Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003401

Physical Location & Seq

Genomic Coordinates Forward (+)

18888806 .. 18894058

Gene Structure 5253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG109800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGAGAAGAAGAAGTATCCGATAGGACCCGAGCACTACACACTCTACGAGGAGGTCGGCCAAGGTGTAAGCGCCTCTGTACACCATGCTGTATGTAAGCCCTTCAATGAGGTTGTTACCATCAAAATCCTCTACTTCGAAAGAGACATTTGTGATCTGGAAAATAAGGCCAAAGATGACTCTTTTAGTCTTTGTCAAGATTGTGTTGCTCGACCTGTTAGAGTTGAAAAATACAAGGCTGCTAATCAACAGACAATATTTACATTGGAAGAGGTATGTTTAGAGTCTCGCTACGTTACCTGTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

102

Amino Acids

11.74

Weight (kDa)

5.59

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79640 AT1G79640 AT1G79640 AT1G79640 AT1G79640 AT1G79640
fragaria_vesca	FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050
malus_domestica	MD09G1229900.v1.1 MD17G1228700.v1.1
prunus_persica	Prupe.3G106100_v2.0.a1 Prupe.3G106100_v2.0.a1
pyrus_communis	pycom09g14840 pycom17g23120
rosa_chinensis	RchiOBHm_Chr2g0131781 RchiOBHm_Chr7g0213591
rosa_laevigata	RLG00000019211
rosa_multiflora	Rmu_sc0002589.1_g000040 Rmu_sc0009880.1_g000006
rosa_roxburghii	Rroxscaffold_2G00112600
rosa_rugosa	Rorug02G0299500 Rorug02G0299600 Rorug02G0299700 Rorug02G0299800
rosa_samantha	Rh1BG109800 Rh2AG352000 Rh2BG359100 Rh2CG337600 Rh2DG376500 Rh5CG277400
rosa_wichuraiana	Rw2G028610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	58
AfaI	GTAC	1 cut(s)	81
AgsI	TTSAA	2 cut(s)	106, 227
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	2 cut(s)	138, 291
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	2 cut(s)	58, 168
ApeKI	GCWGC	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	26
AsuII	TTCGAA	1 cut(s)	138
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	1 cut(s)	128
BciVI	GTATCC	1 cut(s)	27
BcoDI	GTCTC	2 cut(s)	138, 291
BfoI	RGCGCY	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	27
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme18I	GGWCC	1 cut(s)	26
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	28
Bpu14I	TTCGAA	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	61
BseDI	CCNNGG	1 cut(s)	61
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	226
BshFI	GGCC	2 cut(s)	60, 170
BsiHKAI	GWGCWC	1 cut(s)	36
BsiHKCI	CYCGRG	1 cut(s)	29
BsmAI	GTCTC	2 cut(s)	138, 291
BsnI	GGCC	2 cut(s)	60, 170
BsoBI	CYCGRG	1 cut(s)	29
Bsp119I	TTCGAA	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp1407I	TGTACA	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	154
BspANI	GGCC	2 cut(s)	60, 170
BspLI	GGNNCC	1 cut(s)	28
BspT104I	TTCGAA	1 cut(s)	138
BsrGI	TGTACA	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	1 cut(s)	154
BssT1I	CCWWGG	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	264
BstAUI	TGTACA	1 cut(s)	79
BstBI	TTCGAA	1 cut(s)	138
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	1 cut(s)	157
BstMAI	GTCTC	2 cut(s)	138, 291
BstMBI	GATC	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	226
BsuI	GTATCC	1 cut(s)	27
BsuRI	GGCC	2 cut(s)	60, 170
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	4 cut(s)	60, 100, 170, 239
CviKI_1	RGCY	4 cut(s)	60, 100, 170, 239
CviQI	GTAC	1 cut(s)	80
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	26
Eco88I	CYCGRG	1 cut(s)	29
EcoO109I	RGGNCCY	1 cut(s)	26
EcoT14I	CCWWGG	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	1 cut(s)	89
FaiI	YATR	4 cut(s)	87, 94, 277, 307
FatI	CATG	1 cut(s)	85
Fnu4HI	GCNGC	1 cut(s)	240
Fsp4HI	GCNGC	1 cut(s)	240
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	1 cut(s)	240
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	60, 170
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	89
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HinfI	GANTC	2 cut(s)	179, 284
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	2 cut(s)	158, 197
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	294
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	1 cut(s)	89
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	154
LpnPI	CCDG	2 cut(s)	143, 228
Lsp1109I	GCAGC	1 cut(s)	226
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	2 cut(s)	115, 295
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	3 cut(s)	19, 22, 281
MhlI	GDGCHC	1 cut(s)	36
MlyI	GAGTC	2 cut(s)	173, 293
MnlI	CCTC	6 cut(s)	43, 46, 85, 103, 140, 265
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	1 cut(s)	28
NspV	TTCGAA	1 cut(s)	138
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	2 cut(s)	173, 292
PpsI	GAGTC	2 cut(s)	173, 292
PpuMI	RGGWCCY	1 cut(s)	26
Psp5II	RGGWCCY	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	26
PspPPI	RGGWCCY	1 cut(s)	26
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	1 cut(s)	26
SchI	GAGTC	2 cut(s)	173, 293
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	7 cut(s)	57, 67, 114, 217, 276, 297, 302
SfuI	TTCGAA	1 cut(s)	138
SinI	GGWCC	1 cut(s)	26
SspI	AATATT	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	61
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	2 cut(s)	138, 211
TatI	WGTACW	1 cut(s)	79
TseI	GCWGC	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.