)	329
BstAUI	TGTACA	1 cut(s)	322
BstBI	TTCGAA	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	1 cut(s)	154
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	3 cut(s)	249, 361, 363
BstFNI	CGCG	1 cut(s)	69
BstH2I	RGCGCY	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	317
BstKTI	GATC	3 cut(s)	50, 272, 400
BstMBI	GATC	3 cut(s)	47, 269, 397
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 283
BstUI	CGCG	1 cut(s)	69
BstV2I	GAAGAC	1 cut(s)	119
BstX2I	RGATCY	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	269
Bsu15I	ATCGAT	1 cut(s)	50
BsuI	GTATCC	1 cut(s)	270
BsuRI	GGCC	2 cut(s)	17, 303
BsuTUI	ATCGAT	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	3 cut(s)	249, 361, 363
Cac8I	GCNNGC	1 cut(s)	19
CfoI	GCGC	1 cut(s)	317
ClaI	ATCGAT	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	323, 404
CviAII	CATG	3 cut(s)	23, 160, 292
CviJI	RGCY	6 cut(s)	17, 21, 36, 192, 303, 343
CviKI_1	RGCY	6 cut(s)	17, 21, 36, 192, 303, 343
CviQI	GTAC	2 cut(s)	323, 404
DdeI	CTNAG	1 cut(s)	154
DpnI	GATC	3 cut(s)	49, 271, 399
DpnII	GATC	3 cut(s)	47, 269, 397
EaeI	YGGCCR	1 cut(s)	301
Eco130I	CCWWGG	2 cut(s)	22, 304
Eco32I	GATATC	1 cut(s)	54
EcoRV	GATATC	1 cut(s)	54
EcoT14I	CCWWGG	2 cut(s)	22, 304
ErhI	CCWWGG	2 cut(s)	22, 304
FaeI	CATG	3 cut(s)	26, 163, 295
FaiI	YATR	8 cut(s)	24, 142, 144, 161, 173, 225, 293, 337
FatI	CATG	3 cut(s)	22, 159, 291
FauI	CCCGC	1 cut(s)	87
FokI	GGATG	3 cut(s)	256, 350, 368
FspBI	CTAG	2 cut(s)	236, 401
GlaI	GCGC	1 cut(s)	316
HaeII	RGCGCY	1 cut(s)	318
HaeIII	GGCC	2 cut(s)	17, 303
HhaI	GCGC	1 cut(s)	317
Hin1II	CATG	3 cut(s)	26, 163, 295
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HinfI	GANTC	2 cut(s)	85, 175
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	2 cut(s)	264, 274
Hpy188III	TCNNGA	2 cut(s)	124, 241
Hpy8I	GTNNAC	1 cut(s)	325
Hpy99I	CGWCG	2 cut(s)	33, 97
HpyAV	CCTTC	2 cut(s)	99, 99
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 283
HpyF3I	CTNAG	1 cut(s)	154
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	3 cut(s)	26, 163, 295
HspAI	GCGC	1 cut(s)	315
Kzo9I	GATC	3 cut(s)	47, 269, 397
LmnI	GCTCC	2 cut(s)	41, 66
LpnPI	CCDG	4 cut(s)	31, 58, 137, 226
MaeI	CTAG	2 cut(s)	236, 401
MaeII	ACGT	1 cut(s)	95
MalI	GATC	3 cut(s)	49, 271, 399
MboI	GATC	3 cut(s)	47, 269, 397
MboII	GAAGA	4 cut(s)	121, 124, 262, 265
MflI	RGATCY	1 cut(s)	269
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	3 cut(s)	118, 391, 409
MlyI	GAGTC	1 cut(s)	79
MnlI	CCTC	8 cut(s)	74, 163, 178, 220, 289, 328, 346, 383
MseI	TTAA	1 cut(s)	348
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	2 cut(s)	14, 283
NcoI	CCATGG	1 cut(s)	22
NdeII	GATC	3 cut(s)	47, 269, 397
NlaIII	CATG	3 cut(s)	26, 163, 295
NlaIV	GGNNCC	1 cut(s)	271
NspV	TTCGAA	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	175
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	269
RsaI	GTAC	2 cut(s)	324, 405
RsaNI	GTAC	2 cut(s)	323, 404
SaqAI	TTAA	1 cut(s)	348
Sau3AI	GATC	3 cut(s)	47, 269, 397
SchI	GAGTC	1 cut(s)	79
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	4 cut(s)	38, 98, 300, 310
SfuI	TTCGAA	1 cut(s)	381
Sse9I	AATT	3 cut(s)	118, 391, 409
SsiI	CCGC	2 cut(s)	67, 80
SspMI	CTAG	2 cut(s)	236, 401
StyI	CCWWGG	2 cut(s)	22, 304
TaaI	ACNGT	1 cut(s)	329
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	5 cut(s)	31, 50, 92, 375, 381
TasI	AATT	3 cut(s)	118, 391, 409
TatI	WGTACW	1 cut(s)	322
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TspDTI	ATGAA	1 cut(s)	188
XapI	RAATTY	2 cut(s)	118, 409
XspI	CTAG	2 cut(s)	236, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.