Autophagy-related protein C terminal domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G19190 AT3G19190 AT3G19190 |
| fragaria_vesca | FvH4_2g06220 |
| malus_domestica | MD05G1079500.v1.1 MD10G1093800.v1.1 |
| prunus_persica | Prupe.8G123400_v2.0.a1 Prupe.8G123400_v2.0.a1 |
| pyrus_communis | pycom05g07260 pycom10g07720 |
| rosa_chinensis | RchiOBHm_Chr6g0256971 |
| rosa_laevigata | RLG00000014666 |
| rosa_multiflora | Rmu_co8396705.1_g000001 Rmu_sc0000659.1_g000038 |
| rosa_roxburghii | Rroxscaffold_7G00208380 |
| rosa_rugosa | Rorug05G0576000 Rorug05G0576100 |
| rosa_samantha | Rh6AG094700 Rh6BG085900 Rh6CG082000 Rh6DG077700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 5403 |
| Acc36I | ACCTGC | 2 cut(s) | 1579, 4070 |
| Acc65I | GGTACC | 1 cut(s) | 1216 |
| AccB1I | GGYRCC | 4 cut(s) | 152, 804, 1216, 3011 |
| AccI | GTMKAC | 2 cut(s) | 918, 2710 |
| AccII | CGCG | 6 cut(s) | 20, 46, 176, 2834, 3123, 3357 |
| AccIII | TCCGGA | 1 cut(s) | 4646 |
| AciI | CCGC | 8 cut(s) | 29, 46, 2832, 3123, 3357, 4952, 5160, 5502 |
| AcoI | YGGCCR | 2 cut(s) | 4953, 5499 |
| AcuI | CTGAAG | 6 cut(s) | 648, 1197, 1803, 1836, 2604, 3426 |
| AcyI | GRCGYC | 1 cut(s) | 120 |
| AdeI | CACNNNGTG | 1 cut(s) | 818 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 516, 814, 2997, 3733, 3841, 4111, 4682, 5197, 5198 |
| AflII | CTTAAG | 3 cut(s) | 4520, 5216, 5423 |
| AflIII | ACRYGT | 4 cut(s) | 617, 1358, 3487, 4882 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3787 |
| AjiI | CACGTC | 1 cut(s) | 1359 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 228, 260, 4917, 4949 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 23, 55 |
| Alw21I | GWGCWC | 6 cut(s) | 591, 2687, 3861, 4162, 4964, 5818 |
| Alw26I | GTCTC | 6 cut(s) | 1499, 1563, 2841, 2992, 5258, 5410 |
| Alw44I | GTGCAC | 2 cut(s) | 3857, 4158 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 1046, 1175, 4181, 5765 |
| Aor13HI | TCCGGA | 1 cut(s) | 4646 |
| ApaLI | GTGCAC | 2 cut(s) | 3857, 4158 |
| AseI | ATTAAT | 1 cut(s) | 1707 |
| Asp700I | GAANNNNTTC | 7 cut(s) | 726, 795, 1800, 2098, 4549, 5464, 5631 |
| Asp718I | GGTACC | 1 cut(s) | 1216 |
| AspA2I | CCTAGG | 2 cut(s) | 1190, 1552 |
| AspLEI | GCGC | 1 cut(s) | 178 |
| AspS9I | GGNCC | 8 cut(s) | 51, 2224, 2288, 2528, 3031, 4789, 5689, 5882 |
| AsuC2I | CCSGG | 1 cut(s) | 816 |
| AsuNHI | GCTAGC | 1 cut(s) | 3160 |
| AvaII | GGWCC | 5 cut(s) | 2224, 2528, 4789, 5689, 5882 |
| AvrII | CCTAGG | 2 cut(s) | 1190, 1552 |
| AxyI | CCTNAGG | 1 cut(s) | 3615 |
| BaeGI | GKGCMC | 3 cut(s) | 155, 3861, 4162 |
| BamHI | GGATCC | 1 cut(s) | 3190 |
| BanI | GGYRCC | 4 cut(s) | 152, 804, 1216, 3011 |
| BanII | GRGCYC | 5 cut(s) | 2687, 3140, 3408, 3450, 4964 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1170, 1202, 4603, 4635 |
| BauI | CACGAG | 2 cut(s) | 493, 2079 |
| BbsI | GAAGAC | 6 cut(s) | 2115, 2120, 4410, 4458, 4971, 5321 |
| Bbv12I | GWGCWC | 6 cut(s) | 591, 2687, 3861, 4162, 4964, 5818 |
| BceAI | ACGGC | 3 cut(s) | 38, 792, 4286 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4026, 4060 |
| BciVI | GTATCC | 1 cut(s) | 4654 |
| BclI | TGATCA | 3 cut(s) | 3076, 4096, 4972 |
| BcnI | CCSGG | 1 cut(s) | 816 |
| BcoDI | GTCTC | 6 cut(s) | 1499, 1563, 2841, 2992, 5258, 5410 |
| BfmI | CTRYAG | 8 cut(s) | 942, 1098, 4446, 5122, 5210, 5571, 5766, 5775 |
| BfrI | CTTAAG | 3 cut(s) | 4520, 5216, 5423 |
| BfuAI | ACCTGC | 2 cut(s) | 1579, 4070 |
| BfuI | GTATCC | 1 cut(s) | 4654 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3683 |
| BglII | AGATCT | 3 cut(s) | 2052, 2096, 3580 |
| BlnI | CCTAGG | 2 cut(s) | 1190, 1552 |
| BlpI | GCTNAGC | 1 cut(s) | 2557 |
| Bme18I | GGWCC | 5 cut(s) | 2224, 2528, 4789, 5689, 5882 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3787 |
| BmgBI | CACGTC | 1 cut(s) | 1359 |
| BmgT120I | GGNCC | 8 cut(s) | 51, 2224, 2288, 2528, 3031, 4789, 5689, 5882 |
| BmtI | GCTAGC | 1 cut(s) | 3164 |
| BoxI | GACNNNNGTC | 1 cut(s) | 5124 |
| BpiI | GAAGAC | 6 cut(s) | 2115, 2120, 4410, 4458, 4971, 5321 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 326, 358, 3982, 4014 |
| BpmI | CTGGAG | 2 cut(s) | 3139, 4256 |
| Bpu10I | CCTNAGC | 1 cut(s) | 5847 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2557 |
| BpuEI | CTTGAG | 7 cut(s) | 329, 1584, 1636, 2261, 2701, 3398, 5607 |
| BpuMI | CCSGG | 1 cut(s) | 816 |
| BsaAI | YACGTR | 2 cut(s) | 505, 4883 |
| BsaBI | GATNNNNATC | 1 cut(s) | 4053 |
| BsaHI | GRCGYC | 1 cut(s) | 120 |
| BsaWI | WCCGGW | 1 cut(s) | 4646 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 23, 53, 3919, 3949, 4646, 4676 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 516, 814, 2997, 3733, 3841, 4111, 4682, 5197, 5198 |
| Bse21I | CCTNAGG | 1 cut(s) | 3615 |
| Bse3DI | GCAATG | 3 cut(s) | 1838, 4128, 4492 |
| Bse8I | GATNNNNATC | 1 cut(s) | 4053 |
| BseAI | TCCGGA | 1 cut(s) | 4646 |
| BseJI | GATNNNNATC | 1 cut(s) | 4053 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 516, 814, 2997, 3733, 3841, 4111, 4682, 5197, 5198 |
| BseMI | GCAATG | 3 cut(s) | 1838, 4128, 4492 |
| BseMII | CTCAG | 8 cut(s) | 2028, 2040, 2852, 3561, 3606, 4013, 4062, 5838 |
| BseRI | GAGGAG | 3 cut(s) | 4374, 4851, 5075 |
| BseSI | GKGCMC | 3 cut(s) | 155, 3861, 4162 |
| BseYI | CCCAGC | 5 cut(s) | 962, 1466, 5129, 5247, 5504 |
| BsgI | GTGCAG | 6 cut(s) | 231, 351, 1578, 3121, 3905, 3999 |
| Bsh1236I | CGCG | 6 cut(s) | 20, 46, 176, 2834, 3123, 3357 |
| BshNI | GGYRCC | 4 cut(s) | 152, 804, 1216, 3011 |
| BsiHKAI | GWGCWC | 6 cut(s) | 591, 2687, 3861, 4162, 4964, 5818 |
| BsiSI | CCGG | 3 cut(s) | 815, 4647, 5783 |
| BslFI | GGGAC | 7 cut(s) | 1927, 2237, 4906, 5112, 5174, 5521, 5868 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 516, 814, 2997, 3733, 3841, 4111, 4682, 5197, 5198 |
| BsmAI | GTCTC | 6 cut(s) | 1499, 1563, 2841, 2992, 5258, 5410 |
| BsmBI | CGTCTC | 2 cut(s) | 1499, 2841 |
| BsmFI | GGGAC | 7 cut(s) | 1927, 2237, 4906, 5112, 5174, 5521, 5868 |
| BsmI | GAATGC | 6 cut(s) | 759, 1768, 4551, 4817, 5436, 5550 |
| Bsp13I | TCCGGA | 1 cut(s) | 4646 |
| Bsp1407I | TGTACA | 1 cut(s) | 3178 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2557 |
| Bsp19I | CCATGG | 2 cut(s) | 3034, 5192 |
| Bsp68I | TCGCGA | 1 cut(s) | 20 |
| BspACI | CCGC | 8 cut(s) | 29, 46, 2832, 3123, 3357, 4952, 5160, 5502 |
| BspCNI | CTCAG | 8 cut(s) | 2029, 2041, 2851, 3560, 3607, 4012, 4063, 5839 |
| BspEI | TCCGGA | 1 cut(s) | 4646 |
| BspFNI | CGCG | 6 cut(s) | 20, 46, 176, 2834, 3123, 3357 |
| BspHI | TCATGA | 3 cut(s) | 2608, 3913, 5512 |
| BspMAI | CTGCAG | 2 cut(s) | 5575, 5770 |
| BspMI | ACCTGC | 2 cut(s) | 1579, 4070 |
| BspOI | GCTAGC | 1 cut(s) | 3164 |
| BspQI | GCTCTTC | 2 cut(s) | 4969, 5823 |
| BspT107I | GGYRCC | 4 cut(s) | 152, 804, 1216, 3011 |
| BspTI | CTTAAG | 3 cut(s) | 4520, 5216, 5423 |
| BsrDI | GCAATG | 3 cut(s) | 1838, 4128, 4492 |
| BsrGI | TGTACA | 1 cut(s) | 3178 |
| BssNI | GRCGYC | 1 cut(s) | 120 |
| BssSI | CACGAG | 2 cut(s) | 493, 2079 |
| Bst2BI | CACGAG | 2 cut(s) | 493, 2079 |
| Bst6I | CTCTTC | 7 cut(s) | 53, 1153, 1791, 3465, 4863, 4969, 5823 |
| BstACI | GRCGYC | 1 cut(s) | 120 |
| BstAFI | CTTAAG | 3 cut(s) | 4520, 5216, 5423 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 285, 431, 765, 5765 |
| BstAUI | TGTACA | 1 cut(s) | 3178 |
| BstBAI | YACGTR | 2 cut(s) | 505, 4883 |
| BstC8I | GCNNGC | 6 cut(s) | 2392, 3030, 3100, 3162, 3544, 4638 |
| BstDSI | CCRYGG | 4 cut(s) | 8, 2284, 3034, 5192 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 4109 |
| BstFNI | CGCG | 6 cut(s) | 20, 46, 176, 2834, 3123, 3357 |
| BstHHI | GCGC | 1 cut(s) | 178 |
| BstMAI | GTCTC | 6 cut(s) | 1499, 1563, 2841, 2992, 5258, 5410 |
| BstNSI | RCATGY | 6 cut(s) | 621, 1418, 1439, 2428, 3491, 5225 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 5124 |
| BstSFI | CTRYAG | 8 cut(s) | 942, 1098, 4446, 5122, 5210, 5571, 5766, 5775 |
| BstSLI | GKGCMC | 3 cut(s) | 155, 3861, 4162 |
| BstUI | CGCG | 6 cut(s) | 20, 46, 176, 2834, 3123, 3357 |
| BstV2I | GAAGAC | 6 cut(s) | 2115, 2120, 4410, 4458, 4971, 5321 |
| BstX2I | RGATCY | 9 cut(s) | 239, 1406, 2052, 2086, 2096, 3190, 3359, 3580, 4849 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 380, 1124 |
| BstYI | RGATCY | 9 cut(s) | 239, 1406, 2052, 2086, 2096, 3190, 3359, 3580, 4849 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3615 |
| BsuI | GTATCC | 1 cut(s) | 4654 |
| BtgI | CCRYGG | 4 cut(s) | 8, 2284, 3034, 5192 |
| BtgZI | GCGATG | 1 cut(s) | 50 |
| BtrI | CACGTC | 1 cut(s) | 1359 |
| BtsI | GCAGTG | 1 cut(s) | 1371 |
| BtuMI | TCGCGA | 1 cut(s) | 20 |
| BveI | ACCTGC | 2 cut(s) | 1579, 4070 |
| Cac8I | GCNNGC | 6 cut(s) | 2392, 3030, 3100, 3162, 3544, 4638 |
| CaiI | CAGNNNCTG | 4 cut(s) | 1046, 1175, 4181, 5765 |
| CciI | TCATGA | 3 cut(s) | 2608, 3913, 5512 |
| CfoI | GCGC | 1 cut(s) | 178 |
| Cfr13I | GGNCC | 8 cut(s) | 51, 2224, 2288, 2528, 3031, 4789, 5689, 5882 |
| CseI | GACGC | 6 cut(s) | 128, 929, 1516, 2823, 4161, 5550 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3226, 3261 |
| DraIII | CACNNNGTG | 1 cut(s) | 818 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3787 |
| EaeI | YGGCCR | 2 cut(s) | 4953, 5499 |
| Eam1104I | CTCTTC | 7 cut(s) | 53, 1153, 1791, 3465, 4863, 4969, 5823 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3787 |
| EarI | CTCTTC | 7 cut(s) | 53, 1153, 1791, 3465, 4863, 4969, 5823 |
| Ecl136II | GAGCTC | 2 cut(s) | 2685, 4962 |
| Eco147I | AGGCCT | 1 cut(s) | 2481 |
| Eco24I | GRGCYC | 5 cut(s) | 2687, 3140, 3408, 3450, 4964 |
| Eco47I | GGWCC | 5 cut(s) | 2224, 2528, 4789, 5689, 5882 |
| Eco53kI | GAGCTC | 2 cut(s) | 2685, 4962 |
| Eco57I | CTGAAG | 6 cut(s) | 648, 1197, 1803, 1836, 2604, 3426 |
| Eco81I | CCTNAGG | 1 cut(s) | 3615 |
| EcoICRI | GAGCTC | 2 cut(s) | 2685, 4962 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 4109 |
| EcoO109I | RGGNCCY | 1 cut(s) | 5882 |
| EcoRI | GAATTC | 3 cut(s) | 791, 2653, 5631 |
| EcoT22I | ATGCAT | 2 cut(s) | 3148, 4039 |
| EcoT38I | GRGCYC | 5 cut(s) | 2687, 3140, 3408, 3450, 4964 |
| Esp3I | CGTCTC | 2 cut(s) | 1499, 2841 |
| FaqI | GGGAC | 7 cut(s) | 1927, 2237, 4906, 5112, 5174, 5521, 5868 |
| FauI | CCCGC | 1 cut(s) | 5153 |
| FauNDI | CATATG | 1 cut(s) | 3460 |
| FbaI | TGATCA | 3 cut(s) | 3076, 4096, 4972 |
| FblI | GTMKAC | 2 cut(s) | 918, 2710 |
| FriOI | GRGCYC | 5 cut(s) | 2687, 3140, 3408, 3450, 4964 |
| GlaI | GCGC | 1 cut(s) | 177 |
| GsaI | CCCAGC | 5 cut(s) | 966, 1470, 5133, 5251, 5508 |
| GsuI | CTGGAG | 2 cut(s) | 3139, 4256 |
| HapII | CCGG | 3 cut(s) | 815, 4647, 5783 |
| HgaI | GACGC | 6 cut(s) | 128, 929, 1516, 2823, 4161, 5550 |
| HhaI | GCGC | 1 cut(s) | 178 |
| Hin1I | GRCGYC | 1 cut(s) | 120 |
| Hin6I | GCGC | 1 cut(s) | 176 |
| HinP1I | GCGC | 1 cut(s) | 176 |
| HincII | GTYRAC | 2 cut(s) | 1113, 5119 |
| HindII | GTYRAC | 2 cut(s) | 1113, 5119 |
| HindIII | AAGCTT | 2 cut(s) | 3438, 4700 |
| HpaII | CCGG | 3 cut(s) | 815, 4647, 5783 |
| Hpy99I | CGWCG | 2 cut(s) | 122, 188 |
| HpyCH4IV | ACGT | 5 cut(s) | 183, 504, 755, 1358, 4882 |
| HpySE526I | ACGT | 5 cut(s) | 183, 504, 755, 1358, 4882 |
| Hsp92I | GRCGYC | 1 cut(s) | 120 |
| HspAI | GCGC | 1 cut(s) | 176 |
| KflI | GGGWCCC | 1 cut(s) | 5882 |
| Kpn2I | TCCGGA | 1 cut(s) | 4646 |
| KpnI | GGTACC | 1 cut(s) | 1220 |
| Ksp22I | TGATCA | 3 cut(s) | 3076, 4096, 4972 |
| LguI | GCTCTTC | 2 cut(s) | 4969, 5823 |
| MaeII | ACGT | 5 cut(s) | 183, 504, 755, 1358, 4882 |
| MfeI | CAATTG | 6 cut(s) | 465, 683, 3240, 3962, 5268, 5391 |
| MflI | RGATCY | 9 cut(s) | 239, 1406, 2052, 2086, 2096, 3190, 3359, 3580, 4849 |
| MlyI | GAGTC | 4 cut(s) | 4082, 5503, 5689, 5870 |
| MmeI | TCCRAC | 6 cut(s) | 1984, 2578, 4173, 4336, 5357, 5461 |
| Mph1103I | ATGCAT | 2 cut(s) | 3148, 4039 |
| MroI | TCCGGA | 1 cut(s) | 4646 |
| MroXI | GAANNNNTTC | 7 cut(s) | 726, 795, 1800, 2098, 4549, 5464, 5631 |
| MslI | CAYNNNNRTG | 9 cut(s) | 378, 453, 568, 1515, 2190, 2352, 2613, 3762, 5226 |
| MspA1I | CMGCKG | 5 cut(s) | 29, 1385, 5133, 5504, 5771 |
| MspCI | CTTAAG | 3 cut(s) | 4520, 5216, 5423 |
| MspI | CCGG | 3 cut(s) | 815, 4647, 5783 |
| MunI | CAATTG | 6 cut(s) | 465, 683, 3240, 3962, 5268, 5391 |
| Mva1269I | GAATGC | 6 cut(s) | 759, 1768, 4551, 4817, 5436, 5550 |
| MvnI | CGCG | 6 cut(s) | 20, 46, 176, 2834, 3123, 3357 |
| NciI | CCSGG | 1 cut(s) | 816 |
| NcoI | CCATGG | 2 cut(s) | 3034, 5192 |
| NdeI | CATATG | 1 cut(s) | 3460 |
| NheI | GCTAGC | 1 cut(s) | 3160 |
| NmeAIII | GCCGAG | 1 cut(s) | 1592 |
| NmuCI | GTSAC | 4 cut(s) | 404, 1194, 2521, 4074 |
| NruI | TCGCGA | 1 cut(s) | 20 |
| NsiI | ATGCAT | 2 cut(s) | 3148, 4039 |
| NspI | RCATGY | 6 cut(s) | 621, 1418, 1439, 2428, 3491, 5225 |
| PagI | TCATGA | 3 cut(s) | 2608, 3913, 5512 |
| PasI | CCCWGGG | 1 cut(s) | 389 |
| PceI | AGGCCT | 1 cut(s) | 2481 |
| PciI | ACATGT | 2 cut(s) | 617, 3487 |
| PciSI | GCTCTTC | 2 cut(s) | 4969, 5823 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 180, 761 |
| PctI | GAATGC | 6 cut(s) | 759, 1768, 4551, 4817, 5436, 5550 |
| PdmI | GAANNNNTTC | 7 cut(s) | 726, 795, 1800, 2098, 4549, 5464, 5631 |
| PflFI | GACNNNGTC | 1 cut(s) | 2119 |
| PleI | GAGTC | 4 cut(s) | 4081, 5503, 5689, 5869 |
| PpsI | GAGTC | 4 cut(s) | 4081, 5503, 5689, 5869 |
| Ppu21I | YACGTR | 2 cut(s) | 505, 4883 |
| PpuMI | RGGWCCY | 1 cut(s) | 5882 |
| PscI | ACATGT | 2 cut(s) | 617, 3487 |
| PshAI | GACNNNNGTC | 1 cut(s) | 5124 |
| PshBI | ATTAAT | 1 cut(s) | 1707 |
| PsiI | TTATAA | 1 cut(s) | 5403 |
| Psp124BI | GAGCTC | 2 cut(s) | 2687, 4964 |
| Psp5II | RGGWCCY | 1 cut(s) | 5882 |
| PspFI | CCCAGC | 5 cut(s) | 962, 1466, 5129, 5247, 5504 |
| PspPI | GGNCC | 8 cut(s) | 51, 2224, 2288, 2528, 3031, 4789, 5689, 5882 |
| PspPPI | RGGWCCY | 1 cut(s) | 5882 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3054, 3086 |
| PstI | CTGCAG | 2 cut(s) | 5575, 5770 |
| PstNI | CAGNNNCTG | 4 cut(s) | 1046, 1175, 4181, 5765 |
| PsuI | RGATCY | 9 cut(s) | 239, 1406, 2052, 2086, 2096, 3190, 3359, 3580, 4849 |
| PsyI | GACNNNGTC | 1 cut(s) | 2119 |
| PvuII | CAGCTG | 3 cut(s) | 1385, 5133, 5771 |
| RruI | TCGCGA | 1 cut(s) | 20 |
| RseI | CAYNNNNRTG | 9 cut(s) | 378, 453, 568, 1515, 2190, 2352, 2613, 3762, 5226 |
| SacI | GAGCTC | 2 cut(s) | 2687, 4964 |
| SapI | GCTCTTC | 2 cut(s) | 4969, 5823 |
| Sau96I | GGNCC | 8 cut(s) | 51, 2224, 2288, 2528, 3031, 4789, 5689, 5882 |
| SchI | GAGTC | 4 cut(s) | 4082, 5503, 5689, 5870 |
| SfcI | CTRYAG | 8 cut(s) | 942, 1098, 4446, 5122, 5210, 5571, 5766, 5775 |
| SinI | GGWCC | 5 cut(s) | 2224, 2528, 4789, 5689, 5882 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 378, 453, 568, 1515, 2190, 2352, 2613, 3762, 5226 |
| SseBI | AGGCCT | 1 cut(s) | 2481 |
| SsiI | CCGC | 8 cut(s) | 29, 46, 2832, 3123, 3357, 4952, 5160, 5502 |
| SspI | AATATT | 5 cut(s) | 834, 1705, 2401, 2995, 5537 |
| SstI | GAGCTC | 2 cut(s) | 2687, 4964 |
| StuI | AGGCCT | 1 cut(s) | 2481 |
| TaiI | ACGT | 5 cut(s) | 186, 507, 758, 1361, 4885 |
| TaqII | GACCGA | 2 cut(s) | 4806, 5331 |
| TatI | WGTACW | 5 cut(s) | 1889, 2474, 3178, 4513, 5491 |
| TauI | GCSGC | 2 cut(s) | 4955, 5504 |
| TseFI | GTSAC | 4 cut(s) | 404, 1194, 2521, 4074 |
| Tsp45I | GTSAC | 4 cut(s) | 404, 1194, 2521, 4074 |
| TspGWI | ACGGA | 5 cut(s) | 753, 899, 1632, 2810, 3587 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2119 |
| Vha464I | CTTAAG | 3 cut(s) | 4520, 5216, 5423 |
| VneI | GTGCAC | 2 cut(s) | 3857, 4158 |
| VpaK11BI | GGWCC | 5 cut(s) | 2224, 2528, 4789, 5689, 5882 |
| VspI | ATTAAT | 1 cut(s) | 1707 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 4109 |
| XbaI | TCTAGA | 1 cut(s) | 4574 |
| XceI | RCATGY | 6 cut(s) | 621, 1418, 1439, 2428, 3491, 5225 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 832, 3685, 5344, 5720 |
| XmaJI | CCTAGG | 2 cut(s) | 1190, 1552 |
| XmiI | GTMKAC | 2 cut(s) | 918, 2710 |
| XmnI | GAANNNNTTC | 7 cut(s) | 726, 795, 1800, 2098, 4549, 5464, 5631 |
| Zsp2I | ATGCAT | 2 cut(s) | 3148, 4039 |