Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005104

Physical Location & Seq

Genomic Coordinates Forward (+)

16700708 .. 16701166

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1102500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCAGATTTAGAGGCGAGACAGAGGAAAAACAGAAGGCAGTCTTTTGGTAAACTTAATATGGCAAAGATAGCGGACATGATGCTCGAGAGACTTCAATGTTTGCAAGAAGATGAACTCTCTTCTCTTGCCACTATAATTGCTACTTGTAGTTTAAATGCTGCCTTAGCAGAAGGCAAGCTGCATGATTCAGGCTCTACCGCTGAGACACTTCCACAAAGAATAGCAGGGGCGAAGTCTGAGATTCGAAAGAAGCAACCTGCATCAGAACTCCCAAGTCTAGACAAGTTTTTGGTTAAGCACATGACTAAACTTGAAAGCGAAGTGCAAGAAGCCAAGGATAAAAGGAACAAGTCAAGGGAAGGAGCTGCAGAAAATTCTGACAGAACTGTTGATGAGAAGGTCAGTTCAGAAACCATTCCGGGCTTGGGAAGCATCCTTCTGAAGCGTGGTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

16.72

Weight (kDa)

8.9

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49870 AT1G49870
fragaria_vesca	FvH4_2g03900 FvH4_2g03900 FvH4_2g03900 FvH4_2g03900 FvH4_2g03900
malus_domestica	MD05G1096200.v1.1 MD10G1102500.v1.1
prunus_persica	Prupe.8G140600_v2.0.a1
pyrus_communis	pycom05g09500 pycom10g08830
rosa_chinensis	RchiOBHm_Chr6g0252931 RchiOBHm_Chr6g0252961
rosa_laevigata	RLG00000015047
rosa_multiflora	Rmu_co8415545.1_g000001 Rmu_sc0002560.1_g000002 Rmu_sc0016103.1_g000002 Rmu_sc0016103.1_g000006 Rmu_sc0021616.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212270
rosa_rugosa	Rorug05G0541600 Rorug05G0542200
rosa_samantha	Rh6AG055900 Rh6AG056200 Rh6BG050200 Rh6CG048600 Rh6DG044200
rosa_wichuraiana	Rw6G005070 Rw6G005130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	268
AciI	CCGC	2 cut(s)	74, 201
AcsI	RAATTY	1 cut(s)	376
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	2 cut(s)	98, 317
AluBI	AGCT	2 cut(s)	181, 368
AluI	AGCT	2 cut(s)	181, 368
Alw26I	GTCTC	3 cut(s)	13, 85, 200
Ama87I	CYCGRG	1 cut(s)	86
ApeKI	GCWGC	3 cut(s)	161, 181, 368
ApoI	RAATTY	1 cut(s)	376
Asp700I	GAANNNNTTC	1 cut(s)	417
AsuC2I	CCSGG	1 cut(s)	423
AsuII	TTCGAA	1 cut(s)	247
AvaI	CYCGRG	1 cut(s)	86
BbvI	GCAGC	3 cut(s)	148, 168, 355
BcnI	CCSGG	1 cut(s)	423
BcoDI	GTCTC	3 cut(s)	13, 85, 200
BfaI	CTAG	1 cut(s)	281
BfmI	CTRYAG	1 cut(s)	369
BfuAI	ACCTGC	1 cut(s)	268
BisI	GCNGC	3 cut(s)	162, 182, 369
BlsI	GCNGC	3 cut(s)	163, 183, 370
Bme1390I	CCNGG	1 cut(s)	423
BmeT110I	CYCGRG	1 cut(s)	86
BmrFI	CCNGG	1 cut(s)	423
BmsI	GCATC	3 cut(s)	72, 272, 444
Bpu10I	CCTNAGC	1 cut(s)	166
Bpu14I	TTCGAA	1 cut(s)	247
BpuMI	CCSGG	1 cut(s)	423
BsaJI	CCNNGG	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	1 cut(s)	435
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMII	CTCAG	2 cut(s)	195, 231
BseXI	GCAGC	3 cut(s)	148, 168, 355
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	422
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	3 cut(s)	13, 85, 200
BsoBI	CYCGRG	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	247
BspACI	CCGC	2 cut(s)	74, 201
BspCNI	CTCAG	2 cut(s)	196, 232
BspMAI	CTGCAG	1 cut(s)	373
BspMI	ACCTGC	1 cut(s)	268
BspT104I	TTCGAA	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	336
Bst4CI	ACNGT	1 cut(s)	391
Bst6I	CTCTTC	1 cut(s)	127
BstBI	TTCGAA	1 cut(s)	247
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	3 cut(s)	166, 204, 240
BstF5I	GGATG	1 cut(s)	435
BstMAI	GTCTC	3 cut(s)	13, 85, 200
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 167, 432
BstSCI	CCNGG	1 cut(s)	421
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	3 cut(s)	148, 168, 355
BtsCI	GGATG	1 cut(s)	435
BveI	ACCTGC	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	179
CspCI	CAANNNNNGTGG	2 cut(s)	121, 156
CviAII	CATG	3 cut(s)	79, 185, 304
CviJI	RGCY	5 cut(s)	181, 195, 335, 368, 426
CviKI_1	RGCY	5 cut(s)	181, 195, 335, 368, 426
DdeI	CTNAG	3 cut(s)	166, 204, 240
DraI	TTTAAA	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	3 cut(s)	82, 188, 307
FaiI	YATR	6 cut(s)	62, 80, 137, 186, 305, 457
FalI	AAGNNNNNCTT	2 cut(s)	28, 60
FatI	CATG	3 cut(s)	78, 184, 303
Fnu4HI	GCNGC	3 cut(s)	162, 182, 369
FokI	GGATG	1 cut(s)	422
Fsp4HI	GCNGC	3 cut(s)	162, 182, 369
FspBI	CTAG	1 cut(s)	281
GluI	GCNGC	3 cut(s)	162, 182, 369
HapII	CCGG	1 cut(s)	422
Hin1II	CATG	3 cut(s)	82, 188, 307
HinfI	GANTC	2 cut(s)	188, 244
HpaII	CCGG	1 cut(s)	422
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188I	TCNGA	5 cut(s)	241, 268, 382, 412, 444
Hpy188III	TCNNGA	2 cut(s)	88, 281
Hpy8I	GTNNAC	1 cut(s)	53
HpyAV	CCTTC	5 cut(s)	30, 167, 356, 394, 449
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4V	TGCA	5 cut(s)	106, 184, 263, 328, 371
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 167, 432
HpyF3I	CTNAG	3 cut(s)	166, 204, 240
Hsp92II	CATG	3 cut(s)	82, 188, 307
LmnI	GCTCC	1 cut(s)	365
LpnPI	CCDG	4 cut(s)	177, 213, 273, 435
Lsp1109I	GCAGC	3 cut(s)	148, 168, 355
LweI	GCATC	3 cut(s)	72, 272, 444
MaeI	CTAG	1 cut(s)	281
MboII	GAAGA	2 cut(s)	114, 122
MluCI	AATT	2 cut(s)	138, 376
MnlI	CCTC	2 cut(s)	7, 18
MroXI	GAANNNNTTC	1 cut(s)	417
MseI	TTAA	3 cut(s)	57, 155, 297
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	1 cut(s)	422
MspR9I	CCNGG	1 cut(s)	423
MwoI	GCNNNNNNNGC	3 cut(s)	71, 167, 432
NciI	CCSGG	1 cut(s)	423
NlaIII	CATG	3 cut(s)	82, 188, 307
NspV	TTCGAA	1 cut(s)	247
PaeR7I	CTCGAG	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	417
PfeI	GAWTC	2 cut(s)	188, 244
PkrI	GCNGC	3 cut(s)	163, 183, 370
PstI	CTGCAG	1 cut(s)	373
SaqAI	TTAA	3 cut(s)	57, 155, 297
SatI	GCNGC	3 cut(s)	162, 182, 369
ScrFI	CCNGG	1 cut(s)	423
SetI	ASST	4 cut(s)	183, 262, 370, 405
SfaNI	GCATC	3 cut(s)	72, 272, 444
SfcI	CTRYAG	1 cut(s)	369
Sfr274I	CTCGAG	1 cut(s)	86
SfuI	TTCGAA	1 cut(s)	247
SlaI	CTCGAG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	2 cut(s)	138, 376
SsiI	CCGC	2 cut(s)	74, 201
SspMI	CTAG	1 cut(s)	281
StyD4I	CCNGG	1 cut(s)	421
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	1 cut(s)	391
TaqI	TCGA	2 cut(s)	87, 247
TasI	AATT	2 cut(s)	138, 376
TfiI	GAWTC	2 cut(s)	188, 244
Tru1I	TTAA	3 cut(s)	57, 155, 297
Tru9I	TTAA	3 cut(s)	57, 155, 297
TseI	GCWGC	3 cut(s)	161, 181, 368
TspDTI	ATGAA	2 cut(s)	129, 444
XapI	RAATTY	1 cut(s)	376
XbaI	TCTAGA	1 cut(s)	280
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XhoI	CTCGAG	1 cut(s)	86
XmnI	GAANNNNTTC	1 cut(s)	417
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.