Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009647

Physical Location & Seq

Genomic Coordinates Forward (+)

70062703 .. 70065132

Gene Structure 2430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0516100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTCAGGGCCGTTTCGTTCACTCGTTTTGAACAGAAGATTCGGCGATGAGACTCTTCGCGTTCTGGAATTAATTTTGGTTTCCAAGGACGTGAAGTCGTCGGTGGAAGTCCGATCCGGCTTGAGGCAGTTCATGAGGTCTGAATCCCTCTCCGTTCTGAAAGAAATTTCTGAGAAAAACGTCGAGGAGAAGCTTCTGGTTCTCGAATTTCTCGTTCGCACTTTCGCGCTCGTCGGCGATGTTGAGAGTTGCTTGGCTTTGAGATATGAGGCTTTGCTTTTGCGAGATCTCAAGTCTAGAACTCACCAATGGCTAGAGGTACCATATCTGGAATGGCTGAACTTTGCTCAGCAGTCACTGGACAATGGTTTCTATTCAATTGCAGCAAAGGCTTGTGAAAATGCATTGTTATCCCTTAAGGGGAAGTCTGCTGAACAGCCTACACCAGATGGAGTTTGCATTGAGAGGATATCTACTGAAGACCCCAAAACAGATGAAGTCTTTGAAACTGAACAAGTTATTCAAAAGATAAAGAAACTCAAGGAATGTGCCATGGCATCTGCTTCTTCCCACTCAGTTCAAACGCAAACGGCAGACTACATGAAAAAGAGACTAAAACAGAAGAGTATGGTGTGCTCTCCAGTTCTCAAGAAGACAACATTTGTAGCGAGCACTTTGTTCAGAAATGGAATCAAAAAGCGGAATCAGCGAAAATTGAATGAAAGCAGAAGCTTATTGGGGTGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042221 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04962 ko04976 map04962 map04976

Pfam Domains

Protein Families

MIP

Protein Analysis

249

Amino Acids

28.34

Weight (kDa)

9.31

Isoelectric Point (pI)

53.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009647)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02190 FvH4_2g02190 FvH4_2g02190
malus_domestica	MD10G1116500.v1.1
prunus_persica	Prupe.8G159000_v2.0.a1
pyrus_communis	pycom10g10120
rosa_chinensis	RchiOBHm_Chr6g0245741 RchiOBHm_Chr6g0245821 RchiOBHm_Chr6g0245841 RchiOBHm_Chr6g0245861
rosa_laevigata	RLG00000015294
rosa_multiflora	Rmu_sc0008277.1_g000009
rosa_roxburghii	Rroxscaffold_7G00215130
rosa_rugosa	Rorug05G0515900 Rorug05G0516100
rosa_samantha	Rh6AG030800 Rh6AG031100 Rh6BG027600 Rh6CG027000 Rh6DG026300
rosa_wichuraiana	Rw6G002590 Rw6G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	319
AccB1I	GGYRCC	1 cut(s)	319
AccII	CGCG	2 cut(s)	60, 227
AciI	CCGC	1 cut(s)	700
AclWI	GGATC	1 cut(s)	108
AcsI	RAATTY	2 cut(s)	165, 206
AcuI	CTGAAG	1 cut(s)	498
AfaI	GTAC	1 cut(s)	321
AfiI	CCNNNNNNNGG	2 cut(s)	123, 420
AflII	CTTAAG	1 cut(s)	416
AgsI	TTSAA	6 cut(s)	31, 378, 506, 524, 581, 718
AhdI	GACNNNNNGTC	1 cut(s)	94
AjiI	CACGTC	1 cut(s)	91
AluBI	AGCT	2 cut(s)	193, 732
AluI	AGCT	2 cut(s)	193, 732
Alw21I	GWGCWC	2 cut(s)	638, 674
Alw26I	GTCTC	2 cut(s)	44, 604
AlwI	GGATC	1 cut(s)	108
AlwNI	CAGNNNCTG	1 cut(s)	358
AoxI	GGCC	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	383
ApoI	RAATTY	2 cut(s)	165, 206
AseI	ATTAAT	1 cut(s)	71
Asp718I	GGTACC	1 cut(s)	319
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	296
BanI	GGYRCC	1 cut(s)	319
BbsI	GAAGAC	2 cut(s)	486, 659
Bbv12I	GWGCWC	2 cut(s)	638, 674
BbvI	GCAGC	1 cut(s)	395
BccI	CCATC	1 cut(s)	443
BceAI	ACGGC	1 cut(s)	606
BcoDI	GTCTC	2 cut(s)	44, 604
BfaI	CTAG	2 cut(s)	297, 314
BfrI	CTTAAG	1 cut(s)	416
BglII	AGATCT	1 cut(s)	286
BisI	GCNGC	1 cut(s)	384
BlpI	GCTNAGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	385
BmeRI	GACNNNNNGTC	1 cut(s)	94
BmgBI	CACGTC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	8
BmiI	GGNNCC	1 cut(s)	321
BmsI	GCATC	1 cut(s)	566
BpiI	GAAGAC	2 cut(s)	486, 659
BpmI	CTGGAG	1 cut(s)	624
Bpu1102I	GCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	4 cut(s)	142, 275, 524, 632
BsaJI	CCNNGG	2 cut(s)	84, 552
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 420
Bse1I	ACTGG	2 cut(s)	363, 641
BseDI	CCNNGG	2 cut(s)	84, 552
BseLI	CCNNNNNNNGG	2 cut(s)	123, 420
BseMII	CTCAG	3 cut(s)	162, 362, 588
BseNI	ACTGG	2 cut(s)	363, 641
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	1 cut(s)	395
Bsh1236I	CGCG	2 cut(s)	60, 227
BshFI	GGCC	1 cut(s)	10
BshNI	GGYRCC	1 cut(s)	319
BsiHKAI	GWGCWC	2 cut(s)	638, 674
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	123, 420
BsmAI	GTCTC	2 cut(s)	44, 604
BsnI	GGCC	1 cut(s)	10
Bsp1286I	GDGCHC	2 cut(s)	638, 674
Bsp143I	GATC	2 cut(s)	113, 286
Bsp1720I	GCTNAGC	1 cut(s)	348
Bsp19I	CCATGG	1 cut(s)	552
BspACI	CCGC	1 cut(s)	700
BspANI	GGCC	1 cut(s)	10
BspCNI	CTCAG	3 cut(s)	163, 361, 587
BspFNI	CGCG	2 cut(s)	60, 227
BspHI	TCATGA	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	321
BspPI	GGATC	1 cut(s)	108
BspT107I	GGYRCC	1 cut(s)	319
BspTI	CTTAAG	1 cut(s)	416
BsrI	ACTGG	2 cut(s)	363, 641
BssECI	CCNNGG	2 cut(s)	84, 552
BssMI	GATC	2 cut(s)	113, 286
BssT1I	CCWWGG	2 cut(s)	84, 552
Bst6I	CTCTTC	2 cut(s)	60, 617
BstAFI	CTTAAG	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	670
BstDEI	CTNAG	3 cut(s)	171, 348, 574
BstDSI	CCRYGG	1 cut(s)	552
BstFNI	CGCG	2 cut(s)	60, 227
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	2 cut(s)	116, 289
BstMAI	GTCTC	2 cut(s)	44, 604
BstMBI	GATC	2 cut(s)	113, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	389, 706
BstUI	CGCG	2 cut(s)	60, 227
BstV1I	GCAGC	1 cut(s)	395
BstV2I	GAAGAC	2 cut(s)	486, 659
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	10
BtgI	CCRYGG	1 cut(s)	552
BtgZI	GCGATG	2 cut(s)	60, 252
BtrI	CACGTC	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	356
Cac8I	GCNNGC	1 cut(s)	670
CaiI	CAGNNNCTG	1 cut(s)	358
CciI	TCATGA	1 cut(s)	132
CfoI	GCGC	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	8
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	3 cut(s)	133, 553, 601
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	3 cut(s)	171, 348, 574
DpnI	GATC	2 cut(s)	115, 288
DpnII	GATC	2 cut(s)	113, 286
DriI	GACNNNNNGTC	1 cut(s)	94
Eam1104I	CTCTTC	2 cut(s)	60, 617
Eam1105I	GACNNNNNGTC	1 cut(s)	94
EarI	CTCTTC	2 cut(s)	60, 617
Eco130I	CCWWGG	2 cut(s)	84, 552
Eco32I	GATATC	1 cut(s)	471
Eco57I	CTGAAG	1 cut(s)	498
EcoRV	GATATC	1 cut(s)	471
EcoT14I	CCWWGG	2 cut(s)	84, 552
EcoT22I	ATGCAT	1 cut(s)	406
ErhI	CCWWGG	2 cut(s)	84, 552
FaeI	CATG	3 cut(s)	136, 556, 604
FaiI	YATR	6 cut(s)	134, 267, 325, 554, 602, 629
FatI	CATG	3 cut(s)	132, 552, 600
Fnu4HI	GCNGC	1 cut(s)	384
Fsp4HI	GCNGC	1 cut(s)	384
FspBI	CTAG	2 cut(s)	297, 314
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	1 cut(s)	384
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	1 cut(s)	117
HhaI	GCGC	1 cut(s)	229
Hin1II	CATG	3 cut(s)	136, 556, 604
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HindIII	AAGCTT	2 cut(s)	191, 730
HinfI	GANTC	5 cut(s)	39, 52, 143, 690, 703
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	5 cut(s)	113, 142, 159, 172, 683
Hpy188III	TCNNGA	6 cut(s)	65, 133, 203, 297, 329, 649
Hpy8I	GTNNAC	1 cut(s)	20
Hpy99I	CGWCG	3 cut(s)	103, 185, 236
HpyCH4IV	ACGT	2 cut(s)	90, 180
HpyCH4V	TGCA	3 cut(s)	383, 404, 459
HpyF10VI	GCNNNNNNNGC	2 cut(s)	389, 706
HpyF3I	CTNAG	3 cut(s)	171, 348, 574
HpySE526I	ACGT	2 cut(s)	90, 180
Hsp92II	CATG	3 cut(s)	136, 556, 604
HspAI	GCGC	1 cut(s)	227
KpnI	GGTACC	1 cut(s)	323
Kzo9I	GATC	2 cut(s)	113, 286
LpnPI	CCDG	7 cut(s)	50, 130, 182, 314, 344, 459, 654
Lsp1109I	GCAGC	1 cut(s)	395
LweI	GCATC	1 cut(s)	566
MaeI	CTAG	2 cut(s)	297, 314
MaeII	ACGT	2 cut(s)	90, 180
MaeIII	GTNAC	1 cut(s)	354
MalI	GATC	2 cut(s)	115, 288
MboI	GATC	2 cut(s)	113, 286
MboII	GAAGA	6 cut(s)	47, 48, 491, 558, 634, 664
MfeI	CAATTG	1 cut(s)	378
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	2 cut(s)	638, 674
MluCI	AATT	6 cut(s)	68, 72, 165, 206, 378, 713
MlyI	GAGTC	1 cut(s)	46
MnlI	CCTC	7 cut(s)	117, 129, 158, 178, 262, 310, 459
Mph1103I	ATGCAT	1 cut(s)	406
MseI	TTAA	2 cut(s)	71, 417
MspCI	CTTAAG	1 cut(s)	416
MspI	CCGG	1 cut(s)	117
MunI	CAATTG	1 cut(s)	378
MvnI	CGCG	2 cut(s)	60, 227
MwoI	GCNNNNNNNGC	2 cut(s)	389, 706
NcoI	CCATGG	1 cut(s)	552
NdeII	GATC	2 cut(s)	113, 286
NlaIII	CATG	3 cut(s)	136, 556, 604
NlaIV	GGNNCC	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	354
NsiI	ATGCAT	1 cut(s)	406
PagI	TCATGA	1 cut(s)	132
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	4 cut(s)	39, 143, 690, 703
PkrI	GCNGC	1 cut(s)	385
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	8
PstNI	CAGNNNCTG	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	286
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	71, 417
SatI	GCNGC	1 cut(s)	384
Sau3AI	GATC	2 cut(s)	113, 286
Sau96I	GGNCC	1 cut(s)	8
SchI	GAGTC	1 cut(s)	46
SduI	GDGCHC	2 cut(s)	638, 674
SetI	ASST	6 cut(s)	93, 140, 183, 195, 321, 734
SfaNI	GCATC	1 cut(s)	566
SmlI	CTYRAG	5 cut(s)	121, 290, 416, 539, 647
SmoI	CTYRAG	5 cut(s)	121, 290, 416, 539, 647
Sse9I	AATT	6 cut(s)	68, 72, 165, 206, 378, 713
SsiI	CCGC	1 cut(s)	700
SspMI	CTAG	2 cut(s)	297, 314
StyI	CCWWGG	2 cut(s)	84, 552
TaiI	ACGT	2 cut(s)	93, 183
TaqI	TCGA	2 cut(s)	183, 204
TasI	AATT	6 cut(s)	68, 72, 165, 206, 378, 713
TfiI	GAWTC	4 cut(s)	39, 143, 690, 703
Tru1I	TTAA	2 cut(s)	71, 417
Tru9I	TTAA	2 cut(s)	71, 417
TscAI	CASTG	1 cut(s)	363
TseFI	GTSAC	1 cut(s)	354
TseI	GCWGC	1 cut(s)	383
Tsp45I	GTSAC	1 cut(s)	354
TspDTI	ATGAA	4 cut(s)	121, 510, 617, 735
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	363
Vha464I	CTTAAG	1 cut(s)	416
VspI	ATTAAT	1 cut(s)	71
XapI	RAATTY	2 cut(s)	165, 206
XbaI	TCTAGA	1 cut(s)	296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	330
XspI	CTAG	2 cut(s)	297, 314
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.