Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010386

Physical Location & Seq

Genomic Coordinates Forward (+)

77249511 .. 77257964

Gene Structure 8454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0576100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGCTTTCTTTTCTTCTCTTGCCAATCTGTGGTGCTTAACCAAGCAATATATTGCTATTTCAAGGGTTGTACTATACGCGAATGGCTTCGATTTCATAGGAGCCTTTTCCTTCCCTTTCCTCACCTTCACCCTCTTCTCCCTCGCTGTCACCGTCCTCAACAGCCTAAGCCTCCTCCTGGTTTTGGTTTTTCTCCGCCTCCCGCTTCATCTCTCTCTCCCGCGGCTCGCATTCCGCCGTCAAAGCTTCCGTCAGTCCTCTTCATCTTCGTCATCGGCAACCTCAAGCTCGTCGGTTATCGGTGCCGAACAACCTGTAAGCAACTTCTCTTCGCTTTCTCAGATTTCCTTTTCGTTGCTCCGGTTGTTGCTTCAACCAGATTCGGAGCCTAAAGCCGAGTTACTAATTTATGATGGAACATTAACAGAGTATCTAGTTAACGGTGATAATCTTGGTAGTGGTATGAAATGTGTAAAAAATGATGTAGAATTTGGTGATGTTGATGGTAATCATCATAAGGGTACTGATATTGATACTGTAAAAGATAGTGTACAATGTATTGATGATAACAATGATGATTTTTTTAGTAATAGGCAACATGTGGATTTGTTCAGATTTTTCTCTGTTGTGAGACATAAAGATCGGTATGATTTAGTTTCAAAGAAGAGGCTATGGTGTTTTGTGTCCAAAGAATTGGACTTGAATGGTGGAGCAACATGTTGTGCATTTGCCTGGATTTTGAACAAGCGAAAGCATCAGCTAAGAGTACTGGTCCAACTTCTAAGATTTTATCTGTCAACAAGGACATCTGACGGACTTTCAGTATCAACACTGACCCTTTCCAAGGGTTTACAAAACCGAGAGGGAGAAGATATGGTTGCAAGTGATCTTGTACTCAAGGCAATGCAATCTGGTGTTGCTTATTATGTGATGGGAATGGTAGTGAAGGAAAAGGGACCGGTTTTTCACTTGGCTTTTCATCCCTTGGCCACAGTAGGTAGCATTAATCCTGGGTTCCTTTGTTTTAGCAGAACAATTGTACATTGCGAGTGTTATTGGAGCAGCTTTAATCATCATTGGTCTGTATCTCGTGATCTGGGGAAAAGCAAAGGATCAGTCTCCTCCATCACAGTGCTGCATGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0002376 GO:0006914 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007033 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009814 GO:0009816 GO:0009987 GO:0010150 GO:0016043 GO:0016236 GO:0022607 GO:0032501 GO:0032502 GO:0042742 GO:0043207 GO:0044085 GO:0044237 GO:0044248 GO:0045087 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061919 GO:0070925 GO:0071840 GO:0090693 GO:0098542 GO:0099402 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

ATG2_CAD ATG_C Chorein_N

Protein Analysis

382

Amino Acids

42.73

Weight (kDa)

8.66

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19190 AT3G19190 AT3G19190
fragaria_vesca	FvH4_2g06220
malus_domestica	MD05G1079500.v1.1 MD10G1093800.v1.1
prunus_persica	Prupe.8G123400_v2.0.a1 Prupe.8G123400_v2.0.a1
pyrus_communis	pycom05g07260 pycom10g07720
rosa_chinensis	RchiOBHm_Chr6g0256971
rosa_laevigata	RLG00000014666
rosa_multiflora	Rmu_co8396705.1_g000001 Rmu_sc0000659.1_g000038
rosa_roxburghii	Rroxscaffold_7G00208380
rosa_rugosa	Rorug05G0576000 Rorug05G0576100
rosa_samantha	Rh6AG094700 Rh6BG085900 Rh6CG082000 Rh6DG077700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	302
AccB7I	CCANNNNNTGG	1 cut(s)	30
AccII	CGCG	2 cut(s)	80, 223
AciI	CCGC	5 cut(s)	196, 203, 221, 223, 235
AclWI	GGATC	1 cut(s)	1120
AcoI	YGGCCR	1 cut(s)	987
AcsI	RAATTY	1 cut(s)	488
AfaI	GTAC	6 cut(s)	72, 523, 552, 768, 894, 1041
AfiI	CCNNNNNNNGG	4 cut(s)	30, 178, 184, 844
AflIII	ACRYGT	2 cut(s)	598, 716
AgeI	ACCGGT	1 cut(s)	958
AgsI	TTSAA	5 cut(s)	63, 374, 660, 703, 742
AjnI	CCWGG	3 cut(s)	177, 731, 1009
AluBI	AGCT	4 cut(s)	246, 288, 760, 1065
AluI	AGCT	4 cut(s)	246, 288, 760, 1065
Alw26I	GTCTC	2 cut(s)	625, 1123
AlwI	GGATC	1 cut(s)	1120
AoxI	GGCC	1 cut(s)	987
ApeKI	GCWGC	2 cut(s)	1062, 1135
ApoI	RAATTY	1 cut(s)	488
ArsI	GACNNNNNNTTYG	4 cut(s)	235, 267, 1101, 1133
AseI	ATTAAT	1 cut(s)	1005
AsiGI	ACCGGT	1 cut(s)	958
Asp700I	GAANNNNTTC	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	772, 956
AsuHPI	GGTGA	5 cut(s)	115, 121, 142, 455, 506
AvaII	GGWCC	2 cut(s)	772, 956
BalI	TGGCCA	1 cut(s)	989
BanI	GGYRCC	1 cut(s)	302
BauI	CACGAG	1 cut(s)	1089
BbvI	GCAGC	2 cut(s)	1074, 1122
BccI	CCATC	4 cut(s)	407, 497, 925, 1133
BceAI	ACGGC	1 cut(s)	222
BciT130I	CCWGG	3 cut(s)	179, 733, 1011
BcoDI	GTCTC	2 cut(s)	625, 1123
BfaI	CTAG	1 cut(s)	434
BisI	GCNGC	3 cut(s)	224, 1063, 1136
BlsI	GCNGC	3 cut(s)	225, 1064, 1137
BmcAI	AGTACT	1 cut(s)	768
Bme1390I	CCNGG	3 cut(s)	179, 733, 1011
Bme18I	GGWCC	2 cut(s)	772, 956
BmgT120I	GGNCC	2 cut(s)	772, 956
BmiI	GGNNCC	5 cut(s)	103, 304, 387, 957, 1016
BmrFI	CCNGG	3 cut(s)	179, 733, 1011
BmsI	GCATC	1 cut(s)	763
Bpu10I	CCTNAGC	1 cut(s)	167
BpuEI	CTTGAG	2 cut(s)	268, 881
Bsa29I	ATCGAT	1 cut(s)	1144
BsaBI	GATNNNNATC	1 cut(s)	507
BsaJI	CCNNGG	4 cut(s)	221, 843, 984, 1010
BsaWI	WCCGGW	2 cut(s)	360, 958
Bsc4I	CCNNNNNNNGG	4 cut(s)	30, 178, 184, 844
Bse118I	RCCGGY	1 cut(s)	958
Bse1I	ACTGG	1 cut(s)	774
Bse3DI	GCAATG	2 cut(s)	909, 1042
Bse8I	GATNNNNATC	1 cut(s)	507
BseBI	CCWGG	3 cut(s)	179, 733, 1011
BseCI	ATCGAT	1 cut(s)	1144
BseDI	CCNNGG	4 cut(s)	221, 843, 984, 1010
BseGI	GGATG	1 cut(s)	979
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	4 cut(s)	30, 178, 184, 844
BseMI	GCAATG	2 cut(s)	909, 1042
BseMII	CTCAG	1 cut(s)	353
BseNI	ACTGG	1 cut(s)	774
BseRI	GAGGAG	2 cut(s)	164, 1111
BseXI	GCAGC	2 cut(s)	1074, 1122
Bsh1236I	CGCG	2 cut(s)	80, 223
BshFI	GGCC	1 cut(s)	989
BshNI	GGYRCC	1 cut(s)	302
BshTI	ACCGGT	1 cut(s)	958
BshVI	ATCGAT	1 cut(s)	1144
BsiSI	CCGG	2 cut(s)	361, 959
BslFI	GGGAC	1 cut(s)	969
BslI	CCNNNNNNNGG	4 cut(s)	30, 178, 184, 844
BsmAI	GTCTC	2 cut(s)	625, 1123
BsmFI	GGGAC	1 cut(s)	969
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	989
Bsp1407I	TGTACA	2 cut(s)	550, 1039
Bsp143I	GATC	5 cut(s)	640, 886, 1093, 1112, 1141
BspACI	CCGC	5 cut(s)	196, 203, 221, 223, 235
BspANI	GGCC	1 cut(s)	989
BspCNI	CTCAG	1 cut(s)	352
BspDI	ATCGAT	1 cut(s)	1144
BspFNI	CGCG	2 cut(s)	80, 223
BspLI	GGNNCC	5 cut(s)	103, 304, 387, 957, 1016
BspPI	GGATC	1 cut(s)	1120
BspT107I	GGYRCC	1 cut(s)	302
BsrDI	GCAATG	2 cut(s)	909, 1042
BsrFI	RCCGGY	1 cut(s)	958
BsrGI	TGTACA	2 cut(s)	550, 1039
BsrI	ACTGG	1 cut(s)	774
BssAI	RCCGGY	1 cut(s)	958
BssECI	CCNNGG	4 cut(s)	221, 843, 984, 1010
BssMI	GATC	5 cut(s)	640, 886, 1093, 1112, 1141
BssSI	CACGAG	1 cut(s)	1089
BssT1I	CCWWGG	2 cut(s)	843, 984
Bst2BI	CACGAG	1 cut(s)	1089
Bst2UI	CCWGG	3 cut(s)	179, 733, 1011
Bst4CI	ACNGT	5 cut(s)	154, 443, 538, 994, 1132
Bst6I	CTCTTC	4 cut(s)	140, 265, 334, 659
BstAUI	TGTACA	2 cut(s)	550, 1039
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	4 cut(s)	167, 339, 761, 782
BstDSI	CCRYGG	1 cut(s)	221
BstENI	CCTNNNNNAGG	1 cut(s)	842
BstF5I	GGATG	1 cut(s)	979
BstFNI	CGCG	2 cut(s)	80, 223
BstKTI	GATC	5 cut(s)	643, 889, 1096, 1115, 1144
BstMAI	GTCTC	2 cut(s)	625, 1123
BstMBI	GATC	5 cut(s)	640, 886, 1093, 1112, 1141
BstMWI	GCNNNNNNNGC	1 cut(s)	243
BstNI	CCWGG	3 cut(s)	179, 733, 1011
BstNSI	RCATGY	2 cut(s)	602, 720
BstSCI	CCNGG	3 cut(s)	177, 731, 1009
BstUI	CGCG	2 cut(s)	80, 223
BstV1I	GCAGC	2 cut(s)	1074, 1122
BstXI	CCANNNNNNTGG	1 cut(s)	694
Bsu15I	ATCGAT	1 cut(s)	1144
BsuRI	GGCC	1 cut(s)	989
BsuTUI	ATCGAT	1 cut(s)	1144
BtgI	CCRYGG	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	979
BtsIMutI	CAGTG	2 cut(s)	830, 1137
Cac8I	GCNNGC	1 cut(s)	228
Cfr10I	RCCGGY	1 cut(s)	958
Cfr13I	GGNCC	2 cut(s)	772, 956
Cfr42I	CCGCGG	1 cut(s)	224
ClaI	ATCGAT	1 cut(s)	1144
Csp6I	GTAC	6 cut(s)	71, 522, 551, 767, 893, 1040
CspAI	ACCGGT	1 cut(s)	958
CviAII	CATG	3 cut(s)	599, 717, 1139
CviQI	GTAC	6 cut(s)	71, 522, 551, 767, 893, 1040
DdeI	CTNAG	4 cut(s)	167, 339, 761, 782
DpnI	GATC	5 cut(s)	642, 888, 1095, 1114, 1143
DpnII	GATC	5 cut(s)	640, 886, 1093, 1112, 1141
EaeI	YGGCCR	1 cut(s)	987
Eam1104I	CTCTTC	4 cut(s)	140, 265, 334, 659
EarI	CTCTTC	4 cut(s)	140, 265, 334, 659
EciI	GGCGGA	2 cut(s)	185, 224
Eco130I	CCWWGG	2 cut(s)	843, 984
Eco47I	GGWCC	2 cut(s)	772, 956
EcoNI	CCTNNNNNAGG	1 cut(s)	842
EcoRII	CCWGG	3 cut(s)	177, 731, 1009
EcoT14I	CCWWGG	2 cut(s)	843, 984
ErhI	CCWWGG	2 cut(s)	843, 984
FaeI	CATG	3 cut(s)	602, 720, 1142
FaqI	GGGAC	1 cut(s)	969
FatI	CATG	3 cut(s)	598, 716, 1138
FauI	CCCGC	2 cut(s)	210, 228
Fnu4HI	GCNGC	3 cut(s)	224, 1063, 1136
FokI	GGATG	1 cut(s)	966
Fsp4HI	GCNGC	3 cut(s)	224, 1063, 1136
FspBI	CTAG	1 cut(s)	434
GluI	GCNGC	3 cut(s)	224, 1063, 1136
HaeIII	GGCC	1 cut(s)	989
HapII	CCGG	2 cut(s)	361, 959
Hin1II	CATG	3 cut(s)	602, 720, 1142
HincII	GTYRAC	2 cut(s)	439, 798
HindII	GTYRAC	2 cut(s)	439, 798
HindIII	AAGCTT	1 cut(s)	244
HinfI	GANTC	1 cut(s)	380
HpaI	GTTAAC	1 cut(s)	439
HpaII	CCGG	2 cut(s)	361, 959
HphI	GGTGA	5 cut(s)	115, 121, 142, 455, 506
Hpy166II	GTNNAC	4 cut(s)	439, 551, 798, 851
Hpy188I	TCNGA	4 cut(s)	342, 385, 614, 811
Hpy188III	TCNNGA	1 cut(s)	1091
Hpy8I	GTNNAC	4 cut(s)	439, 551, 798, 851
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	3 cut(s)	121, 136, 940
HpyCH4III	ACNGT	5 cut(s)	154, 443, 538, 994, 1132
HpyCH4V	TGCA	4 cut(s)	725, 881, 907, 1138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	243
HpyF3I	CTNAG	4 cut(s)	167, 339, 761, 782
Hsp92II	CATG	3 cut(s)	602, 720, 1142
KspAI	GTTAAC	1 cut(s)	439
KspI	CCGCGG	1 cut(s)	224
Kzo9I	GATC	5 cut(s)	640, 886, 1093, 1112, 1141
LmnI	GCTCC	5 cut(s)	101, 363, 385, 710, 1059
Lsp1109I	GCAGC	2 cut(s)	1074, 1122
LweI	GCATC	1 cut(s)	763
MaeI	CTAG	1 cut(s)	434
MaeIII	GTNAC	2 cut(s)	148, 399
MalI	GATC	5 cut(s)	642, 888, 1095, 1114, 1143
MboI	GATC	5 cut(s)	640, 886, 1093, 1112, 1141
MboII	GAAGA	7 cut(s)	6, 127, 252, 258, 321, 676, 881
MfeI	CAATTG	1 cut(s)	1035
MlsI	TGGCCA	1 cut(s)	989
MluCI	AATT	4 cut(s)	405, 488, 692, 1035
MluNI	TGGCCA	1 cut(s)	989
MmeI	TCCRAC	1 cut(s)	799
Mox20I	TGGCCA	1 cut(s)	989
MroXI	GAANNNNTTC	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	989
MseI	TTAA	5 cut(s)	38, 422, 438, 1005, 1068
MslI	CAYNNNNRTG	1 cut(s)	1130
Msp20I	TGGCCA	1 cut(s)	989
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	2 cut(s)	361, 959
MspR9I	CCNGG	3 cut(s)	179, 733, 1011
MunI	CAATTG	1 cut(s)	1035
Mva1269I	GAATGC	1 cut(s)	230
MvaI	CCWGG	3 cut(s)	179, 733, 1011
MvnI	CGCG	2 cut(s)	80, 223
MwoI	GCNNNNNNNGC	1 cut(s)	243
NdeII	GATC	5 cut(s)	640, 886, 1093, 1112, 1141
NlaIII	CATG	3 cut(s)	602, 720, 1142
NlaIV	GGNNCC	5 cut(s)	103, 304, 387, 957, 1016
NmeAIII	GCCGAG	1 cut(s)	421
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	2 cut(s)	602, 720
PciI	ACATGT	2 cut(s)	598, 716
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PctI	GAATGC	1 cut(s)	230
PdmI	GAANNNNTTC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	380
PflMI	CCANNNNNTGG	1 cut(s)	30
PinAI	ACCGGT	1 cut(s)	958
PkrI	GCNGC	3 cut(s)	225, 1064, 1137
PscI	ACATGT	2 cut(s)	598, 716
PshBI	ATTAAT	1 cut(s)	1005
Psp6I	CCWGG	3 cut(s)	177, 731, 1009
PspGI	CCWGG	3 cut(s)	177, 731, 1009
PspN4I	GGNNCC	5 cut(s)	103, 304, 387, 957, 1016
PspPI	GGNCC	2 cut(s)	772, 956
RsaI	GTAC	6 cut(s)	72, 523, 552, 768, 894, 1041
RsaNI	GTAC	6 cut(s)	71, 522, 551, 767, 893, 1040
RseI	CAYNNNNRTG	1 cut(s)	1130
SacII	CCGCGG	1 cut(s)	224
SaqAI	TTAA	5 cut(s)	38, 422, 438, 1005, 1068
SatI	GCNGC	3 cut(s)	224, 1063, 1136
Sau3AI	GATC	5 cut(s)	640, 886, 1093, 1112, 1141
Sau96I	GGNCC	2 cut(s)	772, 956
ScaI	AGTACT	1 cut(s)	768
ScrFI	CCNGG	3 cut(s)	179, 733, 1011
SetI	ASST	8 cut(s)	128, 248, 284, 290, 316, 762, 1000, 1067
SfaNI	GCATC	1 cut(s)	763
Sfr303I	CCGCGG	1 cut(s)	224
SgrBI	CCGCGG	1 cut(s)	224
SinI	GGWCC	2 cut(s)	772, 956
SmiMI	CAYNNNNRTG	1 cut(s)	1130
SmlI	CTYRAG	2 cut(s)	283, 896
SmoI	CTYRAG	2 cut(s)	283, 896
Sse9I	AATT	4 cut(s)	405, 488, 692, 1035
SsiI	CCGC	5 cut(s)	196, 203, 221, 223, 235
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	3 cut(s)	177, 731, 1009
StyI	CCWWGG	2 cut(s)	843, 984
TaaI	ACNGT	5 cut(s)	154, 443, 538, 994, 1132
TaqI	TCGA	2 cut(s)	90, 1144
TasI	AATT	4 cut(s)	405, 488, 692, 1035
TatI	WGTACW	5 cut(s)	70, 550, 766, 892, 1039
TauI	GCSGC	1 cut(s)	226
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	5 cut(s)	38, 422, 438, 1005, 1068
Tru9I	TTAA	5 cut(s)	38, 422, 438, 1005, 1068
TscAI	CASTG	2 cut(s)	837, 1137
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	2 cut(s)	1062, 1135
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	5 cut(s)	85, 197, 252, 479, 968
TspGWI	ACGGA	2 cut(s)	239, 828
TspRI	CASTG	2 cut(s)	837, 1137
Van91I	CCANNNNNTGG	1 cut(s)	30
VpaK11BI	GGWCC	2 cut(s)	772, 956
VspI	ATTAAT	1 cut(s)	1005
XagI	CCTNNNNNAGG	1 cut(s)	842
XapI	RAATTY	1 cut(s)	488
XceI	RCATGY	2 cut(s)	602, 720
XmnI	GAANNNNTTC	1 cut(s)	86
XspI	CTAG	1 cut(s)	434
ZrmI	AGTACT	1 cut(s)	768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.