Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021616.1

Orthogroup ID

OG0005104

Physical Location & Seq

Genomic Coordinates Reverse (-)

147 .. 1212

Gene Structure 1066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021616.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atgctgattaaacattcttcaaaacttgaaaaggaagttgaagaggccaagaagaactttgcgagaacatctgctattggtcataaaaaagtgggaggggttagtcagggaggagaaaatgtcccagaactccccagccttgataaggtcctggtgaaacgtgtctcaagacttgagaaggaggtccaagaagcaaagaacagaaggcaaaacaatactcaaggagtcaggttgtcacatcttaaaaacaaggaagttgatttatctgctacagaatcaaaggagaatgtcaattcccgttctagtgaaggaccagaggagaaagaaaatattgacttgaataaggatgctgcagaaaacatggagaaaaatgctagtggagtggaaacaaataagaaggctggaaccgaaggggctgaagatagtttggacaagatcatgcttaaaccagtgcacaggttagaaagagagaaaatgcaagccttggcaaagggaaacaattatgaatatcgtacacttgaaaagaaaaagggaggaaatagcgttacagaatgtgagagcttggacaaagttttggtaaaacatgtatccaggctggagaaagaaaagatgaagatgaagcttggtgcagaggaacctgttgaagtgaagataagtaaggcaaagctgcattcgcttgtggatgaagcaggtggtttggaccaaattttggttaaacataaatcaagacttgagaaagaaaaggtggctgctgctcagcaaccagaggaccggactagattctctgtgactcgaaaacaagcaagggagagagaactacaagaacaatggggaggtctaggcttaggaaactccatgaagccacatcaatcgaaacttgaacaggataaggctgcttggattaaggctgaacaagaggaaaagaggcaagctgtgggattctcaggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

316

Amino Acids

35.44

Weight (kDa)

9.27

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49870 AT1G49870
fragaria_vesca	FvH4_2g03900 FvH4_2g03900 FvH4_2g03900 FvH4_2g03900 FvH4_2g03900
malus_domestica	MD05G1096200.v1.1 MD10G1102500.v1.1
prunus_persica	Prupe.8G140600_v2.0.a1
pyrus_communis	pycom05g09500 pycom10g08830
rosa_chinensis	RchiOBHm_Chr6g0252931 RchiOBHm_Chr6g0252961
rosa_laevigata	RLG00000015047
rosa_multiflora	Rmu_co8415545.1_g000001 Rmu_sc0002560.1_g000002 Rmu_sc0016103.1_g000002 Rmu_sc0016103.1_g000006 Rmu_sc0021616.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212270
rosa_rugosa	Rorug05G0541600 Rorug05G0542200
rosa_samantha	Rh6AG055900 Rh6AG056200 Rh6BG050200 Rh6CG048600 Rh6DG044200
rosa_wichuraiana	Rw6G005070 Rw6G005130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	680
Acc36I	ACCTGC	1 cut(s)	680
AccB7I	CCANNNNNTGG	1 cut(s)	709
AcsI	RAATTY	1 cut(s)	705
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	1 cut(s)	514
AfiI	CCNNNNNNNGG	2 cut(s)	145, 709
AflIII	ACRYGT	2 cut(s)	160, 583
AgsI	TTSAA	7 cut(s)	21, 29, 41, 340, 521, 644, 881
AjnI	CCWGG	2 cut(s)	150, 590
AluBI	AGCT	4 cut(s)	561, 622, 667, 932
AluI	AGCT	4 cut(s)	561, 622, 667, 932
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	1 cut(s)	169
Alw44I	GTGCAC	1 cut(s)	452
AoxI	GGCC	1 cut(s)	45
ApaLI	GTGCAC	1 cut(s)	452
ApeKI	GCWGC	5 cut(s)	350, 667, 749, 752, 893
ApoI	RAATTY	1 cut(s)	705
AspS9I	GGNCC	5 cut(s)	148, 184, 311, 700, 769
AsuHPI	GGTGA	1 cut(s)	166
AvaII	GGWCC	5 cut(s)	148, 184, 311, 700, 769
BaeGI	GKGCMC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	5 cut(s)	337, 654, 736, 739, 880
BciT130I	CCWGG	2 cut(s)	152, 592
BciVI	GTATCC	1 cut(s)	598
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	4 cut(s)	303, 375, 777, 839
BfmI	CTRYAG	2 cut(s)	270, 351
BfuAI	ACCTGC	1 cut(s)	680
BfuI	GTATCC	1 cut(s)	598
BisI	GCNGC	5 cut(s)	351, 668, 750, 753, 894
BlpI	GCTNAGC	1 cut(s)	756
BlsI	GCNGC	5 cut(s)	352, 669, 751, 754, 895
Bme1390I	CCNGG	2 cut(s)	152, 592
Bme18I	GGWCC	5 cut(s)	148, 184, 311, 700, 769
BmgT120I	GGNCC	5 cut(s)	148, 184, 311, 700, 769
BmiI	GGNNCC	2 cut(s)	406, 636
BmrFI	CCNGG	2 cut(s)	152, 592
BmsI	GCATC	1 cut(s)	337
BpmI	CTGGAG	1 cut(s)	617
Bpu10I	CCTNAGC	1 cut(s)	844
Bpu1102I	GCTNAGC	1 cut(s)	756
BpuEI	CTTGAG	4 cut(s)	151, 194, 204, 752
BsaJI	CCNNGG	1 cut(s)	483
BsaWI	WCCGGW	1 cut(s)	771
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 709
Bse1I	ACTGG	1 cut(s)	449
BseBI	CCWGG	2 cut(s)	152, 592
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	2 cut(s)	352, 688
BseLI	CCNNNNNNNGG	2 cut(s)	145, 709
BseMII	CTCAG	1 cut(s)	770
BseNI	ACTGG	1 cut(s)	449
BseRI	GAGGAG	2 cut(s)	126, 332
BseSI	GKGCMC	1 cut(s)	456
BseXI	GCAGC	5 cut(s)	337, 654, 736, 739, 880
BseYI	CCCAGC	1 cut(s)	134
BsgI	GTGCAG	1 cut(s)	648
BshFI	GGCC	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	456
BsiSI	CCGG	1 cut(s)	772
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	2 cut(s)	145, 709
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	107
BsmI	GAATGC	1 cut(s)	670
BsnI	GGCC	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	1 cut(s)	435
Bsp1720I	GCTNAGC	1 cut(s)	756
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	769
BspLI	GGNNCC	2 cut(s)	406, 636
BspMAI	CTGCAG	1 cut(s)	355
BspMI	ACCTGC	1 cut(s)	680
BsrI	ACTGG	1 cut(s)	449
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	1 cut(s)	435
BssT1I	CCWWGG	1 cut(s)	483
Bst2UI	CCWGG	2 cut(s)	152, 592
Bst6I	CTCTTC	1 cut(s)	36
BstC8I	GCNNGC	2 cut(s)	480, 930
BstDEI	CTNAG	3 cut(s)	756, 844, 943
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	352, 688
BstKTI	GATC	1 cut(s)	438
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	435
BstMWI	GCNNNNNNNGC	1 cut(s)	673
BstNI	CCWGG	2 cut(s)	152, 592
BstNSI	RCATGY	1 cut(s)	587
BstSCI	CCNGG	2 cut(s)	150, 590
BstSFI	CTRYAG	2 cut(s)	270, 351
BstSLI	GKGCMC	1 cut(s)	456
BstV1I	GCAGC	5 cut(s)	337, 654, 736, 739, 880
BsuI	GTATCC	1 cut(s)	598
BsuRI	GGCC	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	352, 688
BtsIMutI	CAGTG	1 cut(s)	456
BveI	ACCTGC	1 cut(s)	680
Cac8I	GCNNGC	2 cut(s)	480, 930
Cfr13I	GGNCC	5 cut(s)	148, 184, 311, 700, 769
Csp6I	GTAC	1 cut(s)	513
CviAII	CATG	4 cut(s)	361, 439, 584, 856
CviQI	GTAC	1 cut(s)	513
DdeI	CTNAG	3 cut(s)	756, 844, 943
DpnI	GATC	1 cut(s)	437
DpnII	GATC	1 cut(s)	435
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	483
Eco47I	GGWCC	5 cut(s)	148, 184, 311, 700, 769
Eco57I	CTGAAG	1 cut(s)	438
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	148
EcoRII	CCWGG	2 cut(s)	150, 590
EcoT14I	CCWWGG	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	4 cut(s)	364, 442, 587, 859
FaiI	YATR	7 cut(s)	84, 362, 440, 504, 585, 720, 857
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	4 cut(s)	360, 438, 583, 855
Fnu4HI	GCNGC	5 cut(s)	351, 668, 750, 753, 894
FokI	GGATG	2 cut(s)	359, 695
Fsp4HI	GCNGC	5 cut(s)	351, 668, 750, 753, 894
FspBI	CTAG	4 cut(s)	303, 375, 777, 839
GluI	GCNGC	5 cut(s)	351, 668, 750, 753, 894
GsaI	CCCAGC	1 cut(s)	138
GsuI	CTGGAG	1 cut(s)	617
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	1 cut(s)	772
Hin1II	CATG	4 cut(s)	364, 442, 587, 859
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	5 cut(s)	225, 275, 780, 790, 939
HpaII	CCGG	1 cut(s)	772
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	2 cut(s)	454, 515
Hpy188III	TCNNGA	2 cut(s)	168, 726
Hpy8I	GTNNAC	2 cut(s)	454, 515
HpyAV	CCTTC	5 cut(s)	172, 198, 302, 391, 404
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	5 cut(s)	353, 454, 478, 629, 670
HpyF10VI	GCNNNNNNNGC	1 cut(s)	673
HpyF3I	CTNAG	3 cut(s)	756, 844, 943
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	4 cut(s)	364, 442, 587, 859
Kzo9I	GATC	1 cut(s)	435
Lsp1109I	GCAGC	5 cut(s)	337, 654, 736, 739, 880
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	4 cut(s)	303, 375, 777, 839
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	3 cut(s)	234, 544, 787
MalI	GATC	1 cut(s)	437
MboI	GATC	1 cut(s)	435
MboII	GAAGA	6 cut(s)	9, 53, 64, 431, 625, 661
MhlI	GDGCHC	1 cut(s)	456
MluCI	AATT	3 cut(s)	292, 499, 705
MlyI	GAGTC	2 cut(s)	234, 784
MseI	TTAA	6 cut(s)	9, 243, 444, 714, 903, 949
MspI	CCGG	1 cut(s)	772
MspR9I	CCNGG	2 cut(s)	152, 592
Mva1269I	GAATGC	1 cut(s)	670
MvaI	CCWGG	2 cut(s)	152, 592
MwoI	GCNNNNNNNGC	1 cut(s)	673
NdeII	GATC	1 cut(s)	435
NlaIII	CATG	4 cut(s)	364, 442, 587, 859
NlaIV	GGNNCC	2 cut(s)	406, 636
NmuCI	GTSAC	2 cut(s)	234, 787
NspI	RCATGY	1 cut(s)	587
PaqCI	CACCTGC	1 cut(s)	680
PciI	ACATGT	1 cut(s)	583
PctI	GAATGC	1 cut(s)	670
PfeI	GAWTC	3 cut(s)	275, 780, 939
PflMI	CCANNNNNTGG	1 cut(s)	709
PkrI	GCNGC	5 cut(s)	352, 669, 751, 754, 895
PleI	GAGTC	2 cut(s)	233, 784
PpsI	GAGTC	2 cut(s)	233, 784
PpuMI	RGGWCCY	1 cut(s)	148
PscI	ACATGT	1 cut(s)	583
Psp5II	RGGWCCY	1 cut(s)	148
Psp6I	CCWGG	2 cut(s)	150, 590
PspFI	CCCAGC	1 cut(s)	134
PspGI	CCWGG	2 cut(s)	150, 590
PspN4I	GGNNCC	2 cut(s)	406, 636
PspPI	GGNCC	5 cut(s)	148, 184, 311, 700, 769
PspPPI	RGGWCCY	1 cut(s)	148
PstI	CTGCAG	1 cut(s)	355
RsaI	GTAC	1 cut(s)	514
RsaNI	GTAC	1 cut(s)	513
SaqAI	TTAA	6 cut(s)	9, 243, 444, 714, 903, 949
SatI	GCNGC	5 cut(s)	351, 668, 750, 753, 894
Sau3AI	GATC	1 cut(s)	435
Sau96I	GGNCC	5 cut(s)	148, 184, 311, 700, 769
SchI	GAGTC	2 cut(s)	234, 784
ScrFI	CCNGG	2 cut(s)	152, 592
SduI	GDGCHC	1 cut(s)	456
SfaNI	GCATC	1 cut(s)	337
SfcI	CTRYAG	2 cut(s)	270, 351
SinI	GGWCC	5 cut(s)	148, 184, 311, 700, 769
SmlI	CTYRAG	4 cut(s)	166, 173, 219, 731
SmoI	CTYRAG	4 cut(s)	166, 173, 219, 731
Sse9I	AATT	3 cut(s)	292, 499, 705
SspI	AATATT	1 cut(s)	331
SspMI	CTAG	4 cut(s)	303, 375, 777, 839
StyD4I	CCNGG	2 cut(s)	150, 590
StyI	CCWWGG	1 cut(s)	483
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	2 cut(s)	793, 872
TasI	AATT	3 cut(s)	292, 499, 705
TfiI	GAWTC	3 cut(s)	275, 780, 939
Tru1I	TTAA	6 cut(s)	9, 243, 444, 714, 903, 949
Tru9I	TTAA	6 cut(s)	9, 243, 444, 714, 903, 949
TscAI	CASTG	1 cut(s)	456
TseFI	GTSAC	2 cut(s)	234, 787
TseI	GCWGC	5 cut(s)	350, 667, 749, 752, 893
Tsp45I	GTSAC	2 cut(s)	234, 787
TspDTI	ATGAA	5 cut(s)	519, 626, 632, 699, 872
TspRI	CASTG	1 cut(s)	456
Van91I	CCANNNNNTGG	1 cut(s)	709
VneI	GTGCAC	1 cut(s)	452
VpaK11BI	GGWCC	5 cut(s)	148, 184, 311, 700, 769
XagI	CCTNNNNNAGG	1 cut(s)	143
XapI	RAATTY	1 cut(s)	705
XceI	RCATGY	1 cut(s)	587
XspI	CTAG	4 cut(s)	303, 375, 777, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.