Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002589.1

Orthogroup ID

OG0003401

Physical Location & Seq

Genomic Coordinates Reverse (-)

210061 .. 212411

Gene Structure 2351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002589.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

atggaaaagaagaaatatccgataggacccgggcactacacgctctacgaggaggtcggccaaggtgtaagcgcctccgtacaccgtgctgtatgtaagcccttcaatgaggttgttgccatcaaaatcctcgacttcgaaagagataattgtgatctgaataatatatcacgtgaagcgcaaacaatgatcttagttgatcatcctaatgtcctcaaatcgcattgttcctttgttagtgatcataatttgtgggttgtcatgccattcatggccgggggttcttgtcttcacattttgaaagctgcataccctgatggttttgaggaagtagttatagccactatattacgcgagattttgaagggtttagagtatctgcatcatcatggccacattcatcgagatgtcaaagctgggaatattttgattgattcacgcggtgcaatcaaacttggagactttggcgtctctgcttgcctttttgataacggtgataggcaacggatgcggaatacatttgtgggaacaccttgttggatggcaccagaggttatggagcaactacatggttatgatttcaaggctgacatctggtcttttggtataactgcattggagcttgcccatgggcatgctcctttctcaaagtatcctccaatgaaggtgcttatcaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

226

Amino Acids

25.37

Weight (kDa)

6.38

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79640 AT1G79640 AT1G79640 AT1G79640 AT1G79640 AT1G79640
fragaria_vesca	FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050
malus_domestica	MD09G1229900.v1.1 MD17G1228700.v1.1
prunus_persica	Prupe.3G106100_v2.0.a1 Prupe.3G106100_v2.0.a1
pyrus_communis	pycom09g14840 pycom17g23120
rosa_chinensis	RchiOBHm_Chr2g0131781 RchiOBHm_Chr7g0213591
rosa_laevigata	RLG00000019211
rosa_multiflora	Rmu_sc0002589.1_g000040 Rmu_sc0009880.1_g000006
rosa_roxburghii	Rroxscaffold_2G00112600
rosa_rugosa	Rorug02G0299500 Rorug02G0299600 Rorug02G0299700 Rorug02G0299800
rosa_samantha	Rh1BG109800 Rh2AG352000 Rh2BG359100 Rh2CG337600 Rh2DG376500 Rh5CG277400
rosa_wichuraiana	Rw2G028610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	467
AccB1I	GGYRCC	1 cut(s)	544
AccII	CGCG	2 cut(s)	354, 441
AciI	CCGC	2 cut(s)	441, 511
AcoI	YGGCCR	3 cut(s)	58, 273, 391
AcvI	CACGTG	1 cut(s)	173
AcyI	GRCGYC	1 cut(s)	468
AdeI	CACNNNGTG	1 cut(s)	443
AfaI	GTAC	1 cut(s)	81
AgsI	TTSAA	4 cut(s)	106, 301, 364, 583
AhdI	GACNNNNNGTC	1 cut(s)	595
AjuI	GAANNNNNNNTTGG	2 cut(s)	520, 552
AluBI	AGCT	3 cut(s)	305, 416, 622
AluI	AGCT	3 cut(s)	305, 416, 622
Alw26I	GTCTC	2 cut(s)	453, 475
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	3 cut(s)	58, 273, 391
ApeKI	GCWGC	1 cut(s)	305
AspLEI	GCGC	2 cut(s)	74, 181
AspS9I	GGNCC	1 cut(s)	26
AsuC2I	CCSGG	3 cut(s)	30, 31, 277
AsuHPI	GGTGA	1 cut(s)	506
AsuII	TTCGAA	1 cut(s)	138
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	36
BalI	TGGCCA	1 cut(s)	393
BanI	GGYRCC	1 cut(s)	544
BbrPI	CACGTG	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	3 cut(s)	128, 311, 535
BciVI	GTATCC	1 cut(s)	663
BclI	TGATCA	2 cut(s)	199, 241
BcnI	CCSGG	3 cut(s)	30, 31, 277
BcoDI	GTCTC	2 cut(s)	453, 475
BfoI	RGCGCY	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	663
BisI	GCNGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	307
Bme1390I	CCNGG	3 cut(s)	30, 31, 277
Bme18I	GGWCC	1 cut(s)	26
BmeRI	GACNNNNNGTC	1 cut(s)	595
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	2 cut(s)	28, 546
BmrFI	CCNGG	3 cut(s)	30, 31, 277
BmsI	GCATC	2 cut(s)	391, 498
BpiI	GAAGAC	1 cut(s)	281
Bpu14I	TTCGAA	1 cut(s)	138
BpuMI	CCSGG	3 cut(s)	30, 31, 277
BsaAI	YACGTR	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	468
BsaJI	CCNNGG	4 cut(s)	29, 61, 276, 628
BseDI	CCNNGG	4 cut(s)	29, 61, 276, 628
BseGI	GGATG	3 cut(s)	202, 513, 546
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	292
BseYI	CCCAGC	1 cut(s)	416
Bsh1236I	CGCG	2 cut(s)	354, 441
BshFI	GGCC	3 cut(s)	60, 275, 393
BshNI	GGYRCC	1 cut(s)	544
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	2 cut(s)	30, 276
BsmAI	GTCTC	2 cut(s)	453, 475
BsmBI	CGTCTC	1 cut(s)	475
BsnI	GGCC	3 cut(s)	60, 275, 393
BsoBI	CYCGRG	1 cut(s)	29
Bsp119I	TTCGAA	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	4 cut(s)	154, 189, 199, 241
Bsp19I	CCATGG	1 cut(s)	628
BspACI	CCGC	2 cut(s)	441, 511
BspANI	GGCC	3 cut(s)	60, 275, 393
BspFNI	CGCG	2 cut(s)	354, 441
BspLI	GGNNCC	2 cut(s)	28, 546
BspT104I	TTCGAA	1 cut(s)	138
BspT107I	GGYRCC	1 cut(s)	544
BssECI	CCNNGG	4 cut(s)	29, 61, 276, 628
BssMI	GATC	4 cut(s)	154, 189, 199, 241
BssNI	GRCGYC	1 cut(s)	468
BssT1I	CCWWGG	2 cut(s)	61, 628
Bst4CI	ACNGT	2 cut(s)	86, 494
BstACI	GRCGYC	1 cut(s)	468
BstAPI	GCANNNNNTGC	1 cut(s)	508
BstBAI	YACGTR	1 cut(s)	173
BstBI	TTCGAA	1 cut(s)	138
BstC8I	GCNNGC	3 cut(s)	478, 624, 636
BstDEI	CTNAG	1 cut(s)	193
BstDSI	CCRYGG	1 cut(s)	628
BstF5I	GGATG	3 cut(s)	202, 513, 546
BstFNI	CGCG	2 cut(s)	354, 441
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	74, 181
BstKTI	GATC	4 cut(s)	157, 192, 202, 244
BstMAI	GTCTC	2 cut(s)	453, 475
BstMBI	GATC	4 cut(s)	154, 189, 199, 241
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 508
BstNSI	RCATGY	1 cut(s)	638
BstSCI	CCNGG	3 cut(s)	28, 29, 275
BstSLI	GKGCMC	1 cut(s)	36
BstUI	CGCG	2 cut(s)	354, 441
BstV1I	GCAGC	1 cut(s)	292
BstV2I	GAAGAC	1 cut(s)	281
BsuI	GTATCC	1 cut(s)	663
BsuRI	GGCC	3 cut(s)	60, 275, 393
BtgI	CCRYGG	1 cut(s)	628
BtsCI	GGATG	3 cut(s)	202, 513, 546
Cac8I	GCNNGC	3 cut(s)	478, 624, 636
CfoI	GCGC	2 cut(s)	74, 181
Cfr13I	GGNCC	1 cut(s)	26
Cfr9I	CCCGGG	1 cut(s)	29
CseI	GACGC	1 cut(s)	457
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	6 cut(s)	262, 271, 389, 569, 629, 635
CviJI	RGCY	9 cut(s)	60, 100, 275, 305, 341, 393, 416, 587, 622
CviKI_1	RGCY	9 cut(s)	60, 100, 275, 305, 341, 393, 416, 587, 622
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	1 cut(s)	193
DpnI	GATC	4 cut(s)	156, 191, 201, 243
DpnII	GATC	4 cut(s)	154, 189, 199, 241
DraIII	CACNNNGTG	1 cut(s)	443
DrdI	GACNNNNNNGTC	1 cut(s)	467
DriI	GACNNNNNGTC	1 cut(s)	595
DseDI	GACNNNNNNGTC	1 cut(s)	467
EaeI	YGGCCR	3 cut(s)	58, 273, 391
Eam1105I	GACNNNNNGTC	1 cut(s)	595
Eco130I	CCWWGG	2 cut(s)	61, 628
Eco47I	GGWCC	1 cut(s)	26
Eco72I	CACGTG	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	29
EcoO109I	RGGNCCY	1 cut(s)	26
EcoT14I	CCWWGG	2 cut(s)	61, 628
ErhI	CCWWGG	2 cut(s)	61, 628
Esp3I	CGTCTC	1 cut(s)	475
FaeI	CATG	6 cut(s)	265, 274, 392, 572, 632, 638
FatI	CATG	6 cut(s)	261, 270, 388, 568, 628, 634
FbaI	TGATCA	2 cut(s)	199, 241
Fnu4HI	GCNGC	1 cut(s)	306
FokI	GGATG	3 cut(s)	189, 520, 553
Fsp4HI	GCNGC	1 cut(s)	306
GlaI	GCGC	2 cut(s)	73, 180
GluI	GCNGC	1 cut(s)	306
GsaI	CCCAGC	1 cut(s)	420
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	60, 275, 393
HapII	CCGG	2 cut(s)	30, 276
HgaI	GACGC	1 cut(s)	457
HhaI	GCGC	2 cut(s)	74, 181
Hin1I	GRCGYC	1 cut(s)	468
Hin1II	CATG	6 cut(s)	265, 274, 392, 572, 632, 638
Hin6I	GCGC	2 cut(s)	72, 179
HinP1I	GCGC	2 cut(s)	72, 179
HinfI	GANTC	1 cut(s)	434
HpaII	CCGG	2 cut(s)	30, 276
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	21, 159
Hpy188III	TCNNGA	1 cut(s)	404
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	3 cut(s)	112, 358, 658
HpyCH4III	ACNGT	2 cut(s)	86, 494
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	4 cut(s)	308, 382, 446, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 508
HpyF3I	CTNAG	1 cut(s)	193
HpySE526I	ACGT	1 cut(s)	172
Hsp92I	GRCGYC	1 cut(s)	468
Hsp92II	CATG	6 cut(s)	265, 274, 392, 572, 632, 638
HspAI	GCGC	2 cut(s)	72, 179
Ksp22I	TGATCA	2 cut(s)	199, 241
Kzo9I	GATC	4 cut(s)	154, 189, 199, 241
LmnI	GCTCC	3 cut(s)	559, 619, 643
LpnPI	CCDG	6 cut(s)	43, 289, 327, 402, 561, 580
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	2 cut(s)	391, 498
MaeII	ACGT	1 cut(s)	172
MalI	GATC	4 cut(s)	156, 191, 201, 243
MboI	GATC	4 cut(s)	154, 189, 199, 241
MboII	GAAGA	2 cut(s)	22, 281
MfeI	CAATTG	1 cut(s)	676
MhlI	GDGCHC	1 cut(s)	36
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	3 cut(s)	148, 247, 676
MluNI	TGGCCA	1 cut(s)	393
MmeI	TCCRAC	1 cut(s)	518
MnlI	CCTC	9 cut(s)	43, 46, 85, 103, 140, 224, 319, 544, 666
Mox20I	TGGCCA	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	393
MslI	CAYNNNNRTG	5 cut(s)	207, 387, 405, 573, 633
Msp20I	TGGCCA	1 cut(s)	393
MspI	CCGG	2 cut(s)	30, 276
MspR9I	CCNGG	3 cut(s)	30, 31, 277
MunI	CAATTG	1 cut(s)	676
MvnI	CGCG	2 cut(s)	354, 441
MwoI	GCNNNNNNNGC	2 cut(s)	40, 508
NciI	CCSGG	3 cut(s)	30, 31, 277
NcoI	CCATGG	1 cut(s)	628
NdeII	GATC	4 cut(s)	154, 189, 199, 241
NlaIII	CATG	6 cut(s)	265, 274, 392, 572, 632, 638
NlaIV	GGNNCC	2 cut(s)	28, 546
NspI	RCATGY	1 cut(s)	638
NspV	TTCGAA	1 cut(s)	138
PaeI	GCATGC	1 cut(s)	638
PfeI	GAWTC	1 cut(s)	434
PkrI	GCNGC	1 cut(s)	307
PmaCI	CACGTG	1 cut(s)	173
PmlI	CACGTG	1 cut(s)	173
Ppu21I	YACGTR	1 cut(s)	173
PpuMI	RGGWCCY	1 cut(s)	26
Psp5II	RGGWCCY	1 cut(s)	26
PspCI	CACGTG	1 cut(s)	173
PspFI	CCCAGC	1 cut(s)	416
PspN4I	GGNNCC	2 cut(s)	28, 546
PspPI	GGNCC	1 cut(s)	26
PspPPI	RGGWCCY	1 cut(s)	26
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
RseI	CAYNNNNRTG	5 cut(s)	207, 387, 405, 573, 633
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	4 cut(s)	154, 189, 199, 241
Sau96I	GGNCC	1 cut(s)	26
ScrFI	CCNGG	3 cut(s)	30, 31, 277
SduI	GDGCHC	1 cut(s)	36
SfaNI	GCATC	2 cut(s)	391, 498
SfuI	TTCGAA	1 cut(s)	138
SinI	GGWCC	1 cut(s)	26
SmaI	CCCGGG	1 cut(s)	31
SmiMI	CAYNNNNRTG	5 cut(s)	207, 387, 405, 573, 633
SphI	GCATGC	1 cut(s)	638
Sse9I	AATT	3 cut(s)	148, 247, 676
SsiI	CCGC	2 cut(s)	441, 511
SspI	AATATT	1 cut(s)	424
StyD4I	CCNGG	3 cut(s)	28, 29, 275
StyI	CCWWGG	2 cut(s)	61, 628
TaaI	ACNGT	2 cut(s)	86, 494
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	3 cut(s)	132, 138, 403
TasI	AATT	3 cut(s)	148, 247, 676
TfiI	GAWTC	1 cut(s)	434
TseI	GCWGC	1 cut(s)	305
TspDTI	ATGAA	3 cut(s)	259, 389, 677
TspGWI	ACGGA	2 cut(s)	67, 520
TspMI	CCCGGG	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	26
XceI	RCATGY	1 cut(s)	638
XmaI	CCCGGG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.