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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G49870 AT1G49870 |
| fragaria_vesca | FvH4_2g03900 FvH4_2g03900 FvH4_2g03900 FvH4_2g03900 FvH4_2g03900 |
| malus_domestica | MD05G1096200.v1.1 MD10G1102500.v1.1 |
| prunus_persica | Prupe.8G140600_v2.0.a1 |
| pyrus_communis | pycom05g09500 pycom10g08830 |
| rosa_chinensis | RchiOBHm_Chr6g0252931 RchiOBHm_Chr6g0252961 |
| rosa_laevigata | RLG00000015047 |
| rosa_multiflora | Rmu_co8415545.1_g000001 Rmu_sc0002560.1_g000002 Rmu_sc0016103.1_g000002 Rmu_sc0016103.1_g000006 Rmu_sc0021616.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00212270 |
| rosa_rugosa | Rorug05G0541600 Rorug05G0542200 |
| rosa_samantha | Rh6AG055900 Rh6AG056200 Rh6BG050200 Rh6CG048600 Rh6DG044200 |
| rosa_wichuraiana | Rw6G005070 Rw6G005130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2046 |
| AarI | CACCTGC | 1 cut(s) | 1907 |
| Acc36I | ACCTGC | 1 cut(s) | 1907 |
| AccII | CGCG | 2 cut(s) | 54, 247 |
| AclWI | GGATC | 8 cut(s) | 463, 476, 868, 1106, 1180, 1813, 1972, 2567 |
| AcoI | YGGCCR | 1 cut(s) | 1557 |
| AcuI | CTGAAG | 8 cut(s) | 507, 543, 822, 1156, 1403, 1509, 1980, 2193 |
| AcvI | CACGTG | 2 cut(s) | 1246, 2207 |
| AcyI | GRCGYC | 1 cut(s) | 63 |
| AfaI | GTAC | 3 cut(s) | 414, 714, 1169 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 123, 127, 128, 1367, 1504, 1916, 2158 |
| AflII | CTTAAG | 1 cut(s) | 269 |
| AflIII | ACRYGT | 3 cut(s) | 1648, 2116, 2524 |
| AjnI | CCWGG | 3 cut(s) | 122, 1360, 1674 |
| Alw26I | GTCTC | 6 cut(s) | 320, 1009, 1124, 1657, 1949, 2383 |
| AlwI | GGATC | 8 cut(s) | 463, 476, 868, 1106, 1180, 1813, 1972, 2567 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 857 |
| Ama87I | CYCGRG | 1 cut(s) | 1010 |
| AoxI | GGCC | 5 cut(s) | 1341, 1557, 1941, 2519, 2550 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2186, 2218 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 762, 1356, 1452 |
| AspLEI | GCGC | 1 cut(s) | 56 |
| AspS9I | GGNCC | 3 cut(s) | 4, 2230, 2467 |
| AsuHPI | GGTGA | 2 cut(s) | 347, 1931 |
| AsuII | TTCGAA | 3 cut(s) | 766, 1532, 2052 |
| AsuNHI | GCTAGC | 1 cut(s) | 155 |
| AvaI | CYCGRG | 1 cut(s) | 1010 |
| AvaII | GGWCC | 3 cut(s) | 4, 2230, 2467 |
| AxyI | CCTNAGG | 1 cut(s) | 365 |
| BamHI | GGATCC | 1 cut(s) | 468 |
| BbrPI | CACGTG | 2 cut(s) | 1246, 2207 |
| BbsI | GAAGAC | 3 cut(s) | 2043, 2304, 2433 |
| BccI | CCATC | 7 cut(s) | 121, 296, 739, 1172, 1502, 1855, 2324 |
| BceAI | ACGGC | 2 cut(s) | 50, 530 |
| BciT130I | CCWGG | 3 cut(s) | 124, 1362, 1676 |
| BcoDI | GTCTC | 6 cut(s) | 320, 1009, 1124, 1657, 1949, 2383 |
| BfaI | CTAG | 6 cut(s) | 156, 332, 1223, 1911, 1970, 2537 |
| BfmI | CTRYAG | 8 cut(s) | 290, 516, 690, 1059, 1308, 1329, 1889, 2198 |
| BfrI | CTTAAG | 1 cut(s) | 269 |
| BfuAI | ACCTGC | 1 cut(s) | 1907 |
| BlpI | GCTNAGC | 2 cut(s) | 2286, 2415 |
| BmcAI | AGTACT | 1 cut(s) | 1169 |
| Bme1390I | CCNGG | 3 cut(s) | 124, 1362, 1676 |
| Bme18I | GGWCC | 3 cut(s) | 4, 2230, 2467 |
| BmeT110I | CYCGRG | 1 cut(s) | 1010 |
| BmgT120I | GGNCC | 3 cut(s) | 4, 2230, 2467 |
| BmiI | GGNNCC | 3 cut(s) | 470, 1724, 2468 |
| BmrFI | CCNGG | 3 cut(s) | 124, 1362, 1676 |
| BmsI | GCATC | 6 cut(s) | 39, 446, 659, 915, 996, 1383 |
| BmtI | GCTAGC | 1 cut(s) | 159 |
| BpiI | GAAGAC | 3 cut(s) | 2043, 2304, 2433 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 95, 127, 1595, 1627 |
| BpmI | CTGGAG | 1 cut(s) | 2150 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1090, 2374, 2503 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2286, 2415 |
| Bpu14I | TTCGAA | 3 cut(s) | 766, 1532, 2052 |
| BpuEI | CTTGAG | 2 cut(s) | 1639, 1682 |
| BsaAI | YACGTR | 2 cut(s) | 1246, 2207 |
| BsaBI | GATNNNNATC | 2 cut(s) | 342, 912 |
| BsaHI | GRCGYC | 1 cut(s) | 63 |
| BsaI | GGTCTC | 2 cut(s) | 1124, 2383 |
| BsaJI | CCNNGG | 5 cut(s) | 7, 122, 245, 546, 581 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 123, 127, 128, 1367, 1504, 1916, 2158 |
| Bse1I | ACTGG | 2 cut(s) | 242, 2133 |
| Bse21I | CCTNAGG | 1 cut(s) | 365 |
| Bse3DI | GCAATG | 3 cut(s) | 411, 1593, 2340 |
| Bse8I | GATNNNNATC | 2 cut(s) | 342, 912 |
| BseBI | CCWGG | 3 cut(s) | 124, 1362, 1676 |
| BseDI | CCNNGG | 5 cut(s) | 7, 122, 245, 546, 581 |
| BseGI | GGATG | 5 cut(s) | 132, 312, 605, 1374, 1494 |
| BseJI | GATNNNNATC | 2 cut(s) | 342, 912 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 123, 127, 128, 1367, 1504, 1916, 2158 |
| BseMI | GCAATG | 3 cut(s) | 411, 1593, 2340 |
| BseMII | CTCAG | 8 cut(s) | 90, 819, 1119, 1155, 1626, 2300, 2378, 2429 |
| BseNI | ACTGG | 2 cut(s) | 242, 2133 |
| BseRI | GAGGAG | 3 cut(s) | 219, 1452, 2591 |
| BseYI | CCCAGC | 3 cut(s) | 492, 1115, 1622 |
| BsgI | GTGCAG | 6 cut(s) | 177, 378, 1091, 1935, 2175, 2229 |
| Bsh1236I | CGCG | 2 cut(s) | 54, 247 |
| BshFI | GGCC | 5 cut(s) | 1343, 1559, 1943, 2521, 2552 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1010 |
| BslFI | GGGAC | 1 cut(s) | 2480 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 123, 127, 128, 1367, 1504, 1916, 2158 |
| BsmAI | GTCTC | 6 cut(s) | 320, 1009, 1124, 1657, 1949, 2383 |
| BsmFI | GGGAC | 1 cut(s) | 2480 |
| BsnI | GGCC | 5 cut(s) | 1343, 1559, 1943, 2521, 2552 |
| Bso31I | GGTCTC | 2 cut(s) | 1124, 2383 |
| BsoBI | CYCGRG | 1 cut(s) | 1010 |
| Bsp119I | TTCGAA | 3 cut(s) | 766, 1532, 2052 |
| Bsp143I | GATC | 8 cut(s) | 279, 468, 860, 1111, 1185, 1805, 1977, 2559 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2286, 2415 |
| BspANI | GGCC | 5 cut(s) | 1343, 1559, 1943, 2521, 2552 |
| BspCNI | CTCAG | 8 cut(s) | 89, 820, 1120, 1156, 1625, 2299, 2379, 2428 |
| BspFNI | CGCG | 2 cut(s) | 54, 247 |
| BspHI | TCATGA | 1 cut(s) | 817 |
| BspLI | GGNNCC | 3 cut(s) | 470, 1724, 2468 |
| BspMAI | CTGCAG | 6 cut(s) | 294, 520, 694, 1333, 1893, 2202 |
| BspMI | ACCTGC | 1 cut(s) | 1907 |
| BspOI | GCTAGC | 1 cut(s) | 159 |
| BspPI | GGATC | 8 cut(s) | 463, 476, 868, 1106, 1180, 1813, 1972, 2567 |
| BspT104I | TTCGAA | 3 cut(s) | 766, 1532, 2052 |
| BspTI | CTTAAG | 1 cut(s) | 269 |
| BspTNI | GGTCTC | 2 cut(s) | 1124, 2383 |
| BsrDI | GCAATG | 3 cut(s) | 411, 1593, 2340 |
| BsrI | ACTGG | 2 cut(s) | 242, 2133 |
| BssECI | CCNNGG | 5 cut(s) | 7, 122, 245, 546, 581 |
| BssMI | GATC | 8 cut(s) | 279, 468, 860, 1111, 1185, 1805, 1977, 2559 |
| BssNI | GRCGYC | 1 cut(s) | 63 |
| Bst2UI | CCWGG | 3 cut(s) | 124, 1362, 1676 |
| Bst4CI | ACNGT | 5 cut(s) | 613, 643, 1309, 2042, 2596 |
| Bst6I | CTCTTC | 6 cut(s) | 528, 1051, 1410, 1842, 2174, 2576 |
| BstACI | GRCGYC | 1 cut(s) | 63 |
| BstAFI | CTTAAG | 1 cut(s) | 269 |
| BstBAI | YACGTR | 2 cut(s) | 1246, 2207 |
| BstBI | TTCGAA | 3 cut(s) | 766, 1532, 2052 |
| BstC8I | GCNNGC | 5 cut(s) | 118, 157, 1103, 1698, 2022 |
| BstDSI | CCRYGG | 2 cut(s) | 245, 546 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1914 |
| BstF5I | GGATG | 5 cut(s) | 132, 312, 605, 1374, 1494 |
| BstFNI | CGCG | 2 cut(s) | 54, 247 |
| BstHHI | GCGC | 1 cut(s) | 56 |
| BstKTI | GATC | 8 cut(s) | 282, 471, 863, 1114, 1188, 1808, 1980, 2562 |
| BstMAI | GTCTC | 6 cut(s) | 320, 1009, 1124, 1657, 1949, 2383 |
| BstMBI | GATC | 8 cut(s) | 279, 468, 860, 1111, 1185, 1805, 1977, 2559 |
| BstNI | CCWGG | 3 cut(s) | 124, 1362, 1676 |
| BstNSI | RCATGY | 3 cut(s) | 2120, 2223, 2528 |
| BstSCI | CCNGG | 3 cut(s) | 122, 1360, 1674 |
| BstSFI | CTRYAG | 8 cut(s) | 290, 516, 690, 1059, 1308, 1329, 1889, 2198 |
| BstUI | CGCG | 2 cut(s) | 54, 247 |
| BstV2I | GAAGAC | 3 cut(s) | 2043, 2304, 2433 |
| BstX2I | RGATCY | 3 cut(s) | 468, 1185, 1977 |
| BstYI | RGATCY | 3 cut(s) | 468, 1185, 1977 |
| Bsu36I | CCTNAGG | 1 cut(s) | 365 |
| BsuRI | GGCC | 5 cut(s) | 1343, 1559, 1943, 2521, 2552 |
| BtgI | CCRYGG | 2 cut(s) | 245, 546 |
| BtsCI | GGATG | 5 cut(s) | 132, 312, 605, 1374, 1494 |
| BtsI | GCAGTG | 2 cut(s) | 189, 1886 |
| BtsIMutI | CAGTG | 4 cut(s) | 189, 609, 1815, 1886 |
| BveI | ACCTGC | 1 cut(s) | 1907 |
| Cac8I | GCNNGC | 5 cut(s) | 118, 157, 1103, 1698, 2022 |
| CaiI | CAGNNNCTG | 1 cut(s) | 857 |
| CciI | TCATGA | 1 cut(s) | 817 |
| CfoI | GCGC | 1 cut(s) | 56 |
| Cfr13I | GGNCC | 3 cut(s) | 4, 2230, 2467 |
| Cfr42I | CCGCGG | 1 cut(s) | 248 |
| CseI | GACGC | 1 cut(s) | 71 |
| Csp6I | GTAC | 3 cut(s) | 413, 713, 1168 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 528, 563, 1045, 1080 |
| CviAII | CATG | 9 cut(s) | 559, 818, 1003, 1388, 1709, 2117, 2220, 2515, 2525 |
| CviQI | GTAC | 3 cut(s) | 413, 713, 1168 |
| DpnI | GATC | 8 cut(s) | 281, 470, 862, 1113, 1187, 1807, 1979, 2561 |
| DpnII | GATC | 8 cut(s) | 279, 468, 860, 1111, 1185, 1805, 1977, 2559 |
| DraI | TTTAAA | 2 cut(s) | 754, 1080 |
| EaeI | YGGCCR | 1 cut(s) | 1557 |
| Eam1104I | CTCTTC | 6 cut(s) | 528, 1051, 1410, 1842, 2174, 2576 |
| EarI | CTCTTC | 6 cut(s) | 528, 1051, 1410, 1842, 2174, 2576 |
| EciI | GGCGGA | 2 cut(s) | 103, 636 |
| Eco31I | GGTCTC | 2 cut(s) | 1124, 2383 |
| Eco47I | GGWCC | 3 cut(s) | 4, 2230, 2467 |
| Eco57I | CTGAAG | 8 cut(s) | 507, 543, 822, 1156, 1403, 1509, 1980, 2193 |
| Eco72I | CACGTG | 2 cut(s) | 1246, 2207 |
| Eco81I | CCTNAGG | 1 cut(s) | 365 |
| Eco88I | CYCGRG | 1 cut(s) | 1010 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1914 |
| EcoRI | GAATTC | 4 cut(s) | 172, 1315, 1462, 1852 |
| EcoRII | CCWGG | 3 cut(s) | 122, 1360, 1674 |
| FaeI | CATG | 9 cut(s) | 562, 821, 1006, 1391, 1712, 2120, 2223, 2518, 2528 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 747, 779, 952, 984, 1553, 1585, 1867, 1899 |
| FaqI | GGGAC | 1 cut(s) | 2480 |
| FatI | CATG | 9 cut(s) | 558, 817, 1002, 1387, 1708, 2116, 2219, 2514, 2524 |
| FokI | GGATG | 5 cut(s) | 139, 319, 592, 1361, 1481 |
| FspBI | CTAG | 6 cut(s) | 156, 332, 1223, 1911, 1970, 2537 |
| GlaI | GCGC | 1 cut(s) | 55 |
| GsaI | CCCAGC | 3 cut(s) | 496, 1119, 1626 |
| GsuI | CTGGAG | 1 cut(s) | 2150 |
| HaeIII | GGCC | 5 cut(s) | 1343, 1559, 1943, 2521, 2552 |
| HgaI | GACGC | 1 cut(s) | 71 |
| HhaI | GCGC | 1 cut(s) | 56 |
| Hin1I | GRCGYC | 1 cut(s) | 63 |
| Hin1II | CATG | 9 cut(s) | 562, 821, 1006, 1391, 1712, 2120, 2223, 2518, 2528 |
| Hin6I | GCGC | 1 cut(s) | 54 |
| HinP1I | GCGC | 1 cut(s) | 54 |
| HincII | GTYRAC | 1 cut(s) | 181 |
| HindII | GTYRAC | 1 cut(s) | 181 |
| HindIII | AAGCTT | 8 cut(s) | 525, 977, 1253, 1535, 1881, 2022, 2371, 2500 |
| HpaI | GTTAAC | 1 cut(s) | 181 |
| HphI | GGTGA | 2 cut(s) | 347, 1931 |
| Hpy166II | GTNNAC | 2 cut(s) | 181, 834 |
| Hpy8I | GTNNAC | 2 cut(s) | 181, 834 |
| Hpy99I | CGWCG | 1 cut(s) | 65 |
| HpyCH4III | ACNGT | 5 cut(s) | 613, 643, 1309, 2042, 2596 |
| HpyCH4IV | ACGT | 4 cut(s) | 1245, 1648, 2206, 2542 |
| HpySE526I | ACGT | 4 cut(s) | 1245, 1648, 2206, 2542 |
| Hsp92I | GRCGYC | 1 cut(s) | 63 |
| Hsp92II | CATG | 9 cut(s) | 562, 821, 1006, 1391, 1712, 2120, 2223, 2518, 2528 |
| HspAI | GCGC | 1 cut(s) | 54 |
| KspAI | GTTAAC | 1 cut(s) | 181 |
| KspI | CCGCGG | 1 cut(s) | 248 |
| Kzo9I | GATC | 8 cut(s) | 279, 468, 860, 1111, 1185, 1805, 1977, 2559 |
| LmnI | GCTCC | 1 cut(s) | 1864 |
| LweI | GCATC | 6 cut(s) | 39, 446, 659, 915, 996, 1383 |
| MaeI | CTAG | 6 cut(s) | 156, 332, 1223, 1911, 1970, 2537 |
| MaeII | ACGT | 4 cut(s) | 1245, 1648, 2206, 2542 |
| MaeIII | GTNAC | 4 cut(s) | 643, 1246, 1592, 2202 |
| MalI | GATC | 8 cut(s) | 281, 470, 862, 1113, 1187, 1807, 1979, 2561 |
| MboI | GATC | 8 cut(s) | 279, 468, 860, 1111, 1185, 1805, 1977, 2559 |
| MflI | RGATCY | 3 cut(s) | 468, 1185, 1977 |
| MlyI | GAGTC | 6 cut(s) | 68, 254, 322, 668, 1600, 1604 |
| MmeI | TCCRAC | 1 cut(s) | 1983 |
| MroXI | GAANNNNTTC | 3 cut(s) | 762, 1356, 1452 |
| MslI | CAYNNNNRTG | 2 cut(s) | 35, 442 |
| MspA1I | CMGCKG | 4 cut(s) | 247, 496, 521, 695 |
| MspCI | CTTAAG | 1 cut(s) | 269 |
| MspR9I | CCNGG | 3 cut(s) | 124, 1362, 1676 |
| MvaI | CCWGG | 3 cut(s) | 124, 1362, 1676 |
| MvnI | CGCG | 2 cut(s) | 54, 247 |
| NdeII | GATC | 8 cut(s) | 279, 468, 860, 1111, 1185, 1805, 1977, 2559 |
| NheI | GCTAGC | 1 cut(s) | 155 |
| NlaIII | CATG | 9 cut(s) | 562, 821, 1006, 1391, 1712, 2120, 2223, 2518, 2528 |
| NlaIV | GGNNCC | 3 cut(s) | 470, 1724, 2468 |
| NmeAIII | GCCGAG | 1 cut(s) | 127 |
| NmuCI | GTSAC | 3 cut(s) | 1246, 1592, 2202 |
| NspI | RCATGY | 3 cut(s) | 2120, 2223, 2528 |
| NspV | TTCGAA | 3 cut(s) | 766, 1532, 2052 |
| PaeR7I | CTCGAG | 1 cut(s) | 1010 |
| PagI | TCATGA | 1 cut(s) | 817 |
| PaqCI | CACCTGC | 1 cut(s) | 1907 |
| PciI | ACATGT | 2 cut(s) | 2116, 2524 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 99 |
| PdmI | GAANNNNTTC | 3 cut(s) | 762, 1356, 1452 |
| PfeI | GAWTC | 6 cut(s) | 338, 821, 848, 854, 913, 2078 |
| PfoI | TCCNGGA | 1 cut(s) | 1674 |
| PleI | GAGTC | 6 cut(s) | 68, 254, 322, 667, 1599, 1604 |
| PmaCI | CACGTG | 2 cut(s) | 1246, 2207 |
| PmlI | CACGTG | 2 cut(s) | 1246, 2207 |
| PpsI | GAGTC | 6 cut(s) | 68, 254, 322, 667, 1599, 1604 |
| Ppu21I | YACGTR | 2 cut(s) | 1246, 2207 |
| PscI | ACATGT | 2 cut(s) | 2116, 2524 |
| PsiI | TTATAA | 1 cut(s) | 2046 |
| Psp6I | CCWGG | 3 cut(s) | 122, 1360, 1674 |
| PspCI | CACGTG | 2 cut(s) | 1246, 2207 |
| PspFI | CCCAGC | 3 cut(s) | 492, 1115, 1622 |
| PspGI | CCWGG | 3 cut(s) | 122, 1360, 1674 |
| PspN4I | GGNNCC | 3 cut(s) | 470, 1724, 2468 |
| PspPI | GGNCC | 3 cut(s) | 4, 2230, 2467 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1151, 1183 |
| PstI | CTGCAG | 6 cut(s) | 294, 520, 694, 1333, 1893, 2202 |
| PstNI | CAGNNNCTG | 1 cut(s) | 857 |
| PsuI | RGATCY | 3 cut(s) | 468, 1185, 1977 |
| PvuII | CAGCTG | 3 cut(s) | 496, 521, 695 |
| RsaI | GTAC | 3 cut(s) | 414, 714, 1169 |
| RsaNI | GTAC | 3 cut(s) | 413, 713, 1168 |
| RseI | CAYNNNNRTG | 2 cut(s) | 35, 442 |
| SacII | CCGCGG | 1 cut(s) | 248 |
| Sau3AI | GATC | 8 cut(s) | 279, 468, 860, 1111, 1185, 1805, 1977, 2559 |
| Sau96I | GGNCC | 3 cut(s) | 4, 2230, 2467 |
| ScaI | AGTACT | 1 cut(s) | 1169 |
| SchI | GAGTC | 6 cut(s) | 68, 254, 322, 668, 1600, 1604 |
| ScrFI | CCNGG | 3 cut(s) | 124, 1362, 1676 |
| SfaNI | GCATC | 6 cut(s) | 39, 446, 659, 915, 996, 1383 |
| SfcI | CTRYAG | 8 cut(s) | 290, 516, 690, 1059, 1308, 1329, 1889, 2198 |
| Sfr274I | CTCGAG | 1 cut(s) | 1010 |
| Sfr303I | CCGCGG | 1 cut(s) | 248 |
| SfuI | TTCGAA | 3 cut(s) | 766, 1532, 2052 |
| SgrBI | CCGCGG | 1 cut(s) | 248 |
| SinI | GGWCC | 3 cut(s) | 4, 2230, 2467 |
| SlaI | CTCGAG | 1 cut(s) | 1010 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 35, 442 |
| SmlI | CTYRAG | 4 cut(s) | 269, 1010, 1654, 1661 |
| SmoI | CTYRAG | 4 cut(s) | 269, 1010, 1654, 1661 |
| SspMI | CTAG | 6 cut(s) | 156, 332, 1223, 1911, 1970, 2537 |
| StyD4I | CCNGG | 3 cut(s) | 122, 1360, 1674 |
| TaaI | ACNGT | 5 cut(s) | 613, 643, 1309, 2042, 2596 |
| TaiI | ACGT | 4 cut(s) | 1248, 1651, 2209, 2545 |
| TaqII | GACCGA | 1 cut(s) | 2484 |
| TatI | WGTACW | 2 cut(s) | 712, 1167 |
| TauI | GCSGC | 5 cut(s) | 98, 101, 1559, 2408, 2555 |
| TfiI | GAWTC | 6 cut(s) | 338, 821, 848, 854, 913, 2078 |
| TscAI | CASTG | 4 cut(s) | 196, 616, 1815, 1893 |
| TseFI | GTSAC | 3 cut(s) | 1246, 1592, 2202 |
| Tsp45I | GTSAC | 3 cut(s) | 1246, 1592, 2202 |
| TspDTI | ATGAA | 6 cut(s) | 323, 762, 834, 1053, 1725, 1887 |
| TspGWI | ACGGA | 1 cut(s) | 2141 |
| TspRI | CASTG | 4 cut(s) | 196, 616, 1815, 1893 |
| Vha464I | CTTAAG | 1 cut(s) | 269 |
| VpaK11BI | GGWCC | 3 cut(s) | 4, 2230, 2467 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1914 |
| XbaI | TCTAGA | 2 cut(s) | 1222, 1969 |
| XceI | RCATGY | 3 cut(s) | 2120, 2223, 2528 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 124, 1363, 1501 |
| XhoI | CTCGAG | 1 cut(s) | 1010 |
| XmnI | GAANNNNTTC | 3 cut(s) | 762, 1356, 1452 |
| XspI | CTAG | 6 cut(s) | 156, 332, 1223, 1911, 1970, 2537 |
| ZrmI | AGTACT | 1 cut(s) | 1169 |