Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8396705.1

Orthogroup ID

OG0010386

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1124

Gene Structure 1124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8396705.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1016 bp

atgccttggaagggtaacggttgtgaggttgaagtggatgagcttgagcttgtgctagctccatgtacagagaagaattctccagctacagctgaaagcggtaaccagaaccaagatagtagtaaccacgggaagtttgatgctgatatgtcggacaatgccacaaaatctgcttccagggatgtgcatgaaggtgttaaaaccattgcaaagatggtaaagtggttgcttaccagcttccacgtaaggataaaaaggttgattgttgcctttgatccttgtttagagaagaacggaaagacatcaggatgttgctcaaccttggttcttcgaattgcagaaacagaatgtggaacaggtgtttctgaagatactaatcaaaatgctgatgcaagaactgagaactttctggggaatagtcaactaaccacctttgtcaagtttcaaggagcagtacttgaactgcttcaaatggatgatgttgataatcaaaaatgtattccatgtgtgacagaaagagcatttggtgaacttttttcagggggacgtcctccaggtgttaccactccaatcatgattgggaaaagaggtggattttcagggaacttaaaattaagtattccttggaagaatggatctctagacatagggaaagtggatgcagatgcttttattgaacctgtagaattaagatttcaaccaagcaccatcaaatggcttttacttgcttgggaagtatgcaaaagtatggagagggatcggagcaatcatatgccaactgattctattttccttgattcagcatctcactttgcttcaccaatatctgcttgttctgcaacagataaggtgacaccagttcgtgatagtttgcccaccgagtccgcttctttgacacttcaagaatcattaactgagggtctgctacccgggtcacgtgttatatcagattgggtaccattttatatgaataataatagaagccatggtatggaagaacttgattttggggcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0002376 GO:0006914 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007033 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009814 GO:0009816 GO:0009987 GO:0010150 GO:0016043 GO:0016236 GO:0022607 GO:0032501 GO:0032502 GO:0042742 GO:0043207 GO:0044085 GO:0044237 GO:0044248 GO:0045087 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061919 GO:0070925 GO:0071840 GO:0090693 GO:0098542 GO:0099402 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

ATG2_CAD ATG_C Chorein_N

Protein Analysis

338

Amino Acids

36.91

Weight (kDa)

5.0

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19190 AT3G19190 AT3G19190
fragaria_vesca	FvH4_2g06220
malus_domestica	MD05G1079500.v1.1 MD10G1093800.v1.1
prunus_persica	Prupe.8G123400_v2.0.a1 Prupe.8G123400_v2.0.a1
pyrus_communis	pycom05g07260 pycom10g07720
rosa_chinensis	RchiOBHm_Chr6g0256971
rosa_laevigata	RLG00000014666
rosa_multiflora	Rmu_co8396705.1_g000001 Rmu_sc0000659.1_g000038
rosa_roxburghii	Rroxscaffold_7G00208380
rosa_rugosa	Rorug05G0576000 Rorug05G0576100
rosa_samantha	Rh6AG094700 Rh6BG085900 Rh6CG082000 Rh6DG077700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	550
Acc65I	GGTACC	1 cut(s)	955
AccB1I	GGYRCC	1 cut(s)	955
AccB7I	CCANNNNNTGG	2 cut(s)	714, 991
AciI	CCGC	2 cut(s)	99, 885
AclWI	GGATC	3 cut(s)	269, 643, 765
AcsI	RAATTY	1 cut(s)	76
AcuI	CTGAAG	1 cut(s)	387
AcvI	CACGTG	1 cut(s)	938
AcyI	GRCGYC	1 cut(s)	547
AfaI	GTAC	3 cut(s)	67, 456, 957
AfiI	CCNNNNNNNGG	3 cut(s)	11, 714, 991
AflIII	ACRYGT	1 cut(s)	937
AgsI	TTSAA	7 cut(s)	32, 446, 461, 470, 677, 698, 902
AjnI	CCWGG	2 cut(s)	176, 553
AjuI	GAANNNNNNNTTGG	3 cut(s)	507, 539, 990
AluBI	AGCT	6 cut(s)	43, 49, 59, 86, 92, 237
AluI	AGCT	6 cut(s)	43, 49, 59, 86, 92, 237
AlwI	GGATC	3 cut(s)	269, 643, 765
Ama87I	CYCGRG	1 cut(s)	929
ApoI	RAATTY	1 cut(s)	76
Asp700I	GAANNNNTTC	1 cut(s)	465
Asp718I	GGTACC	1 cut(s)	955
AsuC2I	CCSGG	2 cut(s)	930, 931
AsuHPI	GGTGA	3 cut(s)	539, 810, 862
AsuII	TTCGAA	1 cut(s)	331
AsuNHI	GCTAGC	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	929
BanI	GGYRCC	1 cut(s)	955
BbrPI	CACGTG	1 cut(s)	938
BccI	CCATC	2 cut(s)	208, 716
BciT130I	CCWGG	2 cut(s)	178, 555
BcnI	CCSGG	2 cut(s)	930, 931
BfaI	CTAG	2 cut(s)	56, 641
BfmI	CTRYAG	2 cut(s)	87, 681
BmcAI	AGTACT	1 cut(s)	456
Bme1390I	CCNGG	4 cut(s)	178, 555, 930, 931
BmeT110I	CYCGRG	1 cut(s)	929
BmiI	GGNNCC	1 cut(s)	957
BmrFI	CCNGG	4 cut(s)	178, 555, 930, 931
BmsI	GCATC	5 cut(s)	130, 379, 649, 655, 812
BmtI	GCTAGC	1 cut(s)	59
BpmI	CTGGAG	2 cut(s)	66, 537
Bpu14I	TTCGAA	1 cut(s)	331
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	2 cut(s)	930, 931
BsaAI	YACGTR	2 cut(s)	244, 938
BsaBI	GATNNNNATC	1 cut(s)	375
BsaHI	GRCGYC	1 cut(s)	547
BsaJI	CCNNGG	7 cut(s)	5, 127, 177, 321, 623, 929, 985
Bsc4I	CCNNNNNNNGG	3 cut(s)	11, 714, 991
Bse1I	ACTGG	1 cut(s)	857
Bse3DI	GCAATG	1 cut(s)	204
Bse8I	GATNNNNATC	1 cut(s)	375
BseBI	CCWGG	2 cut(s)	178, 555
BseDI	CCNNGG	7 cut(s)	5, 127, 177, 321, 623, 929, 985
BseGI	GGATG	5 cut(s)	43, 187, 314, 481, 664
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	3 cut(s)	11, 714, 991
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	2 cut(s)	390, 906
BseNI	ACTGG	1 cut(s)	857
BshNI	GGYRCC	1 cut(s)	955
BsiHKCI	CYCGRG	1 cut(s)	929
BsiSI	CCGG	1 cut(s)	930
BslFI	GGGAC	1 cut(s)	558
BslI	CCNNNNNNNGG	3 cut(s)	11, 714, 991
BsmFI	GGGAC	1 cut(s)	558
BsoBI	CYCGRG	1 cut(s)	929
Bsp119I	TTCGAA	1 cut(s)	331
Bsp1407I	TGTACA	1 cut(s)	65
Bsp143I	GATC	3 cut(s)	274, 635, 757
Bsp19I	CCATGG	1 cut(s)	985
BspACI	CCGC	2 cut(s)	99, 885
BspCNI	CTCAG	2 cut(s)	391, 907
BspHI	TCATGA	1 cut(s)	573
BspLI	GGNNCC	1 cut(s)	957
BspOI	GCTAGC	1 cut(s)	59
BspPI	GGATC	3 cut(s)	269, 643, 765
BspT104I	TTCGAA	1 cut(s)	331
BspT107I	GGYRCC	1 cut(s)	955
BsrDI	GCAATG	1 cut(s)	204
BsrGI	TGTACA	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	857
BssECI	CCNNGG	7 cut(s)	5, 127, 177, 321, 623, 929, 985
BssMI	GATC	3 cut(s)	274, 635, 757
BssNI	GRCGYC	1 cut(s)	547
BssT1I	CCWWGG	4 cut(s)	5, 321, 623, 985
Bst2UI	CCWGG	2 cut(s)	178, 555
Bst4CI	ACNGT	1 cut(s)	20
BstACI	GRCGYC	1 cut(s)	547
BstAUI	TGTACA	1 cut(s)	65
BstBAI	YACGTR	2 cut(s)	244, 938
BstBI	TTCGAA	1 cut(s)	331
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	2 cut(s)	399, 915
BstDSI	CCRYGG	2 cut(s)	127, 985
BstEII	GGTNACC	1 cut(s)	101
BstF5I	GGATG	5 cut(s)	43, 187, 314, 481, 664
BstKTI	GATC	3 cut(s)	277, 638, 760
BstMBI	GATC	3 cut(s)	274, 635, 757
BstMWI	GCNNNNNNNGC	1 cut(s)	836
BstNI	CCWGG	2 cut(s)	178, 555
BstPI	GGTNACC	1 cut(s)	101
BstSCI	CCNGG	4 cut(s)	176, 553, 928, 929
BstSFI	CTRYAG	2 cut(s)	87, 681
BstX2I	RGATCY	1 cut(s)	635
BstYI	RGATCY	1 cut(s)	635
BtgI	CCRYGG	2 cut(s)	127, 985
BtsCI	GGATG	5 cut(s)	43, 187, 314, 481, 664
Cac8I	GCNNGC	1 cut(s)	57
CciI	TCATGA	1 cut(s)	573
Cfr9I	CCCGGG	1 cut(s)	929
Csp6I	GTAC	3 cut(s)	66, 455, 956
CviAII	CATG	5 cut(s)	63, 188, 504, 574, 986
CviJI	RGCY	8 cut(s)	43, 49, 59, 86, 92, 237, 718, 984
CviKI_1	RGCY	8 cut(s)	43, 49, 59, 86, 92, 237, 718, 984
CviQI	GTAC	3 cut(s)	66, 455, 956
DdeI	CTNAG	2 cut(s)	399, 915
DpnI	GATC	3 cut(s)	276, 637, 759
DpnII	GATC	3 cut(s)	274, 635, 757
Eco130I	CCWWGG	4 cut(s)	5, 321, 623, 985
Eco57I	CTGAAG	1 cut(s)	387
Eco72I	CACGTG	1 cut(s)	938
Eco88I	CYCGRG	1 cut(s)	929
Eco91I	GGTNACC	1 cut(s)	101
EcoO65I	GGTNACC	1 cut(s)	101
EcoRI	GAATTC	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	176, 553
EcoT14I	CCWWGG	4 cut(s)	5, 321, 623, 985
ErhI	CCWWGG	4 cut(s)	5, 321, 623, 985
FaeI	CATG	5 cut(s)	66, 191, 507, 577, 989
FalI	AAGNNNNNCTT	2 cut(s)	607, 639
FaqI	GGGAC	1 cut(s)	558
FatI	CATG	5 cut(s)	62, 187, 503, 573, 985
FauNDI	CATATG	1 cut(s)	771
FokI	GGATG	5 cut(s)	50, 194, 321, 488, 671
FspBI	CTAG	2 cut(s)	56, 641
GsuI	CTGGAG	2 cut(s)	66, 537
HapII	CCGG	1 cut(s)	930
Hin1I	GRCGYC	1 cut(s)	547
Hin1II	CATG	5 cut(s)	66, 191, 507, 577, 989
HincII	GTYRAC	1 cut(s)	422
HindII	GTYRAC	1 cut(s)	422
HinfI	GANTC	4 cut(s)	782, 797, 881, 905
HpaII	CCGG	1 cut(s)	930
HphI	GGTGA	3 cut(s)	539, 810, 862
Hpy166II	GTNNAC	2 cut(s)	422, 530
Hpy188I	TCNGA	4 cut(s)	154, 367, 762, 949
Hpy188III	TCNNGA	5 cut(s)	306, 574, 641, 863, 902
Hpy8I	GTNNAC	2 cut(s)	422, 530
HpyAV	CCTTC	2 cut(s)	4, 185
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	3 cut(s)	243, 547, 937
HpyCH4V	TGCA	7 cut(s)	187, 209, 338, 392, 662, 741, 839
HpyF10VI	GCNNNNNNNGC	1 cut(s)	836
HpyF3I	CTNAG	2 cut(s)	399, 915
HpySE526I	ACGT	3 cut(s)	243, 547, 937
Hsp92I	GRCGYC	1 cut(s)	547
Hsp92II	CATG	5 cut(s)	66, 191, 507, 577, 989
KpnI	GGTACC	1 cut(s)	959
Kzo9I	GATC	3 cut(s)	274, 635, 757
LmnI	GCTCC	3 cut(s)	64, 449, 762
LweI	GCATC	5 cut(s)	130, 379, 649, 655, 812
MaeI	CTAG	2 cut(s)	56, 641
MaeII	ACGT	3 cut(s)	243, 547, 937
MaeIII	GTNAC	7 cut(s)	14, 101, 122, 508, 559, 850, 933
MalI	GATC	3 cut(s)	276, 637, 759
MboI	GATC	3 cut(s)	274, 635, 757
MboII	GAAGA	6 cut(s)	85, 301, 320, 380, 640, 1007
MflI	RGATCY	1 cut(s)	635
MluCI	AATT	4 cut(s)	76, 333, 611, 686
MlyI	GAGTC	1 cut(s)	890
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	5 cut(s)	19, 561, 581, 747, 910
MroXI	GAANNNNTTC	1 cut(s)	465
MseI	TTAA	5 cut(s)	198, 608, 614, 689, 911
MslI	CAYNNNNRTG	2 cut(s)	192, 307
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	1 cut(s)	930
MspR9I	CCNGG	4 cut(s)	178, 555, 930, 931
MvaI	CCWGG	2 cut(s)	178, 555
MwoI	GCNNNNNNNGC	1 cut(s)	836
NciI	CCSGG	2 cut(s)	930, 931
NcoI	CCATGG	1 cut(s)	985
NdeI	CATATG	1 cut(s)	771
NdeII	GATC	3 cut(s)	274, 635, 757
NheI	GCTAGC	1 cut(s)	55
NlaIII	CATG	5 cut(s)	66, 191, 507, 577, 989
NlaIV	GGNNCC	1 cut(s)	957
NmuCI	GTSAC	3 cut(s)	508, 850, 933
NspV	TTCGAA	1 cut(s)	331
PagI	TCATGA	1 cut(s)	573
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	3 cut(s)	782, 797, 905
PflMI	CCANNNNNTGG	2 cut(s)	714, 991
PleI	GAGTC	1 cut(s)	889
PmaCI	CACGTG	1 cut(s)	938
PmlI	CACGTG	1 cut(s)	938
PpsI	GAGTC	1 cut(s)	889
Ppu21I	YACGTR	2 cut(s)	244, 938
Psp6I	CCWGG	2 cut(s)	176, 553
PspCI	CACGTG	1 cut(s)	938
PspEI	GGTNACC	1 cut(s)	101
PspGI	CCWGG	2 cut(s)	176, 553
PspN4I	GGNNCC	1 cut(s)	957
PsuI	RGATCY	1 cut(s)	635
PvuII	CAGCTG	1 cut(s)	92
RsaI	GTAC	3 cut(s)	67, 456, 957
RsaNI	GTAC	3 cut(s)	66, 455, 956
RseI	CAYNNNNRTG	2 cut(s)	192, 307
SaqAI	TTAA	5 cut(s)	198, 608, 614, 689, 911
Sau3AI	GATC	3 cut(s)	274, 635, 757
ScaI	AGTACT	1 cut(s)	456
SchI	GAGTC	1 cut(s)	890
ScrFI	CCNGG	4 cut(s)	178, 555, 930, 931
SfaNI	GCATC	5 cut(s)	130, 379, 649, 655, 812
SfcI	CTRYAG	2 cut(s)	87, 681
SfuI	TTCGAA	1 cut(s)	331
SmaI	CCCGGG	1 cut(s)	931
SmiMI	CAYNNNNRTG	2 cut(s)	192, 307
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	4 cut(s)	76, 333, 611, 686
SsiI	CCGC	2 cut(s)	99, 885
SspMI	CTAG	2 cut(s)	56, 641
StyD4I	CCNGG	4 cut(s)	176, 553, 928, 929
StyI	CCWWGG	4 cut(s)	5, 321, 623, 985
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	3 cut(s)	246, 550, 940
TaqI	TCGA	1 cut(s)	331
TasI	AATT	4 cut(s)	76, 333, 611, 686
TatI	WGTACW	2 cut(s)	65, 454
TfiI	GAWTC	3 cut(s)	782, 797, 905
Tru1I	TTAA	5 cut(s)	198, 608, 614, 689, 911
Tru9I	TTAA	5 cut(s)	198, 608, 614, 689, 911
TseFI	GTSAC	3 cut(s)	508, 850, 933
Tsp45I	GTSAC	3 cut(s)	508, 850, 933
TspDTI	ATGAA	2 cut(s)	204, 983
TspGWI	ACGGA	1 cut(s)	309
TspMI	CCCGGG	1 cut(s)	929
Van91I	CCANNNNNTGG	2 cut(s)	714, 991
XapI	RAATTY	1 cut(s)	76
XbaI	TCTAGA	1 cut(s)	640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XmaI	CCCGGG	1 cut(s)	929
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	2 cut(s)	56, 641
ZraI	GACGTC	1 cut(s)	548
ZrmI	AGTACT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.