Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010386

Physical Location & Seq

Genomic Coordinates Reverse (-)

77229086 .. 77229379

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0576000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGCATCCTCCATCTCCGTCCCAAGCGCCGCCGGTGGCCACCAGAACAGCCCCTATGCCAACAACCCGAGGCAAAATTTCGCCTCCACCATCAAAGACCCGAGACTCCGTCCTCATTAACCAAAGACTCATACCAGCTGCACCGTCCCCGAAAGCTGTGCCACTATCGTCGTTGGAAGACTGCAAGGAAATGGAGAAGAAGACGAAGCCCTTGCCTCGCCCAAATTCCCCATACGGTCGAACGCTGCCCCACCACGAATCAGTACTCAAATCACTCCGCCGCTTGCCACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0002376 GO:0006914 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007033 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009814 GO:0009816 GO:0009987 GO:0010150 GO:0016043 GO:0016236 GO:0022607 GO:0032501 GO:0032502 GO:0042742 GO:0043207 GO:0044085 GO:0044237 GO:0044248 GO:0045087 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061919 GO:0070925 GO:0071840 GO:0090693 GO:0098542 GO:0099402 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

ATG2_CAD ATG_C Chorein_N

Protein Analysis

97

Amino Acids

10.6

Weight (kDa)

10.74

Isoelectric Point (pI)

85.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19190 AT3G19190 AT3G19190
fragaria_vesca	FvH4_2g06220
malus_domestica	MD05G1079500.v1.1 MD10G1093800.v1.1
prunus_persica	Prupe.8G123400_v2.0.a1 Prupe.8G123400_v2.0.a1
pyrus_communis	pycom05g07260 pycom10g07720
rosa_chinensis	RchiOBHm_Chr6g0256971
rosa_laevigata	RLG00000014666
rosa_multiflora	Rmu_co8396705.1_g000001 Rmu_sc0000659.1_g000038
rosa_roxburghii	Rroxscaffold_7G00208380
rosa_rugosa	Rorug05G0576000 Rorug05G0576100
rosa_samantha	Rh6AG094700 Rh6BG085900 Rh6CG082000 Rh6DG077700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	29, 277, 280
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	2 cut(s)	75, 223
AfaI	GTAC	1 cut(s)	264
AluBI	AGCT	2 cut(s)	137, 155
AluI	AGCT	2 cut(s)	137, 155
Alw26I	GTCTC	1 cut(s)	96
Ama87I	CYCGRG	2 cut(s)	66, 99
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	2 cut(s)	137, 244
ApoI	RAATTY	2 cut(s)	75, 223
AspLEI	GCGC	1 cut(s)	28
AvaI	CYCGRG	2 cut(s)	66, 99
BalI	TGGCCA	1 cut(s)	38
BbsI	GAAGAC	2 cut(s)	183, 206
BbvI	GCAGC	2 cut(s)	124, 231
BccI	CCATC	2 cut(s)	19, 97
BcgI	CGANNNNNNTGC	4 cut(s)	139, 173, 193, 227
BcoDI	GTCTC	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	29
BisI	GCNGC	4 cut(s)	29, 138, 245, 280
BlsI	GCNGC	4 cut(s)	30, 139, 246, 281
BmcAI	AGTACT	1 cut(s)	264
BmeT110I	CYCGRG	2 cut(s)	66, 99
BmsI	GCATC	1 cut(s)	13
BpiI	GAAGAC	2 cut(s)	183, 206
BsaJI	CCNNGG	1 cut(s)	67
Bse118I	RCCGGY	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	1 cut(s)	4
BseXI	GCAGC	2 cut(s)	124, 231
BsgI	GTGCAG	1 cut(s)	123
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	1 cut(s)	38
BsiEI	CGRYCG	1 cut(s)	238
BsiHKCI	CYCGRG	2 cut(s)	66, 99
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	2 cut(s)	4, 130
BsmAI	GTCTC	1 cut(s)	96
BsmFI	GGGAC	2 cut(s)	4, 130
BsnI	GGCC	1 cut(s)	38
BsoBI	CYCGRG	2 cut(s)	66, 99
BspACI	CCGC	3 cut(s)	29, 277, 280
BspANI	GGCC	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	67
Bst4CI	ACNGT	2 cut(s)	144, 236
BstC8I	GCNNGC	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	4
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	28
BstMAI	GTCTC	1 cut(s)	96
BstMCI	CGRYCG	1 cut(s)	238
BstV1I	GCAGC	2 cut(s)	124, 231
BstV2I	GAAGAC	2 cut(s)	183, 206
BsuRI	GGCC	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	4
Cac8I	GCNNGC	1 cut(s)	284
CfoI	GCGC	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	263
CviJI	RGCY	5 cut(s)	38, 50, 137, 155, 208
CviKI_1	RGCY	5 cut(s)	38, 50, 137, 155, 208
CviQI	GTAC	1 cut(s)	263
EaeI	YGGCCR	1 cut(s)	36
EciI	GGCGGA	1 cut(s)	266
Eco88I	CYCGRG	2 cut(s)	66, 99
EcoT22I	ATGCAT	1 cut(s)	6
FaiI	YATR	4 cut(s)	56, 131, 232, 292
FaqI	GGGAC	2 cut(s)	4, 130
Fnu4HI	GCNGC	4 cut(s)	29, 138, 245, 280
Fsp4HI	GCNGC	4 cut(s)	29, 138, 245, 280
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	4 cut(s)	29, 138, 245, 280
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	1 cut(s)	28
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HinfI	GANTC	3 cut(s)	104, 126, 257
HpaII	CCGG	1 cut(s)	32
Hpy99I	CGWCG	1 cut(s)	172
HpyCH4III	ACNGT	2 cut(s)	144, 236
HpyCH4V	TGCA	3 cut(s)	4, 140, 183
HspAI	GCGC	1 cut(s)	26
LpnPI	CCDG	3 cut(s)	45, 55, 147
Lsp1109I	GCAGC	2 cut(s)	124, 231
LweI	GCATC	1 cut(s)	13
MboII	GAAGA	3 cut(s)	188, 208, 211
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	2 cut(s)	75, 223
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	2 cut(s)	98, 120
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	5 cut(s)	18, 62, 93, 122, 225
Mox20I	TGGCCA	1 cut(s)	38
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	1 cut(s)	32
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	257
PflFI	GACNNNGTC	1 cut(s)	107
PkrI	GCNGC	4 cut(s)	30, 139, 246, 281
PleI	GAGTC	2 cut(s)	98, 120
PpsI	GAGTC	2 cut(s)	98, 120
PsyI	GACNNNGTC	1 cut(s)	107
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	4 cut(s)	29, 138, 245, 280
ScaI	AGTACT	1 cut(s)	264
SchI	GAGTC	2 cut(s)	98, 120
SetI	ASST	2 cut(s)	139, 157
SfaNI	GCATC	1 cut(s)	13
SgrAI	CRCCGGYG	1 cut(s)	31
Sse9I	AATT	2 cut(s)	75, 223
SsiI	CCGC	3 cut(s)	29, 277, 280
TaaI	ACNGT	2 cut(s)	144, 236
TaqI	TCGA	1 cut(s)	238
TasI	AATT	2 cut(s)	75, 223
TatI	WGTACW	1 cut(s)	262
TauI	GCSGC	2 cut(s)	31, 282
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TseI	GCWGC	2 cut(s)	137, 244
TspGWI	ACGGA	2 cut(s)	6, 97
Tth111I	GACNNNGTC	1 cut(s)	107
XapI	RAATTY	2 cut(s)	75, 223
ZrmI	AGTACT	1 cut(s)	264
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.