Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003401

Physical Location & Seq

Genomic Coordinates Forward (+)

30164500 .. 30167329

Gene Structure 2830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG277400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGAGAAGAAGAAGTATCCGATAGGACCCGAGCACTACACACTCTACGAGGAGGTCGGCCAAGGTGTAAGCACCTCTGTACACCATGCTGTATGTAAGACCTTCAATGAGGTTGTTGCCATCAAAATCCTCGACTTCGAAAGAGACATTTGTGATCTGAATAATATATCACATGAAGCGCAAACAATGATCTTAGTTGATCGTCTTAATGTCCTCAAATCGCATTGCTCCTTTGTTAGTGATCATCATTTATGGGTTGTCAGTCTTCACATTTTGAAAGCTGCATACGTACCCAGATGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

101

Amino Acids

11.69

Weight (kDa)

6.42

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	13 - 87	9e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79640 AT1G79640 AT1G79640 AT1G79640 AT1G79640 AT1G79640
fragaria_vesca	FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050
malus_domestica	MD09G1229900.v1.1 MD17G1228700.v1.1
prunus_persica	Prupe.3G106100_v2.0.a1 Prupe.3G106100_v2.0.a1
pyrus_communis	pycom09g14840 pycom17g23120
rosa_chinensis	RchiOBHm_Chr2g0131781 RchiOBHm_Chr7g0213591
rosa_laevigata	RLG00000019211
rosa_multiflora	Rmu_sc0002589.1_g000040 Rmu_sc0009880.1_g000006
rosa_roxburghii	Rroxscaffold_2G00112600
rosa_rugosa	Rorug02G0299500 Rorug02G0299600 Rorug02G0299700 Rorug02G0299800
rosa_samantha	Rh1BG109800 Rh2AG352000 Rh2BG359100 Rh2CG337600 Rh2DG376500 Rh5CG277400
rosa_wichuraiana	Rw2G028610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	58
AfaI	GTAC	2 cut(s)	81, 291
AgsI	TTSAA	2 cut(s)	106, 277
AluBI	AGCT	1 cut(s)	281
AluI	AGCT	1 cut(s)	281
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	1 cut(s)	138
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	1 cut(s)	26
AsuII	TTCGAA	1 cut(s)	138
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	2 cut(s)	128, 291
BciVI	GTATCC	1 cut(s)	27
BclI	TGATCA	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	138
BfuI	GTATCC	1 cut(s)	27
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
Bme18I	GGWCC	1 cut(s)	26
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	257
Bpu14I	TTCGAA	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	289
BsaJI	CCNNGG	1 cut(s)	61
Bse3DI	GCAATG	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	61
BseMI	GCAATG	1 cut(s)	223
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	268
BshFI	GGCC	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	36
BsiHKCI	CYCGRG	1 cut(s)	29
BsmAI	GTCTC	1 cut(s)	138
BsnI	GGCC	1 cut(s)	60
BsoBI	CYCGRG	1 cut(s)	29
Bsp119I	TTCGAA	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp1407I	TGTACA	1 cut(s)	79
Bsp143I	GATC	4 cut(s)	154, 189, 199, 241
BspANI	GGCC	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	28
BspT104I	TTCGAA	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	223
BsrGI	TGTACA	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	4 cut(s)	154, 189, 199, 241
BssT1I	CCWWGG	1 cut(s)	61
BstAUI	TGTACA	1 cut(s)	79
BstBAI	YACGTR	1 cut(s)	289
BstBI	TTCGAA	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	4 cut(s)	157, 192, 202, 244
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	4 cut(s)	154, 189, 199, 241
BstSNI	TACGTA	1 cut(s)	289
BstV1I	GCAGC	1 cut(s)	268
BstV2I	GAAGAC	1 cut(s)	257
BsuI	GTATCC	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	60
CfoI	GCGC	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	26
Csp6I	GTAC	2 cut(s)	80, 290
CviAII	CATG	2 cut(s)	86, 173
CviJI	RGCY	2 cut(s)	60, 281
CviKI_1	RGCY	2 cut(s)	60, 281
CviQI	GTAC	2 cut(s)	80, 290
DdeI	CTNAG	1 cut(s)	193
DpnI	GATC	4 cut(s)	156, 191, 201, 243
DpnII	GATC	4 cut(s)	154, 189, 199, 241
EaeI	YGGCCR	1 cut(s)	58
Eco105I	TACGTA	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	26
Eco88I	CYCGRG	1 cut(s)	29
EcoO109I	RGGNCCY	1 cut(s)	26
EcoT14I	CCWWGG	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	2 cut(s)	89, 176
FaiI	YATR	6 cut(s)	87, 94, 167, 174, 253, 286
FatI	CATG	2 cut(s)	85, 172
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	1 cut(s)	282
Fsp4HI	GCNGC	1 cut(s)	282
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	60
HhaI	GCGC	1 cut(s)	181
Hin1II	CATG	2 cut(s)	89, 176
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	21, 159
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	1 cut(s)	284
HpyF3I	CTNAG	1 cut(s)	193
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	89, 176
HspAI	GCGC	1 cut(s)	179
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	4 cut(s)	154, 189, 199, 241
LmnI	GCTCC	1 cut(s)	233
Lsp1109I	GCAGC	1 cut(s)	268
MaeII	ACGT	1 cut(s)	288
MalI	GATC	4 cut(s)	156, 191, 201, 243
MboI	GATC	4 cut(s)	154, 189, 199, 241
MboII	GAAGA	3 cut(s)	19, 22, 257
MhlI	GDGCHC	1 cut(s)	36
MnlI	CCTC	6 cut(s)	43, 46, 85, 103, 140, 224
MseI	TTAA	1 cut(s)	207
NdeII	GATC	4 cut(s)	154, 189, 199, 241
NlaIII	CATG	2 cut(s)	89, 176
NlaIV	GGNNCC	1 cut(s)	28
NspV	TTCGAA	1 cut(s)	138
PkrI	GCNGC	1 cut(s)	283
Ppu21I	YACGTR	1 cut(s)	289
PpuMI	RGGWCCY	1 cut(s)	26
Psp5II	RGGWCCY	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	26
PspPPI	RGGWCCY	1 cut(s)	26
RsaI	GTAC	2 cut(s)	81, 291
RsaNI	GTAC	2 cut(s)	80, 290
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	4 cut(s)	154, 189, 199, 241
Sau96I	GGNCC	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	7 cut(s)	57, 67, 77, 104, 114, 283, 291
SfuI	TTCGAA	1 cut(s)	138
SgeI	CNNG	7 cut(s)	41, 43, 61, 74, 98, 143, 185
SinI	GGWCC	1 cut(s)	26
SnaBI	TACGTA	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	61
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	2 cut(s)	132, 138
TatI	WGTACW	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseI	GCWGC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.