Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8415545.1

Orthogroup ID

OG0005104

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1354

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8415545.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

atgaatttaactcttgatgagactctaggtgattctaatccgcattactcaaaggtcctgagggaaaaaatggcagcaagagaagctgcacaaaaggcaatgcaggcacgaaaagctgcattggtggaagcatcatggtgtcgaatacttctggcagccaggattcaaagcaaagaagcagaagctgaactgttgaaagcagacaaagctgctgccgaagcttttgaggtggcatcatccatgggagttatcatgtatgacataccaaactgcactcgcaagccttttgtagaaacatccactaaagatggaggaaagtcgactacccacacagtcacagcatcttttgagactgcatttgaggtggacaaagaagtagctgctgctgtcaaggtagcattagttaggcttggaaacagcccttcttttagtaaagatgaattcaaagaactgcttcgaaaaattagtgagaatcctgatacaggtgaaaataatcagttcagttcagaatatgaatcagaatctggatcagaacttgaagcagtggccgagaaagataatgtaagttcccaagatttggatcgtaagatgcaaggtttggaggtaagacaaaagaaaaatagaaggcagtcttttggaaagcttaatacggaaaatatagtggtcatgattctcgagaggcttcaatgcttgaaagaagaggaactctcttctcttgccactatagttgctacttgtggtttaaatgccgccttggcagagagcaagctgcttggtccaggatctgctgctgagacatttccgcgaaggatgtcttctttaggagcagggaagcctgaatacttctcagatgggcagataagaaggaaggaaattaaatcagaactcccaagtctagacaagtttttggttaagcacatgactaagcttgaaaaagaagtgcaagaagccaagaatagaaggaatgagtctaaggaaggaactgtgggaaattccgatagaatcattgatgagaaggccagttcagataaaagccaaattacctcagagactgttccaggattgggaactatccttttgaagcatggttcaaagtttgagaaggagatcgaagaggcaaaggaaaattcaagaggagaatttgaaacacttaagaagaactcagagagaaacaaaacatcatctgagaccactcctagcttggaaagtatgctgattaaacattcttcaaaacttgaaaaggaagttgaagaggccaagaagaacttt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

423

Amino Acids

46.85

Weight (kDa)

6.0

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49870 AT1G49870
fragaria_vesca	FvH4_2g03900 FvH4_2g03900 FvH4_2g03900 FvH4_2g03900 FvH4_2g03900
malus_domestica	MD05G1096200.v1.1 MD10G1102500.v1.1
prunus_persica	Prupe.8G140600_v2.0.a1
pyrus_communis	pycom05g09500 pycom10g08830
rosa_chinensis	RchiOBHm_Chr6g0252931 RchiOBHm_Chr6g0252961
rosa_laevigata	RLG00000015047
rosa_multiflora	Rmu_co8415545.1_g000001 Rmu_sc0002560.1_g000002 Rmu_sc0016103.1_g000002 Rmu_sc0016103.1_g000006 Rmu_sc0021616.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212270
rosa_rugosa	Rorug05G0541600 Rorug05G0542200
rosa_samantha	Rh6AG055900 Rh6AG056200 Rh6BG050200 Rh6CG048600 Rh6DG044200
rosa_wichuraiana	Rw6G005070 Rw6G005130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	577
AccI	GTMKAC	1 cut(s)	320
AccII	CGCG	1 cut(s)	805
AciI	CCGC	3 cut(s)	41, 750, 803
AclWI	GGATC	3 cut(s)	535, 588, 790
AcoI	YGGCCR	1 cut(s)	546
AcsI	RAATTY	5 cut(s)	4, 440, 991, 1126, 1139
AfiI	CCNNNNNNNGG	3 cut(s)	482, 577, 1064
AflII	CTTAAG	1 cut(s)	1151
AjnI	CCWGG	3 cut(s)	158, 778, 1057
Alw26I	GTCTC	5 cut(s)	14, 344, 788, 1043, 1181
AlwI	GGATC	3 cut(s)	535, 588, 790
AlwNI	CAGNNNCTG	4 cut(s)	185, 524, 785, 1052
Ama87I	CYCGRG	1 cut(s)	674
AoxI	GGCC	3 cut(s)	546, 1017, 1254
ApoI	RAATTY	5 cut(s)	4, 440, 991, 1126, 1139
Asp700I	GAANNNNTTC	1 cut(s)	453
AspS9I	GGNCC	2 cut(s)	55, 776
AsuHPI	GGTGA	2 cut(s)	41, 497
AsuII	TTCGAA	1 cut(s)	457
AvaI	CYCGRG	1 cut(s)	674
AvaII	GGWCC	2 cut(s)	55, 776
AxyI	CCTNAGG	1 cut(s)	59
BarI	GAAGNNNNNNTAC	2 cut(s)	824, 856
BbsI	GAAGAC	1 cut(s)	807
BccI	CCATC	2 cut(s)	302, 845
BciT130I	CCWGG	3 cut(s)	160, 780, 1059
BcoDI	GTCTC	5 cut(s)	14, 344, 788, 1043, 1181
BfaI	CTAG	3 cut(s)	26, 896, 1197
BfmI	CTRYAG	1 cut(s)	723
BfrI	CTTAAG	1 cut(s)	1151
BglI	GCCNNNNNGGC	1 cut(s)	755
Bme1390I	CCNGG	3 cut(s)	160, 780, 1059
Bme18I	GGWCC	2 cut(s)	55, 776
BmeT110I	CYCGRG	1 cut(s)	674
BmgT120I	GGNCC	2 cut(s)	55, 776
BmrFI	CCNGG	3 cut(s)	160, 780, 1059
BmsI	GCATC	4 cut(s)	140, 242, 350, 579
BpiI	GAAGAC	1 cut(s)	807
BplI	GAGNNNNNCTC	2 cut(s)	692, 724
Bpu14I	TTCGAA	1 cut(s)	457
BsaBI	GATNNNNATC	2 cut(s)	36, 579
BsaI	GGTCTC	1 cut(s)	1181
BsaJI	CCNNGG	2 cut(s)	240, 753
Bsc4I	CCNNNNNNNGG	3 cut(s)	482, 577, 1064
Bse1I	ACTGG	1 cut(s)	1020
Bse21I	CCTNAGG	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	105
Bse8I	GATNNNNATC	2 cut(s)	36, 579
BseBI	CCWGG	3 cut(s)	160, 780, 1059
BseDI	CCNNGG	2 cut(s)	240, 753
BseGI	GGATG	3 cut(s)	236, 296, 816
BseJI	GATNNNNATC	2 cut(s)	36, 579
BseLI	CCNNNNNNNGG	3 cut(s)	482, 577, 1064
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	6 cut(s)	50, 783, 861, 1059, 1176, 1176
BseNI	ACTGG	1 cut(s)	1020
BseRI	GAGGAG	1 cut(s)	1149
BsgI	GTGCAG	2 cut(s)	72, 256
Bsh1236I	CGCG	1 cut(s)	805
BshFI	GGCC	3 cut(s)	548, 1019, 1256
BsiHKCI	CYCGRG	1 cut(s)	674
BslI	CCNNNNNNNGG	3 cut(s)	482, 577, 1064
BsmAI	GTCTC	5 cut(s)	14, 344, 788, 1043, 1181
BsnI	GGCC	3 cut(s)	548, 1019, 1256
Bso31I	GGTCTC	1 cut(s)	1181
BsoBI	CYCGRG	1 cut(s)	674
Bsp119I	TTCGAA	1 cut(s)	457
Bsp143I	GATC	4 cut(s)	527, 580, 782, 1107
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	3 cut(s)	41, 750, 803
BspANI	GGCC	3 cut(s)	548, 1019, 1256
BspCNI	CTCAG	6 cut(s)	51, 784, 860, 1058, 1175, 1177
BspFNI	CGCG	1 cut(s)	805
BspHI	TCATGA	1 cut(s)	666
BspPI	GGATC	3 cut(s)	535, 588, 790
BspT104I	TTCGAA	1 cut(s)	457
BspTI	CTTAAG	1 cut(s)	1151
BspTNI	GGTCTC	1 cut(s)	1181
BsrDI	GCAATG	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	1020
BssECI	CCNNGG	2 cut(s)	240, 753
BssMI	GATC	4 cut(s)	527, 580, 782, 1107
BssT1I	CCWWGG	2 cut(s)	240, 753
Bst2UI	CCWGG	3 cut(s)	160, 780, 1059
Bst4CI	ACNGT	4 cut(s)	192, 334, 985, 1054
Bst6I	CTCTTC	4 cut(s)	693, 715, 1107, 1245
BstAFI	CTTAAG	1 cut(s)	1151
BstBI	TTCGAA	1 cut(s)	457
BstC8I	GCNNGC	3 cut(s)	105, 281, 767
BstDEI	CTNAG	8 cut(s)	59, 792, 847, 924, 972, 1045, 1162, 1185
BstDSI	CCRYGG	1 cut(s)	240
BstENI	CCTNNNNNAGG	1 cut(s)	480
BstF5I	GGATG	3 cut(s)	236, 296, 816
BstFNI	CGCG	1 cut(s)	805
BstKTI	GATC	4 cut(s)	530, 583, 785, 1110
BstMAI	GTCTC	5 cut(s)	14, 344, 788, 1043, 1181
BstMBI	GATC	4 cut(s)	527, 580, 782, 1107
BstMWI	GCNNNNNNNGC	7 cut(s)	83, 95, 104, 113, 206, 218, 755
BstNI	CCWGG	3 cut(s)	160, 780, 1059
BstSCI	CCNGG	3 cut(s)	158, 778, 1057
BstSFI	CTRYAG	1 cut(s)	723
BstUI	CGCG	1 cut(s)	805
BstV2I	GAAGAC	1 cut(s)	807
BstX2I	RGATCY	1 cut(s)	782
BstYI	RGATCY	1 cut(s)	782
Bsu36I	CCTNAGG	1 cut(s)	59
BsuRI	GGCC	3 cut(s)	548, 1019, 1256
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	3 cut(s)	236, 296, 816
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	1 cut(s)	549
Cac8I	GCNNGC	3 cut(s)	105, 281, 767
CaiI	CAGNNNCTG	4 cut(s)	185, 524, 785, 1052
CciI	TCATGA	1 cut(s)	666
Cfr13I	GGNCC	2 cut(s)	55, 776
CspCI	CAANNNNNGTGG	2 cut(s)	709, 744
CviAII	CATG	6 cut(s)	135, 241, 253, 667, 919, 1085
DdeI	CTNAG	8 cut(s)	59, 792, 847, 924, 972, 1045, 1162, 1185
DpnI	GATC	4 cut(s)	529, 582, 784, 1109
DpnII	GATC	4 cut(s)	527, 580, 782, 1107
DraI	TTTAAA	1 cut(s)	744
EaeI	YGGCCR	1 cut(s)	546
Eam1104I	CTCTTC	4 cut(s)	693, 715, 1107, 1245
EarI	CTCTTC	4 cut(s)	693, 715, 1107, 1245
Eco130I	CCWWGG	2 cut(s)	240, 753
Eco31I	GGTCTC	1 cut(s)	1181
Eco47I	GGWCC	2 cut(s)	55, 776
Eco81I	CCTNAGG	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	674
EcoNI	CCTNNNNNAGG	1 cut(s)	480
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	440
EcoRII	CCWGG	3 cut(s)	158, 778, 1057
EcoT14I	CCWWGG	2 cut(s)	240, 753
ErhI	CCWWGG	2 cut(s)	240, 753
FaeI	CATG	6 cut(s)	138, 244, 256, 670, 922, 1088
FalI	AAGNNNNNCTT	7 cut(s)	438, 470, 616, 648, 799, 831, 1250
FatI	CATG	6 cut(s)	134, 240, 252, 666, 918, 1084
FblI	GTMKAC	1 cut(s)	320
FokI	GGATG	3 cut(s)	223, 283, 823
FspBI	CTAG	3 cut(s)	26, 896, 1197
HaeIII	GGCC	3 cut(s)	548, 1019, 1256
Hin1II	CATG	6 cut(s)	138, 244, 256, 670, 922, 1088
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HindIII	AAGCTT	3 cut(s)	219, 641, 926
HinfI	GANTC	9 cut(s)	22, 32, 163, 472, 515, 521, 670, 968, 1002
HphI	GGTGA	2 cut(s)	41, 497
Hpy166II	GTNNAC	2 cut(s)	321, 367
Hpy188III	TCNNGA	9 cut(s)	14, 58, 476, 525, 667, 674, 676, 896, 1131
Hpy8I	GTNNAC	2 cut(s)	321, 367
HpyAV	CCTTC	9 cut(s)	432, 618, 801, 858, 862, 954, 971, 1009, 1096
HpyCH4III	ACNGT	4 cut(s)	192, 334, 985, 1054
HpyCH4V	TGCA	7 cut(s)	89, 103, 119, 273, 356, 592, 943
HpyF10VI	GCNNNNNNNGC	7 cut(s)	83, 95, 104, 113, 206, 218, 755
HpyF3I	CTNAG	8 cut(s)	59, 792, 847, 924, 972, 1045, 1162, 1185
Hsp92II	CATG	6 cut(s)	138, 244, 256, 670, 922, 1088
Kzo9I	GATC	4 cut(s)	527, 580, 782, 1107
LmnI	GCTCC	1 cut(s)	824
LweI	GCATC	4 cut(s)	140, 242, 350, 579
MaeI	CTAG	3 cut(s)	26, 896, 1197
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	4 cut(s)	529, 582, 784, 1109
MboI	GATC	4 cut(s)	527, 580, 782, 1107
MboII	GAAGA	7 cut(s)	702, 710, 807, 1124, 1168, 1218, 1262
MflI	RGATCY	1 cut(s)	782
MluCI	AATT	8 cut(s)	4, 440, 462, 873, 991, 1038, 1126, 1139
MlyI	GAGTC	2 cut(s)	16, 977
MroXI	GAANNNNTTC	1 cut(s)	453
MseI	TTAA	7 cut(s)	8, 645, 743, 876, 912, 1152, 1218
MslI	CAYNNNNRTG	1 cut(s)	136
MspCI	CTTAAG	1 cut(s)	1151
MspR9I	CCNGG	3 cut(s)	160, 780, 1059
MvaI	CCWGG	3 cut(s)	160, 780, 1059
MvnI	CGCG	1 cut(s)	805
MwoI	GCNNNNNNNGC	7 cut(s)	83, 95, 104, 113, 206, 218, 755
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	4 cut(s)	527, 580, 782, 1107
NlaIII	CATG	6 cut(s)	138, 244, 256, 670, 922, 1088
NmeAIII	GCCGAG	1 cut(s)	574
NmuCI	GTSAC	1 cut(s)	334
NspV	TTCGAA	1 cut(s)	457
PaeR7I	CTCGAG	1 cut(s)	674
PagI	TCATGA	1 cut(s)	666
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	7 cut(s)	32, 163, 472, 515, 521, 670, 1002
PflMI	CCANNNNNTGG	1 cut(s)	577
PfoI	TCCNGGA	2 cut(s)	778, 1057
PleI	GAGTC	2 cut(s)	16, 976
PpsI	GAGTC	2 cut(s)	16, 976
PpuMI	RGGWCCY	1 cut(s)	55
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	3 cut(s)	158, 778, 1057
PspGI	CCWGG	3 cut(s)	158, 778, 1057
PspPI	GGNCC	2 cut(s)	55, 776
PspPPI	RGGWCCY	1 cut(s)	55
PstNI	CAGNNNCTG	4 cut(s)	185, 524, 785, 1052
PsuI	RGATCY	1 cut(s)	782
RseI	CAYNNNNRTG	1 cut(s)	136
SalI	GTCGAC	1 cut(s)	319
SaqAI	TTAA	7 cut(s)	8, 645, 743, 876, 912, 1152, 1218
Sau3AI	GATC	4 cut(s)	527, 580, 782, 1107
Sau96I	GGNCC	2 cut(s)	55, 776
SchI	GAGTC	2 cut(s)	16, 977
ScrFI	CCNGG	3 cut(s)	160, 780, 1059
SfaNI	GCATC	4 cut(s)	140, 242, 350, 579
SfcI	CTRYAG	1 cut(s)	723
Sfr274I	CTCGAG	1 cut(s)	674
SfuI	TTCGAA	1 cut(s)	457
SinI	GGWCC	2 cut(s)	55, 776
SlaI	CTCGAG	1 cut(s)	674
SmiMI	CAYNNNNRTG	1 cut(s)	136
SmlI	CTYRAG	2 cut(s)	674, 1151
SmoI	CTYRAG	2 cut(s)	674, 1151
Sse9I	AATT	8 cut(s)	4, 440, 462, 873, 991, 1038, 1126, 1139
SsiI	CCGC	3 cut(s)	41, 750, 803
SspMI	CTAG	3 cut(s)	26, 896, 1197
StyD4I	CCNGG	3 cut(s)	158, 778, 1057
StyI	CCWWGG	2 cut(s)	240, 753
TaaI	ACNGT	4 cut(s)	192, 334, 985, 1054
TaqI	TCGA	5 cut(s)	142, 320, 457, 675, 1110
TasI	AATT	8 cut(s)	4, 440, 462, 873, 991, 1038, 1126, 1139
TauI	GCSGC	1 cut(s)	752
TfiI	GAWTC	7 cut(s)	32, 163, 472, 515, 521, 670, 1002
Tru1I	TTAA	7 cut(s)	8, 645, 743, 876, 912, 1152, 1218
Tru9I	TTAA	7 cut(s)	8, 645, 743, 876, 912, 1152, 1218
TscAI	CASTG	1 cut(s)	549
TseFI	GTSAC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	3 cut(s)	17, 453, 528
TspGWI	ACGGA	1 cut(s)	665
TspRI	CASTG	1 cut(s)	549
Van91I	CCANNNNNTGG	1 cut(s)	577
Vha464I	CTTAAG	1 cut(s)	1151
VpaK11BI	GGWCC	2 cut(s)	55, 776
XagI	CCTNNNNNAGG	1 cut(s)	480
XapI	RAATTY	5 cut(s)	4, 440, 991, 1126, 1139
XbaI	TCTAGA	1 cut(s)	895
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1198
XhoI	CTCGAG	1 cut(s)	674
XmiI	GTMKAC	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	453
XspI	CTAG	3 cut(s)	26, 896, 1197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.