Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009647

Physical Location & Seq

Genomic Coordinates Reverse (-)

16838113 .. 16840351

Gene Structure 2239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G159000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCTGAAAATAGGCCGGTGGTAGAGGATGATAGAGTCCATCCTTTTTCTTCCACACCAATGTCAGAGCATTGGAATGTTGAGGAAGTGAAGAAGTCCAGTCCCTCCACTTTGAGTAAGAAGTTGGGATTGCACGAGCTGTTTTCTTTGAAGGTTTGGAGAGCATCTCTAGCAGAGCTAGTTGGCTCGGCAGTACTTGTTTTCGCTATAGACACAATAGTTATCTCCTCCTATGAGACTAGAACCACAACACCAAACCTTGTCATGGCGATCCTCATTTCCATCACAGTTGCAATTCTCCTACTCGCCACCAATCCCATCTCCGGCGGCCACATCAATCCCGTTGTCACCTTATCCGCAGTGTTCGTCGGCCTCATATCCCTCTCACGTGCCGCTGTCTACATCTTGAGCCAGTGCGCGGGGGCGGTACTAGGCGCACTAGCCCTGAAGGCTGTGGTAAACAGCAGCATTGAAGAAACGTTCTCACTTGGAGGTTGCACTCTCACTGTCATTGCCCCAGGCCCACATGGGCCAATCATTATTGGCATTGAGACCACCCAAGCCCTTTGGCTTGAGATCATATGCACTTTTGTGTTTCTCTTTGCTTCGATTTGGATGGCATTTGACCATCGCCAAGCCCATGCTGTGGGCCGAGTTGTAGTCTTTTCTATCGTTGGAACAGTTGTGGGCCTCCTTGTGTTTATCTCAACCACCGTTACAGCTGTAAAGGGCTATGCCGGGGTTGGAATGAACCCGGCGCGATGCTTGGGCCCCGCATTGATTCGCGGGGGCCACCTGTGGAATGGGCATTGGGTGTTTTGGGTCGGGCCCATTATTGCTTGCGTGACATTTTATTTGTACATAAAGATCATTCCACGTCAGCATTTCCACATGGATGGCTACACGCAAGATACAGTCAATATCGTAAAGACTCTTCCCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042221 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04962 ko04976 map04962 map04976

Pfam Domains

Protein Families

MIP

Protein Analysis

315

Amino Acids

33.85

Weight (kDa)

7.74

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009647)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02190 FvH4_2g02190 FvH4_2g02190
malus_domestica	MD10G1116500.v1.1
prunus_persica	Prupe.8G159000_v2.0.a1
pyrus_communis	pycom10g10120
rosa_chinensis	RchiOBHm_Chr6g0245741 RchiOBHm_Chr6g0245821 RchiOBHm_Chr6g0245841 RchiOBHm_Chr6g0245861
rosa_laevigata	RLG00000015294
rosa_multiflora	Rmu_sc0008277.1_g000009
rosa_roxburghii	Rroxscaffold_7G00215130
rosa_rugosa	Rorug05G0515900 Rorug05G0516100
rosa_samantha	Rh6AG030800 Rh6AG031100 Rh6BG027600 Rh6CG027000 Rh6DG026300
rosa_wichuraiana	Rw6G002590 Rw6G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	646
AccI	GTMKAC	1 cut(s)	399
AccII	CGCG	3 cut(s)	419, 760, 786
AciI	CCGC	7 cut(s)	327, 357, 393, 419, 425, 774, 786
AclI	AACGTT	1 cut(s)	479
AclWI	GGATC	1 cut(s)	265
AcoI	YGGCCR	1 cut(s)	328
AcuI	CTGAAG	1 cut(s)	467
AcvI	CACGTG	1 cut(s)	389
AfaI	GTAC	3 cut(s)	195, 429, 860
AfiI	CCNNNNNNNGG	4 cut(s)	265, 323, 418, 646
AgsI	TTSAA	2 cut(s)	151, 473
AjiI	CACGTC	1 cut(s)	878
AjnI	CCWGG	1 cut(s)	517
AleI	CACNNNNGTG	1 cut(s)	590
AluBI	AGCT	3 cut(s)	139, 178, 722
AluI	AGCT	3 cut(s)	139, 178, 722
Alw26I	GTCTC	2 cut(s)	230, 545
AlwI	GGATC	1 cut(s)	265
ApaI	GGGCCC	2 cut(s)	773, 831
ApeKI	GCWGC	1 cut(s)	465
ArsI	GACNNNNNNTTYG	2 cut(s)	838, 870
AspLEI	GCGC	3 cut(s)	419, 437, 760
AspS9I	GGNCC	9 cut(s)	521, 530, 649, 688, 769, 770, 790, 827, 828
AsuC2I	CCSGG	2 cut(s)	739, 755
AsuHPI	GGTGA	1 cut(s)	340
BaeGI	GKGCMC	2 cut(s)	773, 831
BanII	GRGCYC	2 cut(s)	773, 831
BarI	GAAGNNNNNNTAC	1 cut(s)	918
BauI	CACGAG	1 cut(s)	134
BbrPI	CACGTG	1 cut(s)	389
BbvI	GCAGC	1 cut(s)	477
BccI	CCATC	6 cut(s)	48, 290, 326, 610, 636, 890
BciT130I	CCWGG	1 cut(s)	519
BcnI	CCSGG	2 cut(s)	739, 755
BcoDI	GTCTC	2 cut(s)	230, 545
BfaI	CTAG	5 cut(s)	170, 179, 240, 431, 440
BfmI	CTRYAG	1 cut(s)	207
BglI	GCCNNNNNGGC	1 cut(s)	449
BisI	GCNGC	3 cut(s)	328, 393, 466
BlsI	GCNGC	3 cut(s)	329, 394, 467
BmcAI	AGTACT	1 cut(s)	195
Bme1390I	CCNGG	3 cut(s)	519, 739, 755
BmgBI	CACGTC	1 cut(s)	878
BmgT120I	GGNCC	9 cut(s)	521, 530, 649, 688, 769, 770, 790, 827, 828
BmiI	GGNNCC	4 cut(s)	771, 772, 791, 829
BmrFI	CCNGG	3 cut(s)	519, 739, 755
BmrI	ACTGGG	1 cut(s)	934
BmsI	GCATC	2 cut(s)	173, 752
BmuI	ACTGGG	1 cut(s)	934
BplI	GAGNNNNNCTC	2 cut(s)	151, 183
BpuEI	CTTGAG	2 cut(s)	427, 593
BpuMI	CCSGG	2 cut(s)	739, 755
BsaAI	YACGTR	1 cut(s)	389
BsaI	GGTCTC	1 cut(s)	545
BsaJI	CCNNGG	2 cut(s)	517, 738
Bsc4I	CCNNNNNNNGG	4 cut(s)	265, 323, 418, 646
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	3 cut(s)	99, 412, 940
Bse3DI	GCAATG	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	2 cut(s)	517, 738
BseGI	GGATG	4 cut(s)	34, 40, 621, 901
BseLI	CCNNNNNNNGG	4 cut(s)	265, 323, 418, 646
BseMI	GCAATG	1 cut(s)	510
BseNI	ACTGG	3 cut(s)	99, 412, 940
BseRI	GAGGAG	1 cut(s)	217
BseSI	GKGCMC	2 cut(s)	773, 831
BseXI	GCAGC	1 cut(s)	477
Bsh1236I	CGCG	3 cut(s)	419, 760, 786
BsiSI	CCGG	4 cut(s)	17, 324, 738, 755
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	4 cut(s)	265, 323, 418, 646
BsmAI	GTCTC	2 cut(s)	230, 545
BsmFI	GGGAC	1 cut(s)	87
Bso31I	GGTCTC	1 cut(s)	545
Bsp120I	GGGCCC	2 cut(s)	769, 827
Bsp1286I	GDGCHC	2 cut(s)	773, 831
Bsp1407I	TGTACA	1 cut(s)	858
Bsp143I	GATC	3 cut(s)	270, 576, 867
BspACI	CCGC	7 cut(s)	327, 357, 393, 419, 425, 774, 786
BspFNI	CGCG	3 cut(s)	419, 760, 786
BspLI	GGNNCC	4 cut(s)	771, 772, 791, 829
BspPI	GGATC	1 cut(s)	265
BspTNI	GGTCTC	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	510
BsrFI	RCCGGY	1 cut(s)	16
BsrGI	TGTACA	1 cut(s)	858
BsrI	ACTGG	3 cut(s)	99, 412, 940
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	2 cut(s)	517, 738
BssMI	GATC	3 cut(s)	270, 576, 867
BssSI	CACGAG	1 cut(s)	134
Bst2BI	CACGAG	1 cut(s)	134
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	5 cut(s)	289, 508, 682, 715, 916
Bst6I	CTCTTC	1 cut(s)	939
BstAUI	TGTACA	1 cut(s)	858
BstBAI	YACGTR	1 cut(s)	389
BstC8I	GCNNGC	1 cut(s)	841
BstF5I	GGATG	4 cut(s)	34, 40, 621, 901
BstFNI	CGCG	3 cut(s)	419, 760, 786
BstHHI	GCGC	3 cut(s)	419, 437, 760
BstKTI	GATC	3 cut(s)	273, 579, 870
BstMAI	GTCTC	2 cut(s)	230, 545
BstMBI	GATC	3 cut(s)	270, 576, 867
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 449
BstNI	CCWGG	1 cut(s)	519
BstSCI	CCNGG	3 cut(s)	517, 737, 753
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	2 cut(s)	773, 831
BstUI	CGCG	3 cut(s)	419, 760, 786
BstV1I	GCAGC	1 cut(s)	477
BstXI	CCANNNNNNTGG	1 cut(s)	896
BtgZI	GCGATG	2 cut(s)	614, 775
BtrI	CACGTC	1 cut(s)	878
BtsCI	GGATG	4 cut(s)	34, 40, 621, 901
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	3 cut(s)	366, 419, 504
Cac8I	GCNNGC	1 cut(s)	841
CfoI	GCGC	3 cut(s)	419, 437, 760
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	9 cut(s)	521, 530, 649, 688, 769, 770, 790, 827, 828
Csp6I	GTAC	3 cut(s)	194, 428, 859
CviAII	CATG	4 cut(s)	265, 527, 641, 892
CviQI	GTAC	3 cut(s)	194, 428, 859
DpnI	GATC	3 cut(s)	272, 578, 869
DpnII	GATC	3 cut(s)	270, 576, 867
EaeI	YGGCCR	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	939
EarI	CTCTTC	1 cut(s)	939
Eco24I	GRGCYC	2 cut(s)	773, 831
Eco31I	GGTCTC	1 cut(s)	545
Eco57I	CTGAAG	1 cut(s)	467
Eco72I	CACGTG	1 cut(s)	389
EcoO109I	RGGNCCY	1 cut(s)	770
EcoRII	CCWGG	1 cut(s)	517
EcoT38I	GRGCYC	2 cut(s)	773, 831
FaeI	CATG	4 cut(s)	268, 530, 644, 895
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	4 cut(s)	264, 526, 640, 891
FauI	CCCGC	3 cut(s)	412, 779, 781
FauNDI	CATATG	1 cut(s)	581
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	3 cut(s)	328, 393, 466
FokI	GGATG	4 cut(s)	27, 41, 628, 908
FriOI	GRGCYC	2 cut(s)	773, 831
Fsp4HI	GCNGC	3 cut(s)	328, 393, 466
FspBI	CTAG	5 cut(s)	170, 179, 240, 431, 440
GlaI	GCGC	3 cut(s)	418, 436, 759
GluI	GCNGC	3 cut(s)	328, 393, 466
HapII	CCGG	4 cut(s)	17, 324, 738, 755
HhaI	GCGC	3 cut(s)	419, 437, 760
Hin1II	CATG	4 cut(s)	268, 530, 644, 895
Hin6I	GCGC	3 cut(s)	417, 435, 758
HinP1I	GCGC	3 cut(s)	417, 435, 758
HinfI	GANTC	3 cut(s)	36, 781, 931
HpaII	CCGG	4 cut(s)	17, 324, 738, 755
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	2 cut(s)	400, 460
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	1 cut(s)	406
Hpy8I	GTNNAC	2 cut(s)	400, 460
Hpy99I	CGWCG	1 cut(s)	371
HpyAV	CCTTC	2 cut(s)	145, 442
HpyCH4III	ACNGT	5 cut(s)	289, 508, 682, 715, 916
HpyCH4IV	ACGT	3 cut(s)	388, 479, 877
HpyCH4V	TGCA	4 cut(s)	133, 293, 498, 585
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 449
HpySE526I	ACGT	3 cut(s)	388, 479, 877
Hsp92II	CATG	4 cut(s)	268, 530, 644, 895
HspAI	GCGC	3 cut(s)	417, 435, 758
Kzo9I	GATC	3 cut(s)	270, 576, 867
Lsp1109I	GCAGC	1 cut(s)	477
LweI	GCATC	2 cut(s)	173, 752
MaeI	CTAG	5 cut(s)	170, 179, 240, 431, 440
MaeII	ACGT	3 cut(s)	388, 479, 877
MaeIII	GTNAC	3 cut(s)	346, 715, 844
MalI	GATC	3 cut(s)	272, 578, 869
MboI	GATC	3 cut(s)	270, 576, 867
MboII	GAAGA	4 cut(s)	42, 103, 485, 926
MhlI	GDGCHC	2 cut(s)	773, 831
MluCI	AATT	1 cut(s)	294
MlyI	GAGTC	2 cut(s)	45, 925
MmeI	TCCRAC	2 cut(s)	655, 724
MnlI	CCTC	9 cut(s)	19, 76, 115, 238, 284, 383, 392, 485, 701
MslI	CAYNNNNRTG	4 cut(s)	59, 75, 590, 894
MspA1I	CMGCKG	2 cut(s)	395, 722
MspI	CCGG	4 cut(s)	17, 324, 738, 755
MspR9I	CCNGG	3 cut(s)	519, 739, 755
MvaI	CCWGG	1 cut(s)	519
MvnI	CGCG	3 cut(s)	419, 760, 786
MwoI	GCNNNNNNNGC	2 cut(s)	170, 449
NciI	CCSGG	2 cut(s)	739, 755
NdeI	CATATG	1 cut(s)	581
NdeII	GATC	3 cut(s)	270, 576, 867
NlaIII	CATG	4 cut(s)	268, 530, 644, 895
NlaIV	GGNNCC	4 cut(s)	771, 772, 791, 829
NmeAIII	GCCGAG	2 cut(s)	167, 677
NmuCI	GTSAC	2 cut(s)	346, 844
OliI	CACNNNNGTG	1 cut(s)	590
PfeI	GAWTC	1 cut(s)	781
PflMI	CCANNNNNTGG	1 cut(s)	646
PkrI	GCNGC	3 cut(s)	329, 394, 467
PleI	GAGTC	2 cut(s)	44, 925
PmaCI	CACGTG	1 cut(s)	389
PmlI	CACGTG	1 cut(s)	389
PpsI	GAGTC	2 cut(s)	44, 925
Ppu21I	YACGTR	1 cut(s)	389
Psp1406I	AACGTT	1 cut(s)	479
Psp6I	CCWGG	1 cut(s)	517
PspCI	CACGTG	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	4 cut(s)	771, 772, 791, 829
PspOMI	GGGCCC	2 cut(s)	769, 827
PspPI	GGNCC	9 cut(s)	521, 530, 649, 688, 769, 770, 790, 827, 828
PvuII	CAGCTG	1 cut(s)	722
RsaI	GTAC	3 cut(s)	195, 429, 860
RsaNI	GTAC	3 cut(s)	194, 428, 859
RseI	CAYNNNNRTG	4 cut(s)	59, 75, 590, 894
SatI	GCNGC	3 cut(s)	328, 393, 466
Sau3AI	GATC	3 cut(s)	270, 576, 867
Sau96I	GGNCC	9 cut(s)	521, 530, 649, 688, 769, 770, 790, 827, 828
ScaI	AGTACT	1 cut(s)	195
SchI	GAGTC	2 cut(s)	45, 925
ScrFI	CCNGG	3 cut(s)	519, 739, 755
SduI	GDGCHC	2 cut(s)	773, 831
SfaNI	GCATC	2 cut(s)	173, 752
SfcI	CTRYAG	1 cut(s)	207
SmiMI	CAYNNNNRTG	4 cut(s)	59, 75, 590, 894
SmlI	CTYRAG	2 cut(s)	406, 572
SmoI	CTYRAG	2 cut(s)	406, 572
Sse9I	AATT	1 cut(s)	294
SsiI	CCGC	7 cut(s)	327, 357, 393, 419, 425, 774, 786
SspMI	CTAG	5 cut(s)	170, 179, 240, 431, 440
StyD4I	CCNGG	3 cut(s)	517, 737, 753
TaaI	ACNGT	5 cut(s)	289, 508, 682, 715, 916
TaiI	ACGT	3 cut(s)	391, 482, 880
TaqI	TCGA	1 cut(s)	608
TasI	AATT	1 cut(s)	294
TatI	WGTACW	2 cut(s)	193, 858
TauI	GCSGC	2 cut(s)	330, 395
TfiI	GAWTC	1 cut(s)	781
TscAI	CASTG	3 cut(s)	366, 419, 511
TseFI	GTSAC	2 cut(s)	346, 844
TseI	GCWGC	1 cut(s)	465
Tsp45I	GTSAC	2 cut(s)	346, 844
TspDTI	ATGAA	1 cut(s)	764
TspRI	CASTG	3 cut(s)	366, 419, 511
Van91I	CCANNNNNTGG	1 cut(s)	646
XcmI	CCANNNNNNNNNTGG	1 cut(s)	800
XmiI	GTMKAC	1 cut(s)	399
XspI	CTAG	5 cut(s)	170, 179, 240, 431, 440
ZrmI	AGTACT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.