Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0009647

Physical Location & Seq

Genomic Coordinates Reverse (-)

19363545 .. 19366279

Gene Structure 2735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1116500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGAGCTACGACAGTTGGTCACGACAGTGTATATCTATGAGTTATGCCAGTTGGTCATGGCAGTCAGAGCACTGGAATATAGAAGAAGGGAATAAGCTCAGTCCTTTCACTTTGGGTCAAAAGTTGGGCTTCCACGAGTTATTTTCTTTGAAGATTTGGAGAGCATCACTGGCAGAGCTAGTTGGCACGGCAGTGCTTGTTTTTGCTATAGACACAATAGTGATCTCCTCCTATGAGACCAAAACCACCGTACCAAACCTCATCATGGCAATCCTCATTTCCATCACAGTCGCAATTCTTCTCCTCGCCACCAATCCCATTTCCGGTGGTCACATCAACCCCGTTGTAACCTTATCCGCGGCACTTCTCGGCCTCATCTCCCTCTCACGCGCTGTCGTCTACATCTTTAGCCAATGCGTCGGGGCGGTACTAGGTGCCCTAGCACTCAAGGCAGTGGTAGACAACAGCATTGAAGGAACATTTTCACTTGGAGGTTGCACCCTCAGTGTCATTGCCCCAGGCCCACAAGGGCCGATCATAATGGGCATTGAGACCACCCAAGCCCTTTGGCTTGAGATAATTTGCACGTTTGTGTTTCTCTTTGCTTCAATTTGGATAGCATTTGACCACCGCCAAGCCCATGCTTTGGGCCGAGTTGTAGTCTTCTCTATCGTCGGGATAGTTGCGGGCCTCCTTGTTTTTATCTCAACCACCGTTACCGCCGCAAAGGGGTATGCCGGAGTAGGGATGAACCCTGCTAGATGTTTCGGCCCCGCACTTATTCGCGGAGGCCGCCTCTGGAACGGGCATTGGGTATTTTGGGTTGGTCCCATTGTTGCTTGCGTGACATTTTATTCGTACATTAAGATCATTCCACGCCAAGGCTTCAAGTATGATACTTTCAACATTGTGAAAACGCTTTCTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042221 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04962 ko04976 map04962 map04976

Pfam Domains

Protein Families

MIP

Protein Analysis

310

Amino Acids

33.46

Weight (kDa)

8.91

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	48 - 280	3.5e-40	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009647)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02190 FvH4_2g02190 FvH4_2g02190
malus_domestica	MD10G1116500.v1.1
prunus_persica	Prupe.8G159000_v2.0.a1
pyrus_communis	pycom10g10120
rosa_chinensis	RchiOBHm_Chr6g0245741 RchiOBHm_Chr6g0245821 RchiOBHm_Chr6g0245841 RchiOBHm_Chr6g0245861
rosa_laevigata	RLG00000015294
rosa_multiflora	Rmu_sc0008277.1_g000009
rosa_roxburghii	Rroxscaffold_7G00215130
rosa_rugosa	Rorug05G0515900 Rorug05G0516100
rosa_samantha	Rh6AG030800 Rh6AG031100 Rh6BG027600 Rh6CG027000 Rh6DG026300
rosa_wichuraiana	Rw6G002590 Rw6G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	434
AccB7I	CCANNNNNTGG	1 cut(s)	646
AccI	GTMKAC	2 cut(s)	399, 459
AccII	CGCG	3 cut(s)	359, 390, 786
AfaI	GTAC	3 cut(s)	252, 429, 860
AfiI	CCNNNNNNNGG	6 cut(s)	265, 323, 646, 729, 744, 881
AgsI	TTSAA	5 cut(s)	151, 473, 609, 889, 904
AhdI	GACNNNNNGTC	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	517
AleI	CACNNNNGTG	4 cut(s)	25, 191, 218, 590
AluBI	AGCT	3 cut(s)	6, 97, 178
AluI	AGCT	3 cut(s)	6, 97, 178
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	2 cut(s)	230, 545
AoxI	GGCC	7 cut(s)	370, 520, 530, 649, 688, 769, 790
ArsI	GACNNNNNNTTYG	2 cut(s)	838, 870
Asp700I	GAANNNNTTC	1 cut(s)	481
AspLEI	GCGC	1 cut(s)	392
AspS9I	GGNCC	6 cut(s)	521, 530, 649, 688, 770, 827
AvaII	GGWCC	1 cut(s)	827
BaeGI	GKGCMC	1 cut(s)	439
BaeI	ACNNNNGTAYC	2 cut(s)	234, 267
BanI	GGYRCC	1 cut(s)	434
BauI	CACGAG	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	655
Bbv12I	GWGCWC	1 cut(s)	72
BccI	CCATC	1 cut(s)	290
BceAI	ACGGC	1 cut(s)	204
BciT130I	CCWGG	1 cut(s)	519
BcoDI	GTCTC	2 cut(s)	230, 545
BfaI	CTAG	4 cut(s)	179, 431, 440, 759
BfmI	CTRYAG	1 cut(s)	207
BisI	GCNGC	3 cut(s)	360, 723, 793
BlsI	GCNGC	3 cut(s)	361, 724, 794
Bme1390I	CCNGG	1 cut(s)	519
Bme18I	GGWCC	1 cut(s)	827
BmeRI	GACNNNNNGTC	1 cut(s)	16
BmgT120I	GGNCC	6 cut(s)	521, 530, 649, 688, 770, 827
BmiI	GGNNCC	3 cut(s)	436, 772, 829
BmrFI	CCNGG	1 cut(s)	519
BmsI	GCATC	1 cut(s)	173
BpiI	GAAGAC	1 cut(s)	655
BplI	GAGNNNNNCTC	2 cut(s)	780, 812
BpuEI	CTTGAG	2 cut(s)	431, 593
BsaI	GGTCTC	2 cut(s)	230, 545
BsaJI	CCNNGG	3 cut(s)	357, 517, 880
BsaWI	WCCGGW	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	6 cut(s)	265, 323, 646, 729, 744, 881
Bse1I	ACTGG	3 cut(s)	48, 77, 174
Bse3DI	GCAATG	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	3 cut(s)	357, 517, 880
BseGI	GGATG	1 cut(s)	753
BseLI	CCNNNNNNNGG	6 cut(s)	265, 323, 646, 729, 744, 881
BseMI	GCAATG	1 cut(s)	510
BseMII	CTCAG	2 cut(s)	112, 517
BseNI	ACTGG	3 cut(s)	48, 77, 174
BseRI	GAGGAG	2 cut(s)	217, 293
BseSI	GKGCMC	1 cut(s)	439
Bsh1236I	CGCG	3 cut(s)	359, 390, 786
BshFI	GGCC	7 cut(s)	372, 522, 532, 651, 690, 771, 792
BshNI	GGYRCC	1 cut(s)	434
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	324, 738
BslFI	GGGAC	1 cut(s)	813
BslI	CCNNNNNNNGG	6 cut(s)	265, 323, 646, 729, 744, 881
BsmAI	GTCTC	2 cut(s)	230, 545
BsmFI	GGGAC	1 cut(s)	813
BsnI	GGCC	7 cut(s)	372, 522, 532, 651, 690, 771, 792
Bso31I	GGTCTC	2 cut(s)	230, 545
Bsp1286I	GDGCHC	2 cut(s)	72, 439
Bsp143I	GATC	3 cut(s)	222, 534, 867
BspANI	GGCC	7 cut(s)	372, 522, 532, 651, 690, 771, 792
BspCNI	CTCAG	2 cut(s)	111, 516
BspFNI	CGCG	3 cut(s)	359, 390, 786
BspLI	GGNNCC	3 cut(s)	436, 772, 829
BspT107I	GGYRCC	1 cut(s)	434
BspTNI	GGTCTC	2 cut(s)	230, 545
BsrDI	GCAATG	1 cut(s)	510
BsrI	ACTGG	3 cut(s)	48, 77, 174
BssECI	CCNNGG	3 cut(s)	357, 517, 880
BssMI	GATC	3 cut(s)	222, 534, 867
BssSI	CACGAG	1 cut(s)	134
BssT1I	CCWWGG	1 cut(s)	880
Bst2BI	CACGAG	1 cut(s)	134
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	5 cut(s)	14, 27, 250, 289, 715
BstC8I	GCNNGC	2 cut(s)	688, 841
BstDEI	CTNAG	3 cut(s)	98, 503, 924
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	1 cut(s)	753
BstFNI	CGCG	3 cut(s)	359, 390, 786
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	3 cut(s)	225, 537, 870
BstMAI	GTCTC	2 cut(s)	230, 545
BstMBI	GATC	3 cut(s)	222, 534, 867
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 170, 449, 792
BstNI	CCWGG	1 cut(s)	519
BstSCI	CCNGG	1 cut(s)	517
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	439
BstUI	CGCG	3 cut(s)	359, 390, 786
BstV2I	GAAGAC	1 cut(s)	655
BsuRI	GGCC	7 cut(s)	372, 522, 532, 651, 690, 771, 792
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	753
BtsI	GCAGTG	2 cut(s)	198, 459
BtsIMutI	CAGTG	6 cut(s)	32, 70, 167, 198, 459, 511
Cac8I	GCNNGC	2 cut(s)	688, 841
CfoI	GCGC	1 cut(s)	392
Cfr13I	GGNCC	6 cut(s)	521, 530, 649, 688, 770, 827
Cfr42I	CCGCGG	1 cut(s)	360
CseI	GACGC	1 cut(s)	406
Csp6I	GTAC	3 cut(s)	251, 428, 859
CviAII	CATG	3 cut(s)	57, 265, 641
CviQI	GTAC	3 cut(s)	251, 428, 859
DdeI	CTNAG	3 cut(s)	98, 503, 924
DpnI	GATC	3 cut(s)	224, 536, 869
DpnII	GATC	3 cut(s)	222, 534, 867
DriI	GACNNNNNGTC	1 cut(s)	16
Eam1105I	GACNNNNNGTC	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	880
Eco31I	GGTCTC	2 cut(s)	230, 545
Eco47I	GGWCC	1 cut(s)	827
EcoRII	CCWGG	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	880
ErhI	CCWWGG	1 cut(s)	880
FaeI	CATG	3 cut(s)	60, 268, 644
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FaqI	GGGAC	1 cut(s)	813
FatI	CATG	3 cut(s)	56, 264, 640
FauI	CCCGC	2 cut(s)	679, 781
FblI	GTMKAC	2 cut(s)	399, 459
Fnu4HI	GCNGC	3 cut(s)	360, 723, 793
FokI	GGATG	1 cut(s)	760
Fsp4HI	GCNGC	3 cut(s)	360, 723, 793
FspBI	CTAG	4 cut(s)	179, 431, 440, 759
GlaI	GCGC	1 cut(s)	391
GluI	GCNGC	3 cut(s)	360, 723, 793
HaeIII	GGCC	7 cut(s)	372, 522, 532, 651, 690, 771, 792
HapII	CCGG	2 cut(s)	324, 738
HgaI	GACGC	1 cut(s)	406
HhaI	GCGC	1 cut(s)	392
Hin1II	CATG	3 cut(s)	60, 268, 644
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HpaII	CCGG	2 cut(s)	324, 738
Hpy166II	GTNNAC	2 cut(s)	400, 460
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	3 cut(s)	21, 676, 799
Hpy8I	GTNNAC	2 cut(s)	400, 460
Hpy99I	CGWCG	2 cut(s)	422, 677
HpyAV	CCTTC	2 cut(s)	80, 467
HpyCH4III	ACNGT	5 cut(s)	14, 27, 250, 289, 715
HpyCH4IV	ACGT	1 cut(s)	587
HpyCH4V	TGCA	2 cut(s)	498, 585
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 170, 449, 792
HpyF3I	CTNAG	3 cut(s)	98, 503, 924
HpySE526I	ACGT	1 cut(s)	587
Hsp92II	CATG	3 cut(s)	60, 268, 644
HspAI	GCGC	1 cut(s)	390
KspI	CCGCGG	1 cut(s)	360
Kzo9I	GATC	3 cut(s)	222, 534, 867
LpnPI	CCDG	9 cut(s)	58, 61, 155, 337, 504, 531, 751, 768, 784
LweI	GCATC	1 cut(s)	173
MaeI	CTAG	4 cut(s)	179, 431, 440, 759
MaeII	ACGT	1 cut(s)	587
MaeIII	GTNAC	5 cut(s)	18, 329, 346, 715, 844
MalI	GATC	3 cut(s)	224, 536, 869
MboI	GATC	3 cut(s)	222, 534, 867
MboII	GAAGA	4 cut(s)	95, 163, 290, 655
MhlI	GDGCHC	2 cut(s)	72, 439
MluCI	AATT	3 cut(s)	294, 579, 609
MroXI	GAANNNNTTC	1 cut(s)	481
MseI	TTAA	1 cut(s)	864
MslI	CAYNNNNRTG	4 cut(s)	25, 191, 218, 590
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	2 cut(s)	324, 738
MspR9I	CCNGG	1 cut(s)	519
MvaI	CCWGG	1 cut(s)	519
MvnI	CGCG	3 cut(s)	359, 390, 786
MwoI	GCNNNNNNNGC	4 cut(s)	67, 170, 449, 792
NdeII	GATC	3 cut(s)	222, 534, 867
NlaIII	CATG	3 cut(s)	60, 268, 644
NlaIV	GGNNCC	3 cut(s)	436, 772, 829
NmeAIII	GCCGAG	2 cut(s)	348, 677
NmuCI	GTSAC	3 cut(s)	18, 329, 844
OliI	CACNNNNGTG	4 cut(s)	25, 191, 218, 590
PdmI	GAANNNNTTC	1 cut(s)	481
PflMI	CCANNNNNTGG	1 cut(s)	646
PkrI	GCNGC	3 cut(s)	361, 724, 794
Psp6I	CCWGG	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	3 cut(s)	436, 772, 829
PspPI	GGNCC	6 cut(s)	521, 530, 649, 688, 770, 827
RsaI	GTAC	3 cut(s)	252, 429, 860
RsaNI	GTAC	3 cut(s)	251, 428, 859
RseI	CAYNNNNRTG	4 cut(s)	25, 191, 218, 590
SacII	CCGCGG	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	864
SatI	GCNGC	3 cut(s)	360, 723, 793
Sau3AI	GATC	3 cut(s)	222, 534, 867
Sau96I	GGNCC	6 cut(s)	521, 530, 649, 688, 770, 827
ScrFI	CCNGG	1 cut(s)	519
SduI	GDGCHC	2 cut(s)	72, 439
SetI	ASST	8 cut(s)	8, 99, 180, 261, 353, 436, 496, 590
SfaNI	GCATC	1 cut(s)	173
SfcI	CTRYAG	1 cut(s)	207
Sfr303I	CCGCGG	1 cut(s)	360
SgrBI	CCGCGG	1 cut(s)	360
SinI	GGWCC	1 cut(s)	827
SmiMI	CAYNNNNRTG	4 cut(s)	25, 191, 218, 590
SmlI	CTYRAG	2 cut(s)	446, 572
SmoI	CTYRAG	2 cut(s)	446, 572
Sse9I	AATT	3 cut(s)	294, 579, 609
SspMI	CTAG	4 cut(s)	179, 431, 440, 759
StyD4I	CCNGG	1 cut(s)	517
StyI	CCWWGG	1 cut(s)	880
TaaI	ACNGT	5 cut(s)	14, 27, 250, 289, 715
TaiI	ACGT	1 cut(s)	590
TasI	AATT	3 cut(s)	294, 579, 609
TauI	GCSGC	3 cut(s)	362, 725, 795
Tru1I	TTAA	1 cut(s)	864
Tru9I	TTAA	1 cut(s)	864
TscAI	CASTG	6 cut(s)	32, 77, 174, 198, 459, 511
TseFI	GTSAC	3 cut(s)	18, 329, 844
Tsp45I	GTSAC	3 cut(s)	18, 329, 844
TspDTI	ATGAA	1 cut(s)	764
TspRI	CASTG	6 cut(s)	32, 77, 174, 198, 459, 511
Van91I	CCANNNNNTGG	1 cut(s)	646
VpaK11BI	GGWCC	1 cut(s)	827
XmiI	GTMKAC	2 cut(s)	399, 459
XmnI	GAANNNNTTC	1 cut(s)	481
XspI	CTAG	4 cut(s)	179, 431, 440, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.