Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003401

Physical Location & Seq

Genomic Coordinates Reverse (-)

33440353 .. 33447216

Gene Structure 6864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0299700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2976 bp

ATGGGACTGAGGACAGCCGCAGCAAGATTAGGGTTAGAATTAGCGAGTGCAAGGAAGGATCCGAAGCAGAAATTGATGATGATCAAGAAAATTAGCAGCAGTAGCAGCAGCAGCCTTTCGCAGTTTATGAGAAGATCCAGTAGTTTAGCAAGGGCAGCAGATACATGGGAGAAGACTGTATACTTATGTTTCTTTGAGTCGAGTCAATGCGGTGCTGTTGAATACCTGAATCAAGTTATTCGCCCCATCAAATTGAGCCAGGTTAATAGTAATGATGATGATATTGCCGTGGAGTTGCGCGAAGCAGCTTATAAGAGGTCCAAGGTTAATTTATGGTATTCCAATTGCAGTCGCTTCGGCTCCCAAATTCTTGTCGCCGGCGGCCGTAGACGGCCCCCGCCAGACGTTATGGGTCCTGCTATTGGCCGTAGAGATATTTATTGGTTTGACACGACCCAGGGGAAATTCCAGGTTTCCTCCCCAACGAAAACCAAAATCAAGAGCTTCTCAACTGGTAAACAAGCCGTGCTGTTGGGGGAGCTTAACCGCAAACTCTATTGCATCGAGAACAACCCCTTTAGCATGACTCCTCCCTCTCAGCCTTTTCAGGTATTGGACCCCGAAAACGACCTCAAGTGGCGGTCTCTGGAAGCGCCTCCCTTTATCCGCGGCCAAGAGTCGGAGGACTTCACTGCGTCTTTTTTGGAGGGGAGCAACAAAATCTTAGGTTGGGTGTGGCAGCAGCCTGGAGTGTTTTGCTTTGATGACACCAAGCCTGAAAATGGATGGATAGAGTCACCTTCTTGTCTGGGAAACAGCCTTCCCTTTCTTGACCATGGGCATTTCTTCGTCCGCCACCATCATCCCAATCTTGGTGCTTTCAACATAATGTTTCACTATCATCCTGACAATGCACCTCTCCTTGTATCCACCTTTGTCATGCCAAACAACTGTGACTCTTTCCATCCTATCAACAAACCTCTTCAGCTGCCAGAATTGTGTTATGAATTTCGAGAGGATGAGTATGATGACACCTTCTCTACCGATTTTCAATTTGTCCATCTCGGAGCTCAAAAAGTATGCCTTGTTTTGCACAAATTCTTCTTCCCATCAACAGGGAAGGTTCAATGTCGAAACATGGGGAGTCTTCTTCTCATAACATTTGAATATGACGTTATTAGTAATACTGCTGTCGACTCCAAATCCACCTTGGAGATCCAGACCCGATTGCTCGGGACCCACCGCCGTCGATACTTTACCAGGCAGCTGCGTAAACCAGATTATACATGGACCAACACATCATACCTGACTGTGGTGTTCTCATGTATATCAGTTATACGTTCAGATTCCAGATTTCTTTGCCTCAATTCTTGCTTAAATCTTGCAAGGAACAACTTCAGTGGGAATTTTCCATATTCCATTTCCACCACGGTTTCTCTCAATTATTTGAATGTTAGCCATAATTCACTATCCCAGTCAATCGGAGATATTTTTGCTACTCTTGGTAGCCTTGCAACCTTGGATCTATCTCTGAACAACTTCTCTGGTGATATCCCTGCTTCCTTCAGTTCATTGTCCAATCTTTCCACCCTAAATGTCGCCAACAACCATTTCAGCGGATGGATACCCCGGGAGCTTAGCTCGGTTCATACTTTTATATATGATGGAAAATCCTTTGACAATGGTCCTGCTCCTCTTCCGCCACCATATAATCCGCTTCCCCCAGGAAGACCCAGTCGCAATCATTCTGGACCTGGTACACGTCCACAGAGAACTGATGGAAAATCATCTGAATCGAAGAAAGGATTGACAGTTGGAACTTTGGTGGGAATCGTTGCGGGTTCTGTTTTTGTTGCTCTCATTCTCCTACTAGCTCTTTTCTTTTGCATTCGCAAAAATAAAAGGGAAGGCAGTGTTGCAAGACCTTCGAGGGGAGGTCTCTCTGTTGGCACAAATAATGTAAATACTGAGATGCAAGAGCAGAGGGTAAAAAGTGCATCTGCTGTAACTGATCTCAAGCCCCCACCGGCAGAGATATTGGTGGTTGATGGGTTACATGGAAAAAATGGATCAATAAAAAGAATAAAATCACCTATCACTGCTACTCCTTATACTGTTGCCACTCTCCAAACAGCAACAAATGGCTTTAATCAAGAATTTCTTGTTGGTGAAAGTTCCATTGATCGTGTTTACCGAGCTGAGTTCCCCAATGGAAAGATGATGGCCATTAAGAAAATCGACAATGCAGCACTATCTCTTGAAGAGGAGGATAACTTTCTTGAAGCTGTTTCAAATATGTCACGCTTGAGGCATCCAAACATCGTGACACTGGTTAGATATTGTGCAGAACATGGACAGCGTCTTCTAGTCTATGAGTATACAGGAAATGGGAGCTTGCATGACATACTTCATTTTGCTGAAGATGGCTGTAACACACTGACATGGAATGCCCGTATTAGGGTAGCACTTGGCACTGCTCGAGCTTTAGAGTACTTGCATGAGGTGTGCTTATCTTCAGTTGTACATAGAAACTTCAAGTCAGCACATATTTTACTTGATGAAGAGCTCAATGCCCATCTATCTGACTGTGGTTTAGCTGCTCTAACGCTAAACACAGAGCGACAGGTTTCAACTCAGATGGTAGGCTCATTTGGTTATAGTGCTCCTGAGTTTGCCTTGTCCGGAGTACACACTGTAAAAAGTGATGTCTACAGCTTTGGGGTGGTGATGCTAGAGCTGTTGACTGGTCGCAAGCCACTAGACAGTTCAAGGGCAAGGTCAGAACAATCACTTGTAAGATGGGCTACTCCCCAACTCCATGCTATAGATGCTCTAGCAAAAATGGTTGATCCTTCCCTAGATGGCATGTACCCGGCAAAATCTCTTTTACGCTTCGCTGACATCATTGCCCTTTGTGTTCAGCCGGAACCTGAATTTTGGCCTCCCATGTCTGAAGTCAAGCGCTGGTCCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

991

Amino Acids

110.34

Weight (kDa)

8.6

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	479 - 538	1.2e-06	Leucine rich repeat
Pkinase	PF00069	721 - 930	8.8e-35	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	723 - 986	1.7e-34	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79640 AT1G79640 AT1G79640 AT1G79640 AT1G79640 AT1G79640
fragaria_vesca	FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050
malus_domestica	MD09G1229900.v1.1 MD17G1228700.v1.1
prunus_persica	Prupe.3G106100_v2.0.a1 Prupe.3G106100_v2.0.a1
pyrus_communis	pycom09g14840 pycom17g23120
rosa_chinensis	RchiOBHm_Chr2g0131781 RchiOBHm_Chr7g0213591
rosa_laevigata	RLG00000019211
rosa_multiflora	Rmu_sc0002589.1_g000040 Rmu_sc0009880.1_g000006
rosa_roxburghii	Rroxscaffold_2G00112600
rosa_rugosa	Rorug02G0299500 Rorug02G0299600 Rorug02G0299700 Rorug02G0299800
rosa_samantha	Rh1BG109800 Rh2AG352000 Rh2BG359100 Rh2CG337600 Rh2DG376500 Rh5CG277400
rosa_wichuraiana	Rw2G028610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	312
AccI	GTMKAC	5 cut(s)	180, 388, 1194, 2378, 2709
AccII	CGCG	2 cut(s)	300, 669
AccIII	TCCGGA	1 cut(s)	2681
AclWI	GGATC	7 cut(s)	53, 66, 129, 1210, 1530, 2077, 2843
AcoI	YGGCCR	4 cut(s)	382, 424, 670, 2223
AcsI	RAATTY	7 cut(s)	366, 464, 1007, 1097, 1405, 2156, 2933
AcuI	CTGAAG	6 cut(s)	968, 1381, 1549, 2439, 2499, 2973
AfaI	GTAC	5 cut(s)	1759, 2492, 2523, 2688, 2870
AfeI	AGCGCT	1 cut(s)	2963
AfiI	CCNNNNNNNGG	9 cut(s)	422, 679, 782, 872, 1115, 1312, 1931, 2457, 2458
AflIII	ACRYGT	1 cut(s)	1760
AjiI	CACGTC	1 cut(s)	1763
AjnI	CCWGG	7 cut(s)	258, 456, 468, 745, 1259, 1723, 1753
AjuI	GAANNNNNNNTTGG	4 cut(s)	1595, 1627, 2148, 2180
Alw21I	GWGCWC	3 cut(s)	1072, 2568, 2665
Alw26I	GTCTC	2 cut(s)	648, 1943
AlwI	GGATC	7 cut(s)	53, 66, 129, 1210, 1530, 2077, 2843
Ama87I	CYCGRG	3 cut(s)	1232, 1629, 2478
Aor13HI	TCCGGA	1 cut(s)	2681
Aor51HI	AGCGCT	1 cut(s)	2963
AoxI	GGCC	6 cut(s)	382, 392, 424, 670, 2223, 2939
ApoI	RAATTY	7 cut(s)	366, 464, 1007, 1097, 1405, 2156, 2933
Asp700I	GAANNNNTTC	2 cut(s)	1394, 1538
AspLEI	GCGC	3 cut(s)	300, 655, 2964
AspS9I	GGNCC	9 cut(s)	318, 393, 413, 616, 1236, 1290, 1685, 1751, 2967
AsuC2I	CCSGG	3 cut(s)	1630, 1631, 2873
AsuHPI	GGTGA	5 cut(s)	789, 1559, 2082, 2180, 2737
AvaI	CYCGRG	3 cut(s)	1232, 1629, 2478
AvaII	GGWCC	8 cut(s)	318, 413, 616, 1236, 1290, 1685, 1751, 2967
BalI	TGGCCA	1 cut(s)	2225
BamHI	GGATCC	1 cut(s)	58
BanII	GRGCYC	2 cut(s)	1072, 2568
BarI	GAAGNNNNNNTAC	2 cut(s)	164, 196
BbsI	GAAGAC	4 cut(s)	179, 1139, 1735, 2354
Bbv12I	GWGCWC	3 cut(s)	1072, 2568, 2665
BceAI	ACGGC	6 cut(s)	272, 369, 407, 411, 509, 1230
BcgI	CGANNNNNNTGC	4 cut(s)	337, 371, 1908, 1942
BciT130I	CCWGG	7 cut(s)	260, 458, 470, 747, 1261, 1725, 1755
BciVI	GTATCC	2 cut(s)	937, 1617
BclI	TGATCA	1 cut(s)	81
BcnI	CCSGG	3 cut(s)	1630, 1631, 2873
BcoDI	GTCTC	2 cut(s)	648, 1943
BfaI	CTAG	6 cut(s)	1871, 2366, 2732, 2759, 2834, 2858
BfmI	CTRYAG	2 cut(s)	2710, 2823
BfoI	RGCGCY	2 cut(s)	656, 2965
BfuI	GTATCC	2 cut(s)	937, 1617
BlpI	GCTNAGC	1 cut(s)	1637
BmcAI	AGTACT	1 cut(s)	2492
Bme18I	GGWCC	8 cut(s)	318, 413, 616, 1236, 1290, 1685, 1751, 2967
BmeT110I	CYCGRG	3 cut(s)	1232, 1629, 2478
BmgBI	CACGTC	1 cut(s)	1763
BmgT120I	GGNCC	9 cut(s)	318, 393, 413, 616, 1236, 1290, 1685, 1751, 2967
BmiI	GGNNCC	8 cut(s)	60, 361, 395, 414, 618, 1237, 1238, 2928
BmrI	ACTGGG	2 cut(s)	1468, 1728
BmsI	GCATC	6 cut(s)	570, 1962, 2006, 2320, 2718, 2818
BmuI	ACTGGG	2 cut(s)	1468, 1728
BoxI	GACNNNNGTC	1 cut(s)	1683
BpiI	GAAGAC	4 cut(s)	179, 1139, 1735, 2354
BplI	GAGNNNNNCTC	2 cut(s)	1625, 1657
BpmI	CTGGAG	1 cut(s)	768
Bpu1102I	GCTNAGC	1 cut(s)	1637
BpuEI	CTTGAG	3 cut(s)	617, 2000, 2326
BpuMI	CCSGG	3 cut(s)	1630, 1631, 2873
BsaBI	GATNNNNATC	1 cut(s)	80
BsaI	GGTCTC	2 cut(s)	648, 1943
BsaWI	WCCGGW	1 cut(s)	2681
BsaXI	ACNNNNNCTCC	2 cut(s)	2089, 2119
Bsc4I	CCNNNNNNNGG	9 cut(s)	422, 679, 782, 872, 1115, 1312, 1931, 2457, 2458
Bse118I	RCCGGY	2 cut(s)	377, 2026
Bse1I	ACTGG	6 cut(s)	138, 517, 1474, 1734, 2334, 2749
Bse3DI	GCAATG	1 cut(s)	2904
Bse8I	GATNNNNATC	1 cut(s)	80
BseAI	TCCGGA	1 cut(s)	2681
BseBI	CCWGG	7 cut(s)	260, 458, 470, 747, 1261, 1725, 1755
BseGI	GGATG	7 cut(s)	791, 862, 901, 964, 1024, 1625, 2311
BseJI	GATNNNNATC	1 cut(s)	80
BseLI	CCNNNNNNNGG	9 cut(s)	422, 679, 782, 872, 1115, 1312, 1931, 2457, 2458
BseMI	GCAATG	1 cut(s)	2904
BseMII	CTCAG	5 cut(s)	611, 1959, 2190, 2648, 2658
BseNI	ACTGG	6 cut(s)	138, 517, 1474, 1734, 2334, 2749
BseRI	GAGGAG	3 cut(s)	579, 1683, 2279
BseX3I	CGGCCG	1 cut(s)	382
BsgI	GTGCAG	1 cut(s)	2364
Bsh1236I	CGCG	2 cut(s)	300, 669
Bsh1285I	CGRYCG	1 cut(s)	385
BshFI	GGCC	6 cut(s)	384, 394, 426, 672, 2225, 2941
BsiEI	CGRYCG	1 cut(s)	385
BsiHKAI	GWGCWC	3 cut(s)	1072, 2568, 2665
BsiHKCI	CYCGRG	3 cut(s)	1232, 1629, 2478
BsiSI	CCGG	6 cut(s)	378, 1630, 2027, 2682, 2873, 2924
BslFI	GGGAC	2 cut(s)	18, 1249
BslI	CCNNNNNNNGG	9 cut(s)	422, 679, 782, 872, 1115, 1312, 1931, 2457, 2458
BsmAI	GTCTC	2 cut(s)	648, 1943
BsmFI	GGGAC	2 cut(s)	18, 1249
BsmI	GAATGC	2 cut(s)	1887, 2452
BsnI	GGCC	6 cut(s)	384, 394, 426, 672, 2225, 2941
Bso31I	GGTCTC	2 cut(s)	648, 1943
BsoBI	CYCGRG	3 cut(s)	1232, 1629, 2478
Bsp1286I	GDGCHC	3 cut(s)	1072, 2568, 2665
Bsp13I	TCCGGA	1 cut(s)	2681
Bsp1407I	TGTACA	1 cut(s)	2521
Bsp143I	GATC	9 cut(s)	58, 81, 134, 1215, 1522, 2011, 2069, 2182, 2848
Bsp1720I	GCTNAGC	1 cut(s)	1637
Bsp19I	CCATGG	1 cut(s)	835
BspANI	GGCC	6 cut(s)	384, 394, 426, 672, 2225, 2941
BspCNI	CTCAG	5 cut(s)	610, 1960, 2191, 2647, 2659
BspEI	TCCGGA	1 cut(s)	2681
BspFNI	CGCG	2 cut(s)	300, 669
BspLI	GGNNCC	8 cut(s)	60, 361, 395, 414, 618, 1237, 1238, 2928
BspPI	GGATC	7 cut(s)	53, 66, 129, 1210, 1530, 2077, 2843
BspQI	GCTCTTC	1 cut(s)	2556
BspTNI	GGTCTC	2 cut(s)	648, 1943
BsrDI	GCAATG	1 cut(s)	2904
BsrFI	RCCGGY	2 cut(s)	377, 2026
BsrGI	TGTACA	1 cut(s)	2521
BsrI	ACTGG	6 cut(s)	138, 517, 1474, 1734, 2334, 2749
BssAI	RCCGGY	2 cut(s)	377, 2026
BssMI	GATC	9 cut(s)	58, 81, 134, 1215, 1522, 2011, 2069, 2182, 2848
BssNAI	GTATAC	2 cut(s)	181, 2379
BssT1I	CCWWGG	4 cut(s)	321, 835, 1209, 1518
Bst1107I	GTATAC	2 cut(s)	181, 2379
Bst2UI	CCWGG	7 cut(s)	260, 458, 470, 747, 1261, 1725, 1755
Bst4CI	ACNGT	9 cut(s)	178, 953, 1312, 1432, 1813, 2116, 2588, 2695, 2765
Bst6I	CTCTTC	4 cut(s)	987, 1701, 2256, 2556
BstAUI	TGTACA	1 cut(s)	2521
BstC8I	GCNNGC	3 cut(s)	379, 2396, 2753
BstDEI	CTNAG	9 cut(s)	8, 597, 724, 1637, 1968, 2199, 2634, 2667, 2973
BstDSI	CCRYGG	4 cut(s)	288, 667, 835, 1428
BstF5I	GGATG	7 cut(s)	791, 862, 901, 964, 1024, 1625, 2311
BstFNI	CGCG	2 cut(s)	300, 669
BstH2I	RGCGCY	2 cut(s)	656, 2965
BstHHI	GCGC	3 cut(s)	300, 655, 2964
BstKTI	GATC	9 cut(s)	61, 84, 137, 1218, 1525, 2014, 2072, 2185, 2851
BstMAI	GTCTC	2 cut(s)	648, 1943
BstMBI	GATC	9 cut(s)	58, 81, 134, 1215, 1522, 2011, 2069, 2182, 2848
BstMCI	CGRYCG	1 cut(s)	385
BstMWI	GCNNNNNNNGC	5 cut(s)	102, 105, 111, 155, 2828
BstNI	CCWGG	7 cut(s)	260, 458, 470, 747, 1261, 1725, 1755
BstNSI	RCATGY	1 cut(s)	2869
BstPAI	GACNNNNGTC	1 cut(s)	1683
BstSFI	CTRYAG	2 cut(s)	2710, 2823
BstUI	CGCG	2 cut(s)	300, 669
BstV2I	GAAGAC	4 cut(s)	179, 1139, 1735, 2354
BstX2I	RGATCY	4 cut(s)	58, 134, 1215, 1522
BstYI	RGATCY	4 cut(s)	58, 134, 1215, 1522
BstZ17I	GTATAC	2 cut(s)	181, 2379
BstZI	CGGCCG	1 cut(s)	382
BsuI	GTATCC	2 cut(s)	937, 1617
BsuRI	GGCC	6 cut(s)	384, 394, 426, 672, 2225, 2941
BtgI	CCRYGG	4 cut(s)	288, 667, 835, 1428
BtrI	CACGTC	1 cut(s)	1763
BtsCI	GGATG	7 cut(s)	791, 862, 901, 964, 1024, 1625, 2311
BtsI	GCAGTG	4 cut(s)	690, 1918, 2097, 2472
BtsIMutI	CAGTG	8 cut(s)	690, 1405, 1918, 2097, 2327, 2435, 2472, 2691
Cac8I	GCNNGC	3 cut(s)	379, 2396, 2753
CfoI	GCGC	3 cut(s)	300, 655, 2964
Cfr10I	RCCGGY	2 cut(s)	377, 2026
Cfr13I	GGNCC	9 cut(s)	318, 393, 413, 616, 1236, 1290, 1685, 1751, 2967
Cfr42I	CCGCGG	1 cut(s)	670
Cfr9I	CCCGGG	1 cut(s)	1629
CseI	GACGC	2 cut(s)	684, 2348
CsiI	ACCWGGT	1 cut(s)	1753
Csp6I	GTAC	5 cut(s)	1758, 2491, 2522, 2687, 2869
CspCI	CAANNNNNGTGG	2 cut(s)	1381, 1416
CviQI	GTAC	5 cut(s)	1758, 2491, 2522, 2687, 2869
DdeI	CTNAG	9 cut(s)	8, 597, 724, 1637, 1968, 2199, 2634, 2667, 2973
DpnI	GATC	9 cut(s)	60, 83, 136, 1217, 1524, 2013, 2071, 2184, 2850
DpnII	GATC	9 cut(s)	58, 81, 134, 1215, 1522, 2011, 2069, 2182, 2848
EaeI	YGGCCR	4 cut(s)	382, 424, 670, 2223
EagI	CGGCCG	1 cut(s)	382
Eam1104I	CTCTTC	4 cut(s)	987, 1701, 2256, 2556
EarI	CTCTTC	4 cut(s)	987, 1701, 2256, 2556
EciI	GGCGGA	2 cut(s)	842, 1689
Ecl136II	GAGCTC	2 cut(s)	1070, 2566
EclXI	CGGCCG	1 cut(s)	382
Eco130I	CCWWGG	4 cut(s)	321, 835, 1209, 1518
Eco24I	GRGCYC	2 cut(s)	1072, 2568
Eco31I	GGTCTC	2 cut(s)	648, 1943
Eco32I	GATATC	1 cut(s)	1552
Eco47I	GGWCC	8 cut(s)	318, 413, 616, 1236, 1290, 1685, 1751, 2967
Eco47III	AGCGCT	1 cut(s)	2963
Eco52I	CGGCCG	1 cut(s)	382
Eco53kI	GAGCTC	2 cut(s)	1070, 2566
Eco57I	CTGAAG	6 cut(s)	968, 1381, 1549, 2439, 2499, 2973
Eco88I	CYCGRG	3 cut(s)	1232, 1629, 2478
EcoICRI	GAGCTC	2 cut(s)	1070, 2566
EcoO109I	RGGNCCY	2 cut(s)	413, 1236
EcoRII	CCWGG	7 cut(s)	258, 456, 468, 745, 1259, 1723, 1753
EcoRV	GATATC	1 cut(s)	1552
EcoT14I	CCWWGG	4 cut(s)	321, 835, 1209, 1518
EcoT38I	GRGCYC	2 cut(s)	1072, 2568
ErhI	CCWWGG	4 cut(s)	321, 835, 1209, 1518
FalI	AAGNNNNNCTT	4 cut(s)	1068, 1100, 2145, 2177
FaqI	GGGAC	2 cut(s)	18, 1249
FauI	CCCGC	2 cut(s)	405, 1831
FbaI	TGATCA	1 cut(s)	81
FblI	GTMKAC	5 cut(s)	180, 388, 1194, 2378, 2709
FokI	GGATG	7 cut(s)	798, 849, 888, 951, 1031, 1632, 2298
FriOI	GRGCYC	2 cut(s)	1072, 2568
FspBI	CTAG	6 cut(s)	1871, 2366, 2732, 2759, 2834, 2858
GlaI	GCGC	3 cut(s)	299, 654, 2963
GsuI	CTGGAG	1 cut(s)	768
HaeII	RGCGCY	2 cut(s)	656, 2965
HaeIII	GGCC	6 cut(s)	384, 394, 426, 672, 2225, 2941
HapII	CCGG	6 cut(s)	378, 1630, 2027, 2682, 2873, 2924
HgaI	GACGC	2 cut(s)	684, 2348
HhaI	GCGC	3 cut(s)	300, 655, 2964
Hin6I	GCGC	3 cut(s)	298, 653, 2962
HinP1I	GCGC	3 cut(s)	298, 653, 2962
HincII	GTYRAC	2 cut(s)	1195, 2742
HindII	GTYRAC	2 cut(s)	1195, 2742
HpaII	CCGG	6 cut(s)	378, 1630, 2027, 2682, 2873, 2924
HphI	GGTGA	5 cut(s)	789, 1559, 2082, 2180, 2737
Hpy99I	CGWCG	1 cut(s)	1251
HpyAV	CCTTC	9 cut(s)	49, 810, 830, 1045, 1114, 1573, 1901, 1935, 2862
HpyCH4III	ACNGT	9 cut(s)	178, 953, 1312, 1432, 1813, 2116, 2588, 2695, 2765
HpyCH4IV	ACGT	4 cut(s)	405, 1173, 1339, 1762
HpyF10VI	GCNNNNNNNGC	5 cut(s)	102, 105, 111, 155, 2828
HpyF3I	CTNAG	9 cut(s)	8, 597, 724, 1637, 1968, 2199, 2634, 2667, 2973
HpySE526I	ACGT	4 cut(s)	405, 1173, 1339, 1762
HspAI	GCGC	3 cut(s)	298, 653, 2962
KflI	GGGWCCC	1 cut(s)	1236
Kpn2I	TCCGGA	1 cut(s)	2681
KroI	GCCGGC	1 cut(s)	377
KroNI	GCCGGC	1 cut(s)	379
Ksp22I	TGATCA	1 cut(s)	81
KspI	CCGCGG	1 cut(s)	670
Kzo9I	GATC	9 cut(s)	58, 81, 134, 1215, 1522, 2011, 2069, 2182, 2848
LguI	GCTCTTC	1 cut(s)	2556
LmnI	GCTCC	8 cut(s)	365, 538, 711, 1067, 1633, 1696, 2391, 2668
LweI	GCATC	6 cut(s)	570, 1962, 2006, 2320, 2718, 2818
MabI	ACCWGGT	1 cut(s)	1753
MaeI	CTAG	6 cut(s)	1871, 2366, 2732, 2759, 2834, 2858
MaeII	ACGT	4 cut(s)	405, 1173, 1339, 1762
MaeIII	GTNAC	7 cut(s)	795, 953, 2005, 2052, 2298, 2323, 2429
MalI	GATC	9 cut(s)	60, 83, 136, 1217, 1524, 2013, 2071, 2184, 2850
MboI	GATC	9 cut(s)	58, 81, 134, 1215, 1522, 2011, 2069, 2182, 2848
MfeI	CAATTG	1 cut(s)	343
MflI	RGATCY	4 cut(s)	58, 134, 1215, 1522
MhlI	GDGCHC	3 cut(s)	1072, 2568, 2665
MlsI	TGGCCA	1 cut(s)	2225
MluNI	TGGCCA	1 cut(s)	2225
MlyI	GAGTC	8 cut(s)	206, 211, 580, 686, 803, 950, 1153, 1190
MmeI	TCCRAC	2 cut(s)	660, 1795
Mox20I	TGGCCA	1 cut(s)	2225
MreI	CGCCGGCG	1 cut(s)	377
MroI	TCCGGA	1 cut(s)	2681
MroNI	GCCGGC	1 cut(s)	377
MroXI	GAANNNNTTC	2 cut(s)	1394, 1538
MscI	TGGCCA	1 cut(s)	2225
MseI	TTAA	6 cut(s)	264, 327, 543, 1376, 2148, 2229
MslI	CAYNNNNRTG	1 cut(s)	2440
Msp20I	TGGCCA	1 cut(s)	2225
MspA1I	CMGCKG	4 cut(s)	669, 988, 1267, 1617
MspI	CCGG	6 cut(s)	378, 1630, 2027, 2682, 2873, 2924
MunI	CAATTG	1 cut(s)	343
Mva1269I	GAATGC	2 cut(s)	1887, 2452
MvaI	CCWGG	7 cut(s)	260, 458, 470, 747, 1261, 1725, 1755
MvnI	CGCG	2 cut(s)	300, 669
MwoI	GCNNNNNNNGC	5 cut(s)	102, 105, 111, 155, 2828
NaeI	GCCGGC	1 cut(s)	379
NciI	CCSGG	3 cut(s)	1630, 1631, 2873
NcoI	CCATGG	1 cut(s)	835
NdeII	GATC	9 cut(s)	58, 81, 134, 1215, 1522, 2011, 2069, 2182, 2848
NgoMIV	GCCGGC	1 cut(s)	377
NlaIV	GGNNCC	8 cut(s)	60, 361, 395, 414, 618, 1237, 1238, 2928
NmuCI	GTSAC	4 cut(s)	795, 953, 2298, 2323
NspI	RCATGY	1 cut(s)	2869
PaeR7I	CTCGAG	1 cut(s)	2478
PasI	CCCWGGG	1 cut(s)	457
PciSI	GCTCTTC	1 cut(s)	2556
PcsI	WCGNNNNNNNCGW	1 cut(s)	2191
PctI	GAATGC	2 cut(s)	1887, 2452
PdiI	GCCGGC	1 cut(s)	379
PdmI	GAANNNNTTC	2 cut(s)	1394, 1538
PfeI	GAWTC	4 cut(s)	229, 1346, 1793, 1830
PflFI	GACNNNGTC	2 cut(s)	1734, 2358
PleI	GAGTC	8 cut(s)	205, 210, 580, 685, 802, 950, 1152, 1190
PpsI	GAGTC	8 cut(s)	205, 210, 580, 685, 802, 950, 1152, 1190
PpuMI	RGGWCCY	2 cut(s)	413, 1236
PshAI	GACNNNNGTC	1 cut(s)	1683
PsiI	TTATAA	1 cut(s)	312
Psp124BI	GAGCTC	2 cut(s)	1072, 2568
Psp5II	RGGWCCY	2 cut(s)	413, 1236
Psp6I	CCWGG	7 cut(s)	258, 456, 468, 745, 1259, 1723, 1753
PspGI	CCWGG	7 cut(s)	258, 456, 468, 745, 1259, 1723, 1753
PspN4I	GGNNCC	8 cut(s)	60, 361, 395, 414, 618, 1237, 1238, 2928
PspPI	GGNCC	9 cut(s)	318, 393, 413, 616, 1236, 1290, 1685, 1751, 2967
PspPPI	RGGWCCY	2 cut(s)	413, 1236
PspXI	VCTCGAGB	1 cut(s)	2478
PsuI	RGATCY	4 cut(s)	58, 134, 1215, 1522
PsyI	GACNNNGTC	2 cut(s)	1734, 2358
PvuII	CAGCTG	2 cut(s)	988, 1267
RsaI	GTAC	5 cut(s)	1759, 2492, 2523, 2688, 2870
RsaNI	GTAC	5 cut(s)	1758, 2491, 2522, 2687, 2869
RseI	CAYNNNNRTG	1 cut(s)	2440
SacI	GAGCTC	2 cut(s)	1072, 2568
SacII	CCGCGG	1 cut(s)	670
SalI	GTCGAC	1 cut(s)	1193
SapI	GCTCTTC	1 cut(s)	2556
SaqAI	TTAA	6 cut(s)	264, 327, 543, 1376, 2148, 2229
Sau3AI	GATC	9 cut(s)	58, 81, 134, 1215, 1522, 2011, 2069, 2182, 2848
Sau96I	GGNCC	9 cut(s)	318, 393, 413, 616, 1236, 1290, 1685, 1751, 2967
ScaI	AGTACT	1 cut(s)	2492
SchI	GAGTC	8 cut(s)	206, 211, 580, 686, 803, 950, 1153, 1190
SduI	GDGCHC	3 cut(s)	1072, 2568, 2665
SexAI	ACCWGGT	1 cut(s)	1753
SfaNI	GCATC	6 cut(s)	570, 1962, 2006, 2320, 2718, 2818
SfcI	CTRYAG	2 cut(s)	2710, 2823
Sfr274I	CTCGAG	1 cut(s)	2478
Sfr303I	CCGCGG	1 cut(s)	670
SgrAI	CRCCGGYG	1 cut(s)	377
SgrBI	CCGCGG	1 cut(s)	670
SinI	GGWCC	8 cut(s)	318, 413, 616, 1236, 1290, 1685, 1751, 2967
SlaI	CTCGAG	1 cut(s)	2478
SmaI	CCCGGG	1 cut(s)	1631
SmiMI	CAYNNNNRTG	1 cut(s)	2440
SmlI	CTYRAG	4 cut(s)	632, 2015, 2305, 2478
SmoI	CTYRAG	4 cut(s)	632, 2015, 2305, 2478
SspMI	CTAG	6 cut(s)	1871, 2366, 2732, 2759, 2834, 2858
SstI	GAGCTC	2 cut(s)	1072, 2568
StyI	CCWWGG	4 cut(s)	321, 835, 1209, 1518
TaaI	ACNGT	9 cut(s)	178, 953, 1312, 1432, 1813, 2116, 2588, 2695, 2765
TaiI	ACGT	4 cut(s)	408, 1176, 1342, 1765
TatI	WGTACW	3 cut(s)	2490, 2521, 2686
TauI	GCSGC	3 cut(s)	20, 384, 672
TfiI	GAWTC	4 cut(s)	229, 1346, 1793, 1830
Tru1I	TTAA	6 cut(s)	264, 327, 543, 1376, 2148, 2229
Tru9I	TTAA	6 cut(s)	264, 327, 543, 1376, 2148, 2229
TscAI	CASTG	8 cut(s)	697, 1405, 1918, 2104, 2334, 2442, 2479, 2698
TseFI	GTSAC	4 cut(s)	795, 953, 2298, 2323
Tsp45I	GTSAC	4 cut(s)	795, 953, 2298, 2323
TspDTI	ATGAA	5 cut(s)	1020, 1560, 1637, 2399, 2574
TspMI	CCCGGG	1 cut(s)	1629
TspRI	CASTG	8 cut(s)	697, 1405, 1918, 2104, 2334, 2442, 2479, 2698
Tth111I	GACNNNGTC	2 cut(s)	1734, 2358
VpaK11BI	GGWCC	8 cut(s)	318, 413, 616, 1236, 1290, 1685, 1751, 2967
XapI	RAATTY	7 cut(s)	366, 464, 1007, 1097, 1405, 2156, 2933
XceI	RCATGY	1 cut(s)	2869
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1207, 1284
XhoI	CTCGAG	1 cut(s)	2478
XmaI	CCCGGG	1 cut(s)	1629
XmiI	GTMKAC	5 cut(s)	180, 388, 1194, 2378, 2709
XmnI	GAANNNNTTC	2 cut(s)	1394, 1538
XspI	CTAG	6 cut(s)	1871, 2366, 2732, 2759, 2834, 2858
ZrmI	AGTACT	1 cut(s)	2492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.