Rroxscaffold_7G00208380

Autophagy-related protein C terminal domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
58401247 .. 58412472
11226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00208380.1

Sequence Viewer

Length: 5946 bp
ATGTGGAACATCGCGAAGTCGGCGGAGGCGATGTTCTCGCGGTGGGCCGTCAAGCGGGTCTGTAAGTTCGTGTTGAAGAAGAAGCTGGGCCAGTTCATTCTCGGCGACATCGATGTCGACCAGCTCGACGTTCAGTTCGCCGACGGCACCATTCAGCTCAGCGACCTCGCCCTCAACGTCGATTTTCTTAACCAGAAGATTGGTGCAGCAGCATCAATGATGATAAAAGAAGGATCTATTGGTTCACTATTAGTTAGGATGCCTTGGAAGGGTAACGGTTGTGAGGTTGAAGTGGATGAGCTTGAGCTTGTGCTAGCTCCATGTACAGAGAAGAATTCTCCAGCTACAGCTGAAAGTGGTAACCAGAACCAAGATAATAGTAACCCCGGGAAGTTTGATGCTGATATGCCGGACAATGCCACAAAAACTGCTTCCAGGGATGTGCATGAAGGTGTTAAAACCATTGCAAAGATGGTAAAGTGGTTGCTTACCAGCTTCCACGTAAGGATAAAAAGGTTGATTGTTGCCTTTGATCCTTGTTTAGAGAAGAACGGAAAGACATCAGGATGTCACTCAACCTTGGTTCTTCGAATTGCAGAAACAGAATGTGGAACAGGTGTTTCTGAAGATACTAATCAAAATGCTGATGCAAGAACTGAGAACTTTCTGGGGAATAGTCAACTAACCACCTTTGTCAAGTTTCAAGGAGCAGTACTTGAACTGCTTCAAATGGATGATGTTGATAATCAAAAAAGTATTCCATGTGTGACAGAAAGAACATTTGGTGAACTTTTTTCAGGGGGACGTCCTCCAGGTGTTACCACTCCAATCATGACTGGGAGAAGAGGTGGATTTTCAGGGAACTTAAAATTAAGTATTCCTTGGAAGAATGGATCTCTAGACATAGGGAAAGTGGATGCAGATGCTTTTATTGAACCTGTAGAATTAAGATTTCAACCAAGCACCATCAAATGGCTTTTACTTGCTTGGGAAGTATGCAAAAGTATGGAGAGGGATCAGAGCAATCATATGGCAACTGATTCTATTTTCCTTGATTCAGCATCTCACTTTGCTTCAACAATATCTGCTTGTTCTGCAACAGATAAGGTGATGCCAGTTCGTGGTAGTTTGCCCACCGAGTCCGCTTCTTTGACACTTCAAGAATCATTAACTGAGGGTCTGCTACCCGGGTCACGTGTTATATCAGATTGGGTACCATTTTATATGAATAATAATAGAAGCCATGGTATGGAAGAACTTGATTTTGGGGCAAGTGTGGACCAGTTTTTTGAATGCTTTGATGGAATGAGAAGTTCCCAGTCAGCATTAGGAAGTAGTGGAATGTGGAATTGGACATGTTCTGTTGTCAGTGCTATCACAGCTGTATCCAGCCTTGCTTCTGGATCTTTGCATGTTGCCCCTGAACAGCAGCCAGTTGAAACCAATCTTAAAGCGACTTTAGCTGGGATTTCTGTTGTATTTCCATTCCAAGATGAAAACCAGAATCATTTGTGTGATACAAAGGGTGATTTAGGTTCTAGTTCAGATGTTCTATACCTATGTGTAGAATGCCGAGATATCCTTCTTGTTATGCAGGTGTCTTCTCGGCATATGAGGTTTGAAGGAAAAATGGACTATATTGAGGTTGCCAATTACTCAAGTCATAAAGACGGTACCTTGGAGTTGGGTTTGCAAGGGTGTAACAACAACGTTAAAAGCCAAACTTCTTCAATTCAACATCTTCAAGCTGATGTTCAAAGTGTTCTTCCTTTGCATGCCTCATCTTATTATTCGGCTGAATCAAATGGTTTAGCTGCTGAAGGTTTTCCATTTGGATATAGGGATGATTTAGTCAGAATTACATTGCTTAAAACTTCAGGTGTCACTTATTGTCAATGTACTGTCAGTTCTAGTTCATCTGATGGGAGTTCAACTGGGCCTACATCATTTTCACTGAAACTGCCACACTTTGTTTTCTGGGTGGACTTCTCTTTGCTAAATATTCTGTTAGAACTGTTGAAGGAAATTGGAAAGACTGTTGAAGTGAATGACCAGGCCGAGTTTTCTTCGGAGGCCTCTAATAAGATCCATGGATCATCTCATAGGGATCTTAGAAGAGCTTCTAGTTGTGTTACAACCTTGTCTTCAACAGATAGTGTGCGAGGTGATATATTTATCCCTAATGCACGGATAATTCTTTGTTTATGTTTCAATGGTGGTGAAAGTGTTAGAAGCTTCTCCTCCTGGGATCAATTTGTTGCTCTGGAATTTACTTCACCTTCGACTTGTGACAAAGGCATGATTCAAGACCATGGTCCTACCTTTGATGCAAGTTCAGAGAAAAGGTATTCTTCAACTGTCACACGTTCTTTACAGTTGAATGTTGGTGATCTTGATGTTTTCCTGGTCAGTCCTCAAAGTAAAGATAATGCAGAAATCAGATCTGGCAAGATGCAGAGGCTAACACTTACTGCACAAAAAGTAATGTCTGTCAGCAACAGAAAAGGCAGTCTTTCTGTCATTAGTATGCTTTGGCAAGAGGGTTATGTGACTGGTCCTTGGATAGCAAAGAAAGCTAAGTGCCTCGCTACTTTTGAGGAATCAAGGAGCATTTCCAAATTTGTGGGAAAAGATCATGAGTTTGCTTCTGTATCTACTGTGAAAGATCTTAAGGATTTAAGCTCCCAGACACGACAAGAGATTATTTTGAGCTCTGCATTTTTCCTACATGTTTGTCTACCTGCTGTTACAATAAAGTTAGACAATCCTCAATATAAAGAGTTGTGTCATCTTTTGGATCAAGTGATGAATGACATATCTGGTGTGGATCTCGATTCTATCAATGATAAGGAAGAATCTTCCATGCCTCAGACATCTATCCTTGTGGACTGTGATTCTGTTGAAATATTGATTAACTTGGATGTGAAGGAGACTGTCCCAGGCTCAATGCAGAGTGAACTTCCTGGGACGTGGAATCGTCTAAGACTGAAAGTTCAGAAGCTTGAAATGCTATCTGTTTCGAATATTGGAGGTATTCCAGGTGCCACTTTTTTCTGGCTGGCACACGGTGAAGGCAAATTGTGGGGTTCTATCACCAGTATTCCTGATCAGGAGTTTCTTCTGATCACATGTAGCAACTCGACAATGAAACGTGGTGATGGAGGAGGTTCAAATGCATTATCATCGATATTTGCTGGTTCTGATATTGTACATCTGTGGGATCCTACAGGTTTTCATGGTTCTACATCTATAACGGTCAGATGTGCCACAATTGTTGCTGTTGGGGGTCGCTTGGATTGGCCGGATGCACTATGCTCCTTTTTCATTATTCCTTCTGAAATTGAACAAGCAGAGGACAAGTGTAATCAAAAGGACGATGCACCTCATGGATCTTCTTTTGTGCTTAACTTGGTTGATATTGGATTAAGCTATGAACCCTACCAAAAGAATATGGTGGTCAGGAGTGAACACTCAGGGTCCAGTTGTTCGTCTGTCAAAGTGACATGTGAAGAATATGTTTCTTGTCTTTTGGCTGCATCTTCCTTGAATCTTTCAACTTCAACCGTGGGAGATTCCACAGAAATGAATTACAAAATCAGAGTGCGAGATCTTGGGCTTCTTCTCCGTGTAATGTTAAAGCCTGAGGATATTGGTGGCACTTACAGTGCAGAGCATCTTCACAAGATTGGGTATGTGAAAGTTGCAAGGGAGGCACTCGTTGAAGCATATTTGAGAACTAATTGTAAAAATGGTCTTCTCTGGGAGGTAGAATGTTCAAAGTCCCACATTTTTGTGGAAACATGCCATGACACAATGTCTAGTCTGATTCGTTTGGCTGCTCAAATCCAACAGCTTTTTGCTCCTGACCTGGAGGAATCAATTGTGCATTTGCAGACAAGGTGGAATAAATTTCAGCAGGAACAAGAGAGGAGAGGTTTGGCTGATGAAATCAGGATATTCGATAGTGAGTCTCCAACTGCTCAATTACACACGTCTGGTCTAGTTACAGAGAGAGAGCCTCAGTTGGTTGGGTTAATGGATGAGATATCAGAAGATGCATTTCGAGATAATAATCACACCTACCAATATGACTCTTCTGAGTCACAAATTGGTATATCATCTGATGAGGACCTTGGAGAGGTGTGTTACTCACGTATTGGAACTCCTGATATTTTCTTGCCTGGTACATCTTATGATGGGTCAGTGCCATCAGTTGAATCAGAAAGTAGTCAAACATCATTCCTACAGGAAGGTAATGTTTTGGAGTTAATAGAAGGGTATTGTTTATCTGAGTTACAACGACCTCTCTCGGAATTGTCTGTTGGCAGGCAATCATCTCAGGAGATTGTGAAATCCCAGTCCAAGAATGCCAGAATTGGAGATGGGTCAAGAGAAAATCATGGATGGTATGGCACCTCTGTAAAAATTTTAGAAAATCATATTCCAGAAACGAGTGAAAGTAGTAAGGAACAATTTGTCGAAGACAAGCTTCCTTCTACTGGCAGTACAAATTGCAATGATTTAGGGAAAGCAATTGGACGTGTACTCCTTAAGAACATTGATGTTAGATGGAGAATGCTTGCTGGCTCTGACTGGCATGATTCTAGAGCAACTGGTCAGCGGTCGGGGGATTTTACTGGAAGGGATGCTACTGTATGCCTGGAGTTCTCACTATGTGGGATGGAATTTCAATATGACGTTTTCCCAGTTGGTGGAATATGTGTATCCAAGCTTTCTCTTTCGGTTCAAGACTTTTATCTATATGATAAGAGCAAAGATGCTCCTTGGAAACTGGTGCTAGGACATTATCATTCAAAGGATCATCCTCGGAAATCATCTTCAAAAGGATTCAAGCTGGACTTAGAAGCGGTCAGACCAGATCCTCTGACACCTCTCGAAGAATATAGGTTGCGAGTCGCATTCCTTCCCATGTTGTTACATCTTCACCAGTGCCAGCTTGATTTTCTCATTGGCTTCTTTGGCCCAAAGAGCTCTTCAGTTGATCAGTCTTCAGGTTGTTATCAAGATCCAGATGGTTCAAAAGTGTTGCCAACAAAGATTACATCTACTAACTGTTTTAGAGTTTCATATTTCCCTCTTCAGAAGTTCGATATATGGCCTATTCTTGTTAGGGTGGACTACAGTCCCAGTCGTGTTGATCTGGCAGCATTAAGAGGCGGGAAGTATGTAGAACTTGTAAATATTGTCCCATGGAAGGGGGTCGAGCTACAGCTTAAACGTGTTCATGCCGTTGGTATTTATGGCTGGGGTAGTGTATGTGAAACAATTATAGGGGAGTGGTTAGAAGACATCTCTCAAAATCAGATTCATAAAATATTGCAAGGTCTTCCTACCATTCGATCATTGGTTGCTGTTGGTGCCGGTGCAGCGAAGCTGGTTTCTTTGCCAGTTGAGCACTATAGGAAGGACAAGAGGGTAGTCAAGGGAATGCAAAGAGAAAATTTCGTGACAGGTACAATTGCATTTCTTAGAAGTATTTCTCTTGAAGCTGTTGGGCTTGGAGTACATTTAGCAGCTGGGGCTCATGATATTTTGGTCCAAGCTGAATATTTGCTTACAAGCATTCCTCCTTCTGTACCCTGGTCAGCACCACATAGAGTAAAATCCAGTGCTAGATCCAATCAACCTAAAGATGCCCAACAAGGAATTTATCAGGCCTATGAAAGTCTCAGTGATGGCTTGGGGAAATCTGCTTCTGCCTTGGTTCGGACGCCCCTGAAAAAATATCAGCGTGGAGCTGGTGCTGGGTCTGCTCTGGCATCTGCTGTTCGGGCAGTCCCTGCAGCTGCTATAGCTCCAGCCTCTGCTTGTGCAAGTGCTGTACATTGTGCTCTTCTTGGCTTCAGAAATAGCCTTGATCCTGAGCGTAAGAAAGAGTCTATGGAGAAATATCTAGGTCCCCCTCAGCCATGGGAACAAAACTGA

Protein Analysis

1981

Amino Acids

217.47

Weight (kDa)

5.49

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATG2_CAD PF13329 17 - 1538 3.4e-52 Autophagy-related protein 2
ATG2_CAD PF13329 1548 - 1971 9.5e-121 Autophagy-related protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1585
AasI GACNNNNNNGTC 1 cut(s) 113
AatII GACGTC 1 cut(s) 808
Acc36I ACCTGC 2 cut(s) 1585, 2749
Acc65I GGTACC 2 cut(s) 1213, 1673
AccB1I GGYRCC 6 cut(s) 146, 1213, 1673, 3041, 4412, 5378
AccB7I CCANNNNNTGG 4 cut(s) 972, 1121, 1249, 4712
AccI GTMKAC 2 cut(s) 117, 2737
AccII CGCG 2 cut(s) 14, 40
AciI CCGC 7 cut(s) 23, 40, 55, 1143, 4621, 4868, 5178
AclI AACGTT 1 cut(s) 1710
AcoI YGGCCR 1 cut(s) 3299
AcsI RAATTY 8 cut(s) 334, 2267, 2618, 3908, 4425, 4685, 5461, 5667
AcuI CTGAAG 7 cut(s) 645, 1839, 1860, 4980, 4995, 5084, 5848
AcvI CACGTG 1 cut(s) 1196
AcyI GRCGYC 2 cut(s) 805, 5732
AdeI CACNNNGTG 2 cut(s) 3068, 4676
AflII CTTAAG 2 cut(s) 2669, 4550
AflIII ACRYGT 9 cut(s) 1195, 1355, 2363, 2728, 3128, 3503, 3990, 4540, 5239
AhdI GACNNNNNGTC 1 cut(s) 3814
AjiI CACGTC 3 cut(s) 2970, 3993, 4541
AloI GAACNNNNNNTCC 2 cut(s) 17, 49
Alw21I GWGCWC 4 cut(s) 2714, 4994, 5418, 5854
Alw26I GTCTC 3 cut(s) 2924, 3975, 5693
AlwNI CAGNNNCTG 2 cut(s) 5801, 5825
Ama87I CYCGRG 2 cut(s) 386, 1187
AoxI GGCC 9 cut(s) 45, 88, 1937, 2055, 2073, 3299, 4981, 5117, 5676
ApoI RAATTY 8 cut(s) 334, 2267, 2618, 3908, 4425, 4685, 5461, 5667
ArsI GACNNNNNNTTYG 4 cut(s) 119, 151, 1271, 1303
Asp700I GAANNNNTTC 4 cut(s) 723, 1824, 2119, 5497
Asp718I GGTACC 2 cut(s) 1213, 1673
AsuC2I CCSGG 4 cut(s) 387, 388, 1188, 1189
AsuII TTCGAA 2 cut(s) 589, 3020
AsuNHI GCTAGC 1 cut(s) 313
AvaI CYCGRG 2 cut(s) 386, 1187
AvaII GGWCC 7 cut(s) 1279, 2315, 2555, 3477, 4129, 5557, 5918
AxyI CCTNAGG 1 cut(s) 3642
BaeI ACNNNNGTAYC 2 cut(s) 1368, 1401
BamHI GGATCC 1 cut(s) 3220
BanI GGYRCC 6 cut(s) 146, 1213, 1673, 3041, 4412, 5378
BanII GRGCYC 3 cut(s) 2714, 4994, 5545
BarI GAAGNNNNNNTAC 2 cut(s) 4633, 4665
BbrPI CACGTG 1 cut(s) 1196
BbsI GAAGAC 7 cut(s) 1593, 2136, 3746, 4488, 5001, 5313, 5339
Bbv12I GWGCWC 4 cut(s) 2714, 4994, 5418, 5854
BbvCI CCTCAGC 1 cut(s) 5925
BceAI ACGGC 3 cut(s) 32, 160, 5234
BcgI CGANNNNNNTGC 2 cut(s) 3165, 3199
BciVI GTATCC 2 cut(s) 1396, 4735
BclI TGATCA 3 cut(s) 3106, 3123, 5002
BcnI CCSGG 4 cut(s) 387, 388, 1188, 1189
BcoDI GTCTC 3 cut(s) 2924, 3975, 5693
BfmI CTRYAG 9 cut(s) 345, 939, 3225, 4244, 5140, 5228, 5419, 5802, 5811
BfrI CTTAAG 2 cut(s) 2669, 4550
BfuAI ACCTGC 2 cut(s) 1585, 2749
BfuI GTATCC 2 cut(s) 1396, 4735
BglII AGATCT 3 cut(s) 2441, 2665, 3607
BlpI GCTNAGC 1 cut(s) 158
BmcAI AGTACT 1 cut(s) 714
Bme18I GGWCC 7 cut(s) 1279, 2315, 2555, 3477, 4129, 5557, 5918
BmeRI GACNNNNNGTC 1 cut(s) 3814
BmeT110I CYCGRG 2 cut(s) 386, 1187
BmgBI CACGTC 3 cut(s) 2970, 3993, 4541
BmiI GGNNCC 9 cut(s) 148, 1215, 1675, 3043, 3222, 3478, 4414, 5380, 5920
BmrI ACTGGG 6 cut(s) 846, 1312, 1944, 4351, 4700, 5142
BmtI GCTAGC 1 cut(s) 317
BmuI ACTGGG 6 cut(s) 846, 1312, 1944, 4351, 4700, 5142
BoxI GACNNNNGTC 2 cut(s) 2313, 5142
BpiI GAAGAC 7 cut(s) 1593, 2136, 3746, 4488, 5001, 5313, 5339
BplI GAGNNNNNCTC 2 cut(s) 4003, 4035
BpmI CTGGAG 5 cut(s) 324, 795, 3890, 4682, 5802
Bpu10I CCTNAGC 2 cut(s) 5883, 5925
Bpu1102I GCTNAGC 1 cut(s) 158
Bpu14I TTCGAA 2 cut(s) 589, 3020
BpuEI CTTGAG 2 cut(s) 323, 1642
BpuMI CCSGG 4 cut(s) 387, 388, 1188, 1189
Bsa29I ATCGAT 2 cut(s) 111, 3185
BsaAI YACGTR 3 cut(s) 502, 1196, 4154
BsaBI GATNNNNATC 2 cut(s) 633, 4071
BsaHI GRCGYC 2 cut(s) 805, 5732
BsaXI ACNNNNNCTCC 6 cut(s) 17, 47, 832, 862, 4530, 4560
Bse118I RCCGGY 1 cut(s) 5381
Bse21I CCTNAGG 1 cut(s) 3642
Bse3DI GCAATG 3 cut(s) 462, 1862, 4522
Bse8I GATNNNNATC 2 cut(s) 633, 4071
BseCI ATCGAT 2 cut(s) 111, 3185
BseJI GATNNNNATC 2 cut(s) 633, 4071
BseMI GCAATG 3 cut(s) 462, 1862, 4522
BseRI GAGGAG 3 cut(s) 2230, 3177, 3943
BseYI CCCAGC 5 cut(s) 85, 1463, 5265, 5537, 5765
BsgI GTGCAG 4 cut(s) 225, 2457, 3687, 5406
Bsh1236I CGCG 2 cut(s) 14, 40
Bsh1285I CGRYCG 1 cut(s) 4625
BshFI GGCC 9 cut(s) 47, 90, 1939, 2057, 2075, 3301, 4983, 5119, 5678
BshNI GGYRCC 6 cut(s) 146, 1213, 1673, 3041, 4412, 5378
BshVI ATCGAT 2 cut(s) 111, 3185
BsiEI CGRYCG 1 cut(s) 4625
BsiHKAI GWGCWC 4 cut(s) 2714, 4994, 5418, 5854
BsiHKCI CYCGRG 2 cut(s) 386, 1187
BsiSI CCGG 5 cut(s) 387, 410, 1188, 3302, 5382
BslFI GGGAC 8 cut(s) 816, 2921, 2980, 3766, 5130, 5192, 5783, 5904
BsmAI GTCTC 3 cut(s) 2924, 3975, 5693
BsmFI GGGAC 8 cut(s) 816, 2921, 2980, 3766, 5130, 5192, 5783, 5904
BsmI GAATGC 7 cut(s) 1298, 1574, 4372, 4581, 4919, 5454, 5583
BsnI GGCC 9 cut(s) 47, 90, 1939, 2057, 2075, 3301, 4983, 5119, 5678
BsoBI CYCGRG 2 cut(s) 386, 1187
Bsp119I TTCGAA 2 cut(s) 589, 3020
Bsp1286I GDGCHC 5 cut(s) 2714, 4994, 5418, 5545, 5854
Bsp1407I TGTACA 3 cut(s) 323, 3208, 5842
Bsp1720I GCTNAGC 1 cut(s) 158
Bsp19I CCATGG 5 cut(s) 1243, 2089, 2311, 5210, 5930
Bsp68I TCGCGA 1 cut(s) 14
BspACI CCGC 7 cut(s) 23, 40, 55, 1143, 4621, 4868, 5178
BspANI GGCC 9 cut(s) 47, 90, 1939, 2057, 2075, 3301, 4983, 5119, 5678
BspDI ATCGAT 2 cut(s) 111, 3185
BspFNI CGCG 2 cut(s) 14, 40
BspHI TCATGA 3 cut(s) 831, 2635, 5545
BspLI GGNNCC 9 cut(s) 148, 1215, 1675, 3043, 3222, 3478, 4414, 5380, 5920
BspMAI CTGCAG 1 cut(s) 5806
BspMI ACCTGC 2 cut(s) 1585, 2749
BspOI GCTAGC 1 cut(s) 317
BspQI GCTCTTC 3 cut(s) 2110, 4999, 5859
BspT104I TTCGAA 2 cut(s) 589, 3020
BspT107I GGYRCC 6 cut(s) 146, 1213, 1673, 3041, 4412, 5378
BspTI CTTAAG 2 cut(s) 2669, 4550
BsrDI GCAATG 3 cut(s) 462, 1862, 4522
BsrFI RCCGGY 1 cut(s) 5381
BsrGI TGTACA 3 cut(s) 323, 3208, 5842
BssAI RCCGGY 1 cut(s) 5381
BssNI GRCGYC 2 cut(s) 805, 5732
Bst6I CTCTTC 6 cut(s) 838, 2110, 4099, 4999, 5103, 5859
BstACI GRCGYC 2 cut(s) 805, 5732
BstAFI CTTAAG 2 cut(s) 2669, 4550
BstAPI GCANNNNNTGC 1 cut(s) 5801
BstAUI TGTACA 3 cut(s) 323, 3208, 5842
BstBAI YACGTR 3 cut(s) 502, 1196, 4154
BstBI TTCGAA 2 cut(s) 589, 3020
BstC8I GCNNGC 7 cut(s) 315, 1776, 3060, 4328, 4581, 4585, 4955
BstDSI CCRYGG 6 cut(s) 1243, 2089, 2311, 3564, 5210, 5930
BstEII GGTNACC 1 cut(s) 359
BstENI CCTNNNNNAGG 1 cut(s) 4136
BstFNI CGCG 2 cut(s) 14, 40
BstMAI GTCTC 3 cut(s) 2924, 3975, 5693
BstMCI CGRYCG 1 cut(s) 4625
BstNSI RCATGY 7 cut(s) 1359, 1415, 1778, 2732, 3132, 3507, 3804
BstPAI GACNNNNGTC 2 cut(s) 2313, 5142
BstPI GGTNACC 1 cut(s) 359
BstSFI CTRYAG 9 cut(s) 345, 939, 3225, 4244, 5140, 5228, 5419, 5802, 5811
BstUI CGCG 2 cut(s) 14, 40
BstV2I GAAGAC 7 cut(s) 1593, 2136, 3746, 4488, 5001, 5313, 5339
BstXI CCANNNNNNTGG 2 cut(s) 200, 2623
Bsu15I ATCGAT 2 cut(s) 111, 3185
Bsu36I CCTNAGG 1 cut(s) 3642
BsuI GTATCC 2 cut(s) 1396, 4735
BsuRI GGCC 9 cut(s) 47, 90, 1939, 2057, 2075, 3301, 4983, 5119, 5678
BsuTUI ATCGAT 2 cut(s) 111, 3185
BtgI CCRYGG 6 cut(s) 1243, 2089, 2311, 3564, 5210, 5930
BtgZI GCGATG 1 cut(s) 44
BtrI CACGTC 3 cut(s) 2970, 3993, 4541
BtsIMutI CAGTG 7 cut(s) 1375, 1952, 3670, 4209, 4955, 5635, 5698
BtuMI TCGCGA 1 cut(s) 14
BveI ACCTGC 2 cut(s) 1585, 2749
Cac8I GCNNGC 7 cut(s) 315, 1776, 3060, 4328, 4581, 4585, 4955
CaiI CAGNNNCTG 2 cut(s) 5801, 5825
CciI TCATGA 3 cut(s) 831, 2635, 5545
Cfr10I RCCGGY 1 cut(s) 5381
Cfr9I CCCGGG 2 cut(s) 386, 1187
ClaI ATCGAT 2 cut(s) 111, 3185
CseI GACGC 1 cut(s) 5740
CspCI CAANNNNNGTGG 2 cut(s) 3256, 3291
DraIII CACNNNGTG 2 cut(s) 3068, 4676
DrdI GACNNNNNNGTC 1 cut(s) 113
DriI GACNNNNNGTC 1 cut(s) 3814
DseDI GACNNNNNNGTC 1 cut(s) 113
EaeI YGGCCR 1 cut(s) 3299
Eam1104I CTCTTC 6 cut(s) 838, 2110, 4099, 4999, 5103, 5859
Eam1105I GACNNNNNGTC 1 cut(s) 3814
EarI CTCTTC 6 cut(s) 838, 2110, 4099, 4999, 5103, 5859
EciI GGCGGA 1 cut(s) 38
Ecl136II GAGCTC 2 cut(s) 2712, 4992
Eco147I AGGCCT 2 cut(s) 2075, 5678
Eco24I GRGCYC 3 cut(s) 2714, 4994, 5545
Eco32I GATATC 2 cut(s) 1579, 4047
Eco47I GGWCC 7 cut(s) 1279, 2315, 2555, 3477, 4129, 5557, 5918
Eco53kI GAGCTC 2 cut(s) 2712, 4992
Eco57I CTGAAG 7 cut(s) 645, 1839, 1860, 4980, 4995, 5084, 5848
Eco72I CACGTG 1 cut(s) 1196
Eco81I CCTNAGG 1 cut(s) 3642
Eco88I CYCGRG 2 cut(s) 386, 1187
Eco91I GGTNACC 1 cut(s) 359
EcoICRI GAGCTC 2 cut(s) 2712, 4992
EcoNI CCTNNNNNAGG 1 cut(s) 4136
EcoO109I RGGNCCY 2 cut(s) 4129, 5918
EcoO65I GGTNACC 1 cut(s) 359
EcoRI GAATTC 1 cut(s) 334
EcoRV GATATC 2 cut(s) 1579, 4047
EcoT22I ATGCAT 2 cut(s) 3178, 4060
EcoT38I GRGCYC 3 cut(s) 2714, 4994, 5545
FaqI GGGAC 8 cut(s) 816, 2921, 2980, 3766, 5130, 5192, 5783, 5904
FauI CCCGC 2 cut(s) 48, 5171
FauNDI CATATG 2 cut(s) 1029, 1611
FbaI TGATCA 3 cut(s) 3106, 3123, 5002
FblI GTMKAC 2 cut(s) 117, 2737
FriOI GRGCYC 3 cut(s) 2714, 4994, 5545
GsaI CCCAGC 5 cut(s) 89, 1467, 5269, 5541, 5769
GsuI CTGGAG 5 cut(s) 324, 795, 3890, 4682, 5802
HaeIII GGCC 9 cut(s) 47, 90, 1939, 2057, 2075, 3301, 4983, 5119, 5678
HapII CCGG 5 cut(s) 387, 410, 1188, 3302, 5382
HgaI GACGC 1 cut(s) 5740
Hin1I GRCGYC 2 cut(s) 805, 5732
HincII GTYRAC 2 cut(s) 118, 680
HindII GTYRAC 2 cut(s) 118, 680
HindIII AAGCTT 4 cut(s) 2233, 2999, 4487, 4730
HpaII CCGG 5 cut(s) 387, 410, 1188, 3302, 5382
Hpy99I CGWCG 3 cut(s) 131, 146, 182
Hsp92I GRCGYC 2 cut(s) 805, 5732
KpnI GGTACC 2 cut(s) 1217, 1677
Ksp22I TGATCA 3 cut(s) 3106, 3123, 5002
LguI GCTCTTC 3 cut(s) 2110, 4999, 5859
LmnI GCTCC 9 cut(s) 322, 707, 2607, 2687, 3320, 3865, 4786, 5756, 5821
MfeI CAATTG 4 cut(s) 3270, 3879, 4533, 5478
MhlI GDGCHC 5 cut(s) 2714, 4994, 5418, 5545, 5854
MlyI GAGTC 6 cut(s) 1148, 3977, 4085, 4109, 4923, 5906
MmeI TCCRAC 2 cut(s) 3871, 3998
Mph1103I ATGCAT 2 cut(s) 3178, 4060
MroXI GAANNNNTTC 4 cut(s) 723, 1824, 2119, 5497
MslI CAYNNNNRTG 6 cut(s) 450, 565, 1512, 2525, 3581, 3791
MspA1I CMGCKG 5 cut(s) 350, 1382, 4621, 5537, 5807
MspCI CTTAAG 2 cut(s) 2669, 4550
MspI CCGG 5 cut(s) 387, 410, 1188, 3302, 5382
MunI CAATTG 4 cut(s) 3270, 3879, 4533, 5478
Mva1269I GAATGC 7 cut(s) 1298, 1574, 4372, 4581, 4919, 5454, 5583
MvnI CGCG 2 cut(s) 14, 40
NciI CCSGG 4 cut(s) 387, 388, 1188, 1189
NcoI CCATGG 5 cut(s) 1243, 2089, 2311, 5210, 5930
NdeI CATATG 2 cut(s) 1029, 1611
NheI GCTAGC 1 cut(s) 313
NlaIV GGNNCC 9 cut(s) 148, 1215, 1675, 3043, 3222, 3478, 4414, 5380, 5920
NmeAIII GCCGAG 4 cut(s) 81, 1585, 1598, 2083
NruI TCGCGA 1 cut(s) 14
NsiI ATGCAT 2 cut(s) 3178, 4060
NspI RCATGY 7 cut(s) 1359, 1415, 1778, 2732, 3132, 3507, 3804
NspV TTCGAA 2 cut(s) 589, 3020
PaeI GCATGC 1 cut(s) 1778
PagI TCATGA 3 cut(s) 831, 2635, 5545
PaqCI CACCTGC 1 cut(s) 1585
PceI AGGCCT 2 cut(s) 2075, 5678
PciI ACATGT 4 cut(s) 1355, 2728, 3128, 3503
PciSI GCTCTTC 3 cut(s) 2110, 4999, 5859
PcsI WCGNNNNNNNCGW 4 cut(s) 26, 108, 123, 174
PctI GAATGC 7 cut(s) 1298, 1574, 4372, 4581, 4919, 5454, 5583
PdmI GAANNNNTTC 4 cut(s) 723, 1824, 2119, 5497
PflMI CCANNNNNTGG 4 cut(s) 972, 1121, 1249, 4712
PleI GAGTC 6 cut(s) 1147, 3976, 4085, 4108, 4922, 5905
PmaCI CACGTG 1 cut(s) 1196
PmlI CACGTG 1 cut(s) 1196
PpsI GAGTC 6 cut(s) 1147, 3976, 4085, 4108, 4922, 5905
Ppu21I YACGTR 3 cut(s) 502, 1196, 4154
PpuMI RGGWCCY 2 cut(s) 4129, 5918
PscI ACATGT 4 cut(s) 1355, 2728, 3128, 3503
PshAI GACNNNNGTC 2 cut(s) 2313, 5142
Psp124BI GAGCTC 2 cut(s) 2714, 4994
Psp1406I AACGTT 1 cut(s) 1710
Psp5II RGGWCCY 2 cut(s) 4129, 5918
PspCI CACGTG 1 cut(s) 1196
PspEI GGTNACC 1 cut(s) 359
PspFI CCCAGC 5 cut(s) 85, 1463, 5265, 5537, 5765
PspN4I GGNNCC 9 cut(s) 148, 1215, 1675, 3043, 3222, 3478, 4414, 5380, 5920
PspPPI RGGWCCY 2 cut(s) 4129, 5918
PsrI GAACNNNNNNTAC 2 cut(s) 1891, 1923
PstI CTGCAG 1 cut(s) 5806
PstNI CAGNNNCTG 2 cut(s) 5801, 5825
PvuII CAGCTG 4 cut(s) 350, 1382, 5537, 5807
RruI TCGCGA 1 cut(s) 14
RseI CAYNNNNRTG 6 cut(s) 450, 565, 1512, 2525, 3581, 3791
SacI GAGCTC 2 cut(s) 2714, 4994
SalI GTCGAC 1 cut(s) 116
SapI GCTCTTC 3 cut(s) 2110, 4999, 5859
ScaI AGTACT 1 cut(s) 714
SchI GAGTC 6 cut(s) 1148, 3977, 4085, 4109, 4923, 5906
SduI GDGCHC 5 cut(s) 2714, 4994, 5418, 5545, 5854
SfcI CTRYAG 9 cut(s) 345, 939, 3225, 4244, 5140, 5228, 5419, 5802, 5811
SfuI TTCGAA 2 cut(s) 589, 3020
SinI GGWCC 7 cut(s) 1279, 2315, 2555, 3477, 4129, 5557, 5918
SmaI CCCGGG 2 cut(s) 388, 1189
SmiMI CAYNNNNRTG 6 cut(s) 450, 565, 1512, 2525, 3581, 3791
SmlI CTYRAG 4 cut(s) 302, 1657, 2669, 4550
SmoI CTYRAG 4 cut(s) 302, 1657, 2669, 4550
SphI GCATGC 1 cut(s) 1778
SseBI AGGCCT 2 cut(s) 2075, 5678
SsiI CCGC 7 cut(s) 23, 40, 55, 1143, 4621, 4868, 5178
SspI AATATT 6 cut(s) 2002, 2907, 3025, 5203, 5337, 5570
SstI GAGCTC 2 cut(s) 2714, 4994
StuI AGGCCT 2 cut(s) 2075, 5678
TatI WGTACW 8 cut(s) 323, 712, 1898, 3208, 4505, 4543, 5524, 5842
TscAI CASTG 7 cut(s) 1375, 1959, 3670, 4209, 4955, 5635, 5698
TspGWI ACGGA 3 cut(s) 567, 2203, 3614
TspMI CCCGGG 2 cut(s) 386, 1187
TspRI CASTG 7 cut(s) 1375, 1959, 3670, 4209, 4955, 5635, 5698
Van91I CCANNNNNTGG 4 cut(s) 972, 1121, 1249, 4712
Vha464I CTTAAG 2 cut(s) 2669, 4550
VpaK11BI GGWCC 7 cut(s) 1279, 2315, 2555, 3477, 4129, 5557, 5918
XagI CCTNNNNNAGG 1 cut(s) 4136
XapI RAATTY 8 cut(s) 334, 2267, 2618, 3908, 4425, 4685, 5461, 5667
XbaI TCTAGA 2 cut(s) 898, 4604
XceI RCATGY 7 cut(s) 1359, 1415, 1778, 2732, 3132, 3507, 3804
XcmI CCANNNNNNNNNTGG 2 cut(s) 469, 5362
XmaI CCCGGG 2 cut(s) 386, 1187
XmiI GTMKAC 2 cut(s) 117, 2737
XmnI GAANNNNTTC 4 cut(s) 723, 1824, 2119, 5497
ZraI GACGTC 1 cut(s) 806
ZrmI AGTACT 1 cut(s) 714
Zsp2I ATGCAT 2 cut(s) 3178, 4060
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.