Rh6AG056200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
8287218 .. 8287674
457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG056200.1

Sequence Viewer

Length: 342 bp
ATGAAGATGAAGCTTGGTGCAGAAGAACCTGTTGAAGTGAAGAGAAGTAAGGCAAAGCTGCATTCGCTTGTGGATGAAGCAGGTGGTTTGGACCAAATTTTGGTTAAACATAAATCAAGACTTGAGAAAGAAAAGGTGGCTGCTGCTCAGCAACCAGAGGACCGGACTAGATTCTCTGTGACTCGAAAACAAGCAAGGGAGAGAGAACTACAAGAACAATGGGGAGGTCTAGGCTTAGGAAACTCCATGAAGCCACATCAATCGAAACTTGAACTGGATAAGGCTGCTTGGATTAAAGCTGAACAAGAGGAAAAGAGGCAAGCTGTGGGATTCTCAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.76

Weight (kDa)

9.56

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 71
Acc36I ACCTGC 1 cut(s) 71
AccB7I CCANNNNNTGG 1 cut(s) 100
AcsI RAATTY 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 2 cut(s) 35, 272
AluBI AGCT 4 cut(s) 13, 58, 299, 323
AluI AGCT 4 cut(s) 13, 58, 299, 323
ApeKI GCWGC 4 cut(s) 58, 140, 143, 284
ApoI RAATTY 1 cut(s) 96
AspS9I GGNCC 2 cut(s) 91, 160
AvaII GGWCC 2 cut(s) 91, 160
BbvI GCAGC 4 cut(s) 45, 127, 130, 271
BfaI CTAG 2 cut(s) 168, 230
BfuAI ACCTGC 1 cut(s) 71
BisI GCNGC 4 cut(s) 59, 141, 144, 285
BlpI GCTNAGC 1 cut(s) 147
BlsI GCNGC 4 cut(s) 60, 142, 145, 286
Bme18I GGWCC 2 cut(s) 91, 160
BmgT120I GGNCC 2 cut(s) 91, 160
Bpu10I CCTNAGC 1 cut(s) 235
Bpu1102I GCTNAGC 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 143
BsaWI WCCGGW 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 279
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 279
BseXI GCAGC 4 cut(s) 45, 127, 130, 271
BsgI GTGCAG 1 cut(s) 39
BsiSI CCGG 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 100
BsmI GAATGC 1 cut(s) 61
Bsp1720I GCTNAGC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 71
BsrI ACTGG 1 cut(s) 279
Bst6I CTCTTC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 321
BstDEI CTNAG 3 cut(s) 147, 235, 334
BstF5I GGATG 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstV1I GCAGC 4 cut(s) 45, 127, 130, 271
BtsCI GGATG 1 cut(s) 79
BveI ACCTGC 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 321
Cfr13I GGNCC 2 cut(s) 91, 160
CviAII CATG 1 cut(s) 247
CviJI RGCY 8 cut(s) 13, 58, 140, 234, 253, 284, 299, 323
CviKI_1 RGCY 8 cut(s) 13, 58, 140, 234, 253, 284, 299, 323
DdeI CTNAG 3 cut(s) 147, 235, 334
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Eco47I GGWCC 2 cut(s) 91, 160
FaeI CATG 1 cut(s) 250
FaiI YATR 2 cut(s) 111, 248
FatI CATG 1 cut(s) 246
Fnu4HI GCNGC 4 cut(s) 59, 141, 144, 285
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 4 cut(s) 59, 141, 144, 285
FspBI CTAG 2 cut(s) 168, 230
GluI GCNGC 4 cut(s) 59, 141, 144, 285
HapII CCGG 1 cut(s) 163
Hin1II CATG 1 cut(s) 250
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 3 cut(s) 171, 181, 330
HpaII CCGG 1 cut(s) 163
Hpy188III TCNNGA 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 20, 61
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 3 cut(s) 147, 235, 334
Hsp92II CATG 1 cut(s) 250
LpnPI CCDG 6 cut(s) 42, 66, 168, 176, 260, 321
Lsp1109I GCAGC 4 cut(s) 45, 127, 130, 271
MaeI CTAG 2 cut(s) 168, 230
MaeIII GTNAC 1 cut(s) 178
MboII GAAGA 3 cut(s) 16, 35, 52
MluCI AATT 1 cut(s) 96
MlyI GAGTC 1 cut(s) 175
MnlI CCTC 4 cut(s) 151, 218, 301, 309
MseI TTAA 3 cut(s) 105, 294, 340
MspI CCGG 1 cut(s) 163
Mva1269I GAATGC 1 cut(s) 61
MwoI GCNNNNNNNGC 1 cut(s) 64
NlaIII CATG 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 178
PaqCI CACCTGC 1 cut(s) 71
PctI GAATGC 1 cut(s) 61
PfeI GAWTC 2 cut(s) 171, 330
PflMI CCANNNNNTGG 1 cut(s) 100
PkrI GCNGC 4 cut(s) 60, 142, 145, 286
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PspPI GGNCC 2 cut(s) 91, 160
SaqAI TTAA 3 cut(s) 105, 294, 340
SatI GCNGC 4 cut(s) 59, 141, 144, 285
Sau96I GGNCC 2 cut(s) 91, 160
SchI GAGTC 1 cut(s) 175
SetI ASST 9 cut(s) 15, 31, 60, 85, 138, 229, 301, 325, 340
SinI GGWCC 2 cut(s) 91, 160
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 1 cut(s) 96
SspMI CTAG 2 cut(s) 168, 230
TaqI TCGA 2 cut(s) 184, 263
TasI AATT 1 cut(s) 96
TfiI GAWTC 2 cut(s) 171, 330
Tru1I TTAA 3 cut(s) 105, 294, 340
Tru9I TTAA 3 cut(s) 105, 294, 340
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 4 cut(s) 58, 140, 143, 284
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 4 cut(s) 17, 23, 90, 263
Van91I CCANNNNNTGG 1 cut(s) 100
VpaK11BI GGWCC 2 cut(s) 91, 160
XapI RAATTY 1 cut(s) 96
XspI CTAG 2 cut(s) 168, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.