Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005104

Physical Location & Seq

Genomic Coordinates Forward (+)

4820558 .. 4824167

Gene Structure 3610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG048600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGGACCTCGGCTGCTTGGACTTGGGTTGCATAGAGGTCTCAGACAAGCAAGGCGCTACTCCTGACTCTCACGGCAAACAAAACGAGCCGATCACGGCGAGCTCCAAGTTCGGAAAGAACAAAAGTTTGAAAGAGACGGCTGTATCAACATTGAATTCTCTTAACAAATTCACATCACAAATTAAGAAGCCTTCTCAACGTAGAACTTCTCCTCTCAATTGGTTCCCGCGAAAGAAAGGAGACTCCTACTTGATGAGGAAAATCAAAATGCTACAGGAAGCAGATGGCATGAGTTTAACTCTTGATGAGACTCTAGGTGATTCTAATCCGCATTACTCAAAGGTCCTGAGGGAAAAAATGGCAGCAAGAGAAGCTGCACAAAAGGCGATGCAGGCACGAAAAGCTGCATTGGTGGAAGCATCATGGTGTCGAATACTTCTGGCAGCCAGGATTCAAAGCAAAGAAGCAGAAGCTGAACTGTTGAAAGCGGACAAAGCTGCAGCCGAAGCTTTTGAGGTGGCATCATCCATGGGAGTTATAATGTATGACATACCAAACTGCACTCGCAAGCCTTTTGTAGAAACATCCACTATAGATGGAGGAAAGTCTACTACCCACACAGTCACAGCATCTTTTGAGACTGCATTTGAGGTGGACAAAGAAGTAGCTGCTGCTGTGAAGGTTGCTTTAGTTAGGCTTGGAAACAGCCCTTCTTTTAGTAAAGATGAGTTCAAAGAACTGCTTCGAAAAATTAGTGAGAACCCCGATACAGGTGAAAATTATCAGGAATTATCCGAGTTCAGTTCAGAATGTGAATCAGAACCTGGATCAGAACTTGAAGCAGTGGCCGAGAAAGATAATGTCAGTTCCCAAGATTTGGATCATAAGATGCAAAGTTTGGAGGTAAGACAAAAGAAAAATAGAAGGCAGTCTTTTGGAAAGCTTAATATGGAAAATATAGTGGACATGATTCTTGAGAGGCTTCAATGCTTGAAAGAAGAGGAACTCTCTTCTCTTGCCACTATAGTTGCTACTTGTGGTTTAAATGCTGCCCTGGCAGAGAATAGCAAGCTGCTTGGTCCAGGATCTGCTGCTGAGACATTTCCGCGAAGGATGCTGGAGAAAGAGAAGATGAAGATGAAGCTTGGTGCAGAAGAACCTTTTGAAGTGAAGAGATGTAAGGCAAAGCTGCATTCACCTGTGGATGAAGCAGGTGGTTTGGACCAAATTTTGGTTAAACATAAATCAAGACTTGAGAAAGAAAAGGTGGCTGCTGCTCAGCAACCAGAGGACCGGACTAGATTCTCTGTGACTCGAAAACAAGCAAGGGAGAGAGAACTACAAGAACAATGGGGAGGTCTAGGCTTAGGAAACTCCATGAAGCCACATCAATCGAAACTTGAACTGGATAAGGCTGCTTGGATTAAAGCTGAACAAGAGGAAAAGAGGCAAGCTGTGGGATTCTCGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

490

Amino Acids

54.36

Weight (kDa)

7.97

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49870 AT1G49870
fragaria_vesca	FvH4_2g03900 FvH4_2g03900 FvH4_2g03900 FvH4_2g03900 FvH4_2g03900
malus_domestica	MD05G1096200.v1.1 MD10G1102500.v1.1
prunus_persica	Prupe.8G140600_v2.0.a1
pyrus_communis	pycom05g09500 pycom10g08830
rosa_chinensis	RchiOBHm_Chr6g0252931 RchiOBHm_Chr6g0252961
rosa_laevigata	RLG00000015047
rosa_multiflora	Rmu_co8415545.1_g000001 Rmu_sc0002560.1_g000002 Rmu_sc0016103.1_g000002 Rmu_sc0016103.1_g000006 Rmu_sc0021616.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212270
rosa_rugosa	Rorug05G0541600 Rorug05G0542200
rosa_samantha	Rh6AG055900 Rh6AG056200 Rh6BG050200 Rh6CG048600 Rh6DG044200
rosa_wichuraiana	Rw6G005070 Rw6G005130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	539
AarI	CACCTGC	1 cut(s)	1202
Acc36I	ACCTGC	1 cut(s)	1202
AccB7I	CCANNNNNTGG	2 cut(s)	877, 1231
AccI	GTMKAC	1 cut(s)	608
AccII	CGCG	2 cut(s)	229, 1108
AciI	CCGC	4 cut(s)	227, 329, 488, 1106
AclWI	GGATC	3 cut(s)	835, 888, 1093
AcoI	YGGCCR	1 cut(s)	846
AcsI	RAATTY	3 cut(s)	154, 167, 1227
AfiI	CCNNNNNNNGG	3 cut(s)	770, 877, 1231
AjnI	CCWGG	4 cut(s)	446, 823, 1053, 1081
Alw21I	GWGCWC	1 cut(s)	104
Alw26I	GTCTC	6 cut(s)	43, 128, 234, 302, 632, 1091
AlwI	GGATC	3 cut(s)	835, 888, 1093
AlwNI	CAGNNNCTG	3 cut(s)	473, 824, 1088
Ama87I	CYCGRG	1 cut(s)	1465
AoxI	GGCC	1 cut(s)	846
ApoI	RAATTY	3 cut(s)	154, 167, 1227
Asp700I	GAANNNNTTC	1 cut(s)	741
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	5 cut(s)	4, 343, 1079, 1222, 1291
AsuHPI	GGTGA	3 cut(s)	329, 785, 1188
AsuII	TTCGAA	1 cut(s)	745
AvaI	CYCGRG	1 cut(s)	1465
AvaII	GGWCC	5 cut(s)	4, 343, 1079, 1222, 1291
AxyI	CCTNAGG	1 cut(s)	347
BaeI	ACNNNNGTAYC	2 cut(s)	126, 159
BanII	GRGCYC	1 cut(s)	104
Bbv12I	GWGCWC	1 cut(s)	104
BccI	CCATC	2 cut(s)	278, 590
BceAI	ACGGC	3 cut(s)	88, 111, 153
BciT130I	CCWGG	4 cut(s)	448, 825, 1055, 1083
BcoDI	GTCTC	6 cut(s)	43, 128, 234, 302, 632, 1091
BfaI	CTAG	3 cut(s)	314, 1299, 1361
BfmI	CTRYAG	4 cut(s)	272, 498, 591, 1023
BfoI	RGCGCY	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	1202
BlpI	GCTNAGC	1 cut(s)	1278
Bme1390I	CCNGG	4 cut(s)	448, 825, 1055, 1083
Bme18I	GGWCC	5 cut(s)	4, 343, 1079, 1222, 1291
BmeT110I	CYCGRG	1 cut(s)	1465
BmgT120I	GGNCC	5 cut(s)	4, 343, 1079, 1222, 1291
BmiI	GGNNCC	1 cut(s)	224
BmrFI	CCNGG	4 cut(s)	448, 825, 1055, 1083
BmsI	GCATC	6 cut(s)	378, 428, 530, 638, 879, 1104
BplI	GAGNNNNNCTC	4 cut(s)	283, 315, 992, 1024
BpmI	CTGGAG	1 cut(s)	1139
Bpu10I	CCTNAGC	1 cut(s)	1366
Bpu1102I	GCTNAGC	1 cut(s)	1278
Bpu14I	TTCGAA	1 cut(s)	745
BpuEI	CTTGAG	2 cut(s)	995, 1274
BsaBI	GATNNNNATC	2 cut(s)	324, 879
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	3 cut(s)	7, 528, 1053
BsaWI	WCCGGW	1 cut(s)	1293
Bsc4I	CCNNNNNNNGG	3 cut(s)	770, 877, 1231
Bse1I	ACTGG	1 cut(s)	1410
Bse21I	CCTNAGG	1 cut(s)	347
Bse8I	GATNNNNATC	2 cut(s)	324, 879
BseBI	CCWGG	4 cut(s)	448, 825, 1055, 1083
BseDI	CCNNGG	3 cut(s)	7, 528, 1053
BseGI	GGATG	4 cut(s)	524, 584, 1119, 1210
BseJI	GATNNNNATC	2 cut(s)	324, 879
BseLI	CCNNNNNNNGG	3 cut(s)	770, 877, 1231
BseMII	CTCAG	4 cut(s)	54, 338, 1086, 1292
BseNI	ACTGG	1 cut(s)	1410
BseRI	GAGGAG	1 cut(s)	201
BsgI	GTGCAG	3 cut(s)	360, 544, 1170
Bsh1236I	CGCG	2 cut(s)	229, 1108
BshFI	GGCC	1 cut(s)	848
BsiHKAI	GWGCWC	1 cut(s)	104
BsiHKCI	CYCGRG	1 cut(s)	1465
BsiSI	CCGG	1 cut(s)	1294
BslI	CCNNNNNNNGG	3 cut(s)	770, 877, 1231
BsmAI	GTCTC	6 cut(s)	43, 128, 234, 302, 632, 1091
BsmBI	CGTCTC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	1192
BsnI	GGCC	1 cut(s)	848
Bso31I	GGTCTC	1 cut(s)	43
BsoBI	CYCGRG	1 cut(s)	1465
Bsp119I	TTCGAA	1 cut(s)	745
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	4 cut(s)	90, 827, 880, 1085
Bsp1720I	GCTNAGC	1 cut(s)	1278
Bsp19I	CCATGG	1 cut(s)	528
BspACI	CCGC	4 cut(s)	227, 329, 488, 1106
BspANI	GGCC	1 cut(s)	848
BspCNI	CTCAG	4 cut(s)	53, 339, 1087, 1291
BspFNI	CGCG	2 cut(s)	229, 1108
BspLI	GGNNCC	1 cut(s)	224
BspMAI	CTGCAG	1 cut(s)	502
BspMI	ACCTGC	1 cut(s)	1202
BspPI	GGATC	3 cut(s)	835, 888, 1093
BspT104I	TTCGAA	1 cut(s)	745
BspTNI	GGTCTC	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	1410
BssECI	CCNNGG	3 cut(s)	7, 528, 1053
BssMI	GATC	4 cut(s)	90, 827, 880, 1085
BssT1I	CCWWGG	1 cut(s)	528
Bst2UI	CCWGG	4 cut(s)	448, 825, 1055, 1083
Bst4CI	ACNGT	2 cut(s)	480, 622
Bst6I	CTCTTC	3 cut(s)	993, 1015, 1166
BstBI	TTCGAA	1 cut(s)	745
BstC8I	GCNNGC	5 cut(s)	100, 393, 569, 1070, 1452
BstDEI	CTNAG	5 cut(s)	40, 347, 1095, 1278, 1366
BstDSI	CCRYGG	1 cut(s)	528
BstF5I	GGATG	4 cut(s)	524, 584, 1119, 1210
BstFNI	CGCG	2 cut(s)	229, 1108
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	4 cut(s)	93, 830, 883, 1088
BstMAI	GTCTC	6 cut(s)	43, 128, 234, 302, 632, 1091
BstMBI	GATC	4 cut(s)	90, 827, 880, 1085
BstMWI	GCNNNNNNNGC	8 cut(s)	371, 383, 392, 401, 494, 506, 1055, 1114
BstNI	CCWGG	4 cut(s)	448, 825, 1055, 1083
BstSCI	CCNGG	4 cut(s)	446, 823, 1053, 1081
BstSFI	CTRYAG	4 cut(s)	272, 498, 591, 1023
BstUI	CGCG	2 cut(s)	229, 1108
BstX2I	RGATCY	1 cut(s)	1085
BstYI	RGATCY	1 cut(s)	1085
Bsu36I	CCTNAGG	1 cut(s)	347
BsuRI	GGCC	1 cut(s)	848
BtgI	CCRYGG	1 cut(s)	528
BtgZI	GCGATG	1 cut(s)	401
BtsCI	GGATG	4 cut(s)	524, 584, 1119, 1210
BtsI	GCAGTG	1 cut(s)	849
BtsIMutI	CAGTG	1 cut(s)	849
BveI	ACCTGC	1 cut(s)	1202
Cac8I	GCNNGC	5 cut(s)	100, 393, 569, 1070, 1452
CaiI	CAGNNNCTG	3 cut(s)	473, 824, 1088
CfoI	GCGC	1 cut(s)	56
Cfr13I	GGNCC	5 cut(s)	4, 343, 1079, 1222, 1291
CspCI	CAANNNNNGTGG	2 cut(s)	1009, 1044
CviAII	CATG	5 cut(s)	289, 423, 529, 967, 1378
DdeI	CTNAG	5 cut(s)	40, 347, 1095, 1278, 1366
DpnI	GATC	4 cut(s)	92, 829, 882, 1087
DpnII	GATC	4 cut(s)	90, 827, 880, 1085
DraI	TTTAAA	1 cut(s)	1044
EaeI	YGGCCR	1 cut(s)	846
Eam1104I	CTCTTC	3 cut(s)	993, 1015, 1166
EarI	CTCTTC	3 cut(s)	993, 1015, 1166
Ecl136II	GAGCTC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	528
Eco24I	GRGCYC	1 cut(s)	104
Eco31I	GGTCTC	1 cut(s)	43
Eco47I	GGWCC	5 cut(s)	4, 343, 1079, 1222, 1291
Eco53kI	GAGCTC	1 cut(s)	102
Eco81I	CCTNAGG	1 cut(s)	347
Eco88I	CYCGRG	1 cut(s)	1465
EcoICRI	GAGCTC	1 cut(s)	102
EcoO109I	RGGNCCY	1 cut(s)	343
EcoRI	GAATTC	1 cut(s)	154
EcoRII	CCWGG	4 cut(s)	446, 823, 1053, 1081
EcoT14I	CCWWGG	1 cut(s)	528
EcoT38I	GRGCYC	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	528
Esp3I	CGTCTC	1 cut(s)	128
FaeI	CATG	5 cut(s)	292, 426, 532, 970, 1381
FalI	AAGNNNNNCTT	4 cut(s)	726, 758, 916, 948
FatI	CATG	5 cut(s)	288, 422, 528, 966, 1377
FauI	CCCGC	1 cut(s)	234
FblI	GTMKAC	1 cut(s)	608
FokI	GGATG	4 cut(s)	511, 571, 1126, 1217
FriOI	GRGCYC	1 cut(s)	104
FspBI	CTAG	3 cut(s)	314, 1299, 1361
GlaI	GCGC	1 cut(s)	55
GsuI	CTGGAG	1 cut(s)	1139
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	848
HapII	CCGG	1 cut(s)	1294
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	5 cut(s)	292, 426, 532, 970, 1381
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HindIII	AAGCTT	3 cut(s)	507, 941, 1142
HpaII	CCGG	1 cut(s)	1294
HphI	GGTGA	3 cut(s)	329, 785, 1188
Hpy166II	GTNNAC	3 cut(s)	609, 655, 964
Hpy188I	TCNGA	6 cut(s)	43, 113, 796, 808, 820, 832
Hpy188III	TCNNGA	6 cut(s)	62, 302, 346, 785, 974, 1248
Hpy8I	GTNNAC	3 cut(s)	609, 655, 964
HpyAV	CCTTC	5 cut(s)	201, 673, 720, 918, 1104
HpyCH4III	ACNGT	2 cut(s)	480, 622
HpyCH4IV	ACGT	1 cut(s)	199
HpyF10VI	GCNNNNNNNGC	8 cut(s)	371, 383, 392, 401, 494, 506, 1055, 1114
HpyF3I	CTNAG	5 cut(s)	40, 347, 1095, 1278, 1366
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	5 cut(s)	292, 426, 532, 970, 1381
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	4 cut(s)	90, 827, 880, 1085
LmnI	GCTCC	1 cut(s)	107
LweI	GCATC	6 cut(s)	378, 428, 530, 638, 879, 1104
MaeI	CTAG	3 cut(s)	314, 1299, 1361
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	2 cut(s)	622, 1309
MalI	GATC	4 cut(s)	92, 829, 882, 1087
MboI	GATC	4 cut(s)	90, 827, 880, 1085
MboII	GAAGA	6 cut(s)	1002, 1010, 1141, 1147, 1166, 1183
MfeI	CAATTG	1 cut(s)	217
MflI	RGATCY	1 cut(s)	1085
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	8 cut(s)	154, 167, 180, 217, 750, 778, 788, 1227
MlyI	GAGTC	4 cut(s)	59, 236, 304, 1306
MroXI	GAANNNNTTC	1 cut(s)	741
MseI	TTAA	8 cut(s)	162, 183, 296, 945, 1043, 1236, 1425, 1471
MslI	CAYNNNNRTG	1 cut(s)	424
MspI	CCGG	1 cut(s)	1294
MspR9I	CCNGG	4 cut(s)	448, 825, 1055, 1083
MunI	CAATTG	1 cut(s)	217
Mva1269I	GAATGC	1 cut(s)	1192
MvaI	CCWGG	4 cut(s)	448, 825, 1055, 1083
MvnI	CGCG	2 cut(s)	229, 1108
MwoI	GCNNNNNNNGC	8 cut(s)	371, 383, 392, 401, 494, 506, 1055, 1114
NcoI	CCATGG	1 cut(s)	528
NdeII	GATC	4 cut(s)	90, 827, 880, 1085
NlaIII	CATG	5 cut(s)	292, 426, 532, 970, 1381
NlaIV	GGNNCC	1 cut(s)	224
NmeAIII	GCCGAG	1 cut(s)	874
NmuCI	GTSAC	2 cut(s)	622, 1309
NspV	TTCGAA	1 cut(s)	745
PaqCI	CACCTGC	1 cut(s)	1202
PctI	GAATGC	1 cut(s)	1192
PdmI	GAANNNNTTC	1 cut(s)	741
PfeI	GAWTC	6 cut(s)	320, 451, 815, 970, 1302, 1461
PflMI	CCANNNNNTGG	2 cut(s)	877, 1231
PfoI	TCCNGGA	1 cut(s)	1081
PleI	GAGTC	4 cut(s)	59, 236, 304, 1306
PpsI	GAGTC	4 cut(s)	59, 236, 304, 1306
PpuMI	RGGWCCY	1 cut(s)	343
PsiI	TTATAA	1 cut(s)	539
Psp124BI	GAGCTC	1 cut(s)	104
Psp5II	RGGWCCY	1 cut(s)	343
Psp6I	CCWGG	4 cut(s)	446, 823, 1053, 1081
PspGI	CCWGG	4 cut(s)	446, 823, 1053, 1081
PspN4I	GGNNCC	1 cut(s)	224
PspPI	GGNCC	5 cut(s)	4, 343, 1079, 1222, 1291
PspPPI	RGGWCCY	1 cut(s)	343
PstI	CTGCAG	1 cut(s)	502
PstNI	CAGNNNCTG	3 cut(s)	473, 824, 1088
PsuI	RGATCY	1 cut(s)	1085
RseI	CAYNNNNRTG	1 cut(s)	424
SacI	GAGCTC	1 cut(s)	104
SaqAI	TTAA	8 cut(s)	162, 183, 296, 945, 1043, 1236, 1425, 1471
Sau3AI	GATC	4 cut(s)	90, 827, 880, 1085
Sau96I	GGNCC	5 cut(s)	4, 343, 1079, 1222, 1291
SchI	GAGTC	4 cut(s)	59, 236, 304, 1306
ScrFI	CCNGG	4 cut(s)	448, 825, 1055, 1083
SduI	GDGCHC	1 cut(s)	104
SfaNI	GCATC	6 cut(s)	378, 428, 530, 638, 879, 1104
SfcI	CTRYAG	4 cut(s)	272, 498, 591, 1023
SfuI	TTCGAA	1 cut(s)	745
SinI	GGWCC	5 cut(s)	4, 343, 1079, 1222, 1291
SmiMI	CAYNNNNRTG	1 cut(s)	424
SmlI	CTYRAG	2 cut(s)	974, 1253
SmoI	CTYRAG	2 cut(s)	974, 1253
Sse9I	AATT	8 cut(s)	154, 167, 180, 217, 750, 778, 788, 1227
SsiI	CCGC	4 cut(s)	227, 329, 488, 1106
SspMI	CTAG	3 cut(s)	314, 1299, 1361
SstI	GAGCTC	1 cut(s)	104
StyD4I	CCNGG	4 cut(s)	446, 823, 1053, 1081
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	2 cut(s)	480, 622
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	4 cut(s)	430, 745, 1315, 1394
TasI	AATT	8 cut(s)	154, 167, 180, 217, 750, 778, 788, 1227
TfiI	GAWTC	6 cut(s)	320, 451, 815, 970, 1302, 1461
Tru1I	TTAA	8 cut(s)	162, 183, 296, 945, 1043, 1236, 1425, 1471
Tru9I	TTAA	8 cut(s)	162, 183, 296, 945, 1043, 1236, 1425, 1471
TscAI	CASTG	1 cut(s)	849
TseFI	GTSAC	2 cut(s)	622, 1309
Tsp45I	GTSAC	2 cut(s)	622, 1309
TspDTI	ATGAA	4 cut(s)	1148, 1154, 1221, 1394
TspRI	CASTG	1 cut(s)	849
Van91I	CCANNNNNTGG	2 cut(s)	877, 1231
VpaK11BI	GGWCC	5 cut(s)	4, 343, 1079, 1222, 1291
XapI	RAATTY	3 cut(s)	154, 167, 1227
XmiI	GTMKAC	1 cut(s)	608
XmnI	GAANNNNTTC	1 cut(s)	741
XspI	CTAG	3 cut(s)	314, 1299, 1361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.