Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009647

Physical Location & Seq

Genomic Coordinates Forward (+)

1509766 .. 1510473

Gene Structure 708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22025

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGATCTCCTCCATTGAGACCAATATCTCAGCACCAAACCTTGTATTGTCAATCCTGGTAGCAATCATCGCGGCGATTCTCCTAATTGCTACCTACCCGGTTTCCGGAGGCGACATCAACCCCGTCATCACCTTTTCCGCGGCACTAGTCGGCATCATTTCCTTTTCACGAGTTGCCGTGTACATTTTCATGCAATGCGTCGGAGGAGTTCTAGGTGCCTTGGCACTCAAGGCTGTGATTAACAGCTGCCTTGAAGAAACATTCTCACTTGGAGGTTGCACCCTAACCGTGGTTTCTCCTGACCCACAAGGGCCCATCACGGTCGGGATCGGGACAGGCCAGGCCCTTTGGCTCGAGATAATATGCACATTTATTTCCCTCCTTGCGTCGATATGGATGGCGTTCGAGCACCGCCAAGCCCACTCCATGGGTAAGGTTATGGTCCTCTCTATCGTCGGAATAGTGGTGGGCATTCTTGTGTTTATCTCGACCTCTGTAACAGCTGTGAAGGGCTACGCTGGGCCTGGAATGAACCAGCTAGATGCCTCGGCCCAACACTTGTTCGTGGGGGCCACCTCTGGACCGGCCACTGGGTTTTTTGGGTCGGGCCTACTATTTCTTGCTTCGCTTTCTACTTGTACGTCAAGCTCATTCCCCGTCAACATTTCCATGTGGAGGGCTGCAAGCATGATATCTTCGACTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042221 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04962 ko04976 map04962 map04976

Pfam Domains

Protein Families

MIP

Protein Analysis

235

Amino Acids

24.21

Weight (kDa)

5.81

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	19 - 178	1.3e-17	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009647)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02190 FvH4_2g02190 FvH4_2g02190
malus_domestica	MD10G1116500.v1.1
prunus_persica	Prupe.8G159000_v2.0.a1
pyrus_communis	pycom10g10120
rosa_chinensis	RchiOBHm_Chr6g0245741 RchiOBHm_Chr6g0245821 RchiOBHm_Chr6g0245841 RchiOBHm_Chr6g0245861
rosa_laevigata	RLG00000015294
rosa_multiflora	Rmu_sc0008277.1_g000009
rosa_roxburghii	Rroxscaffold_7G00215130
rosa_rugosa	Rorug05G0515900 Rorug05G0516100
rosa_samantha	Rh6AG030800 Rh6AG031100 Rh6BG027600 Rh6CG027000 Rh6DG026300
rosa_wichuraiana	Rw6G002590 Rw6G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	215
AccB7I	CCANNNNNTGG	1 cut(s)	427
AccII	CGCG	2 cut(s)	71, 140
AccIII	TCCGGA	1 cut(s)	104
AciI	CCGC	4 cut(s)	71, 138, 140, 412
AclWI	GGATC	1 cut(s)	335
AcoI	YGGCCR	1 cut(s)	585
AfaI	GTAC	2 cut(s)	182, 640
AfiI	CCNNNNNNNGG	5 cut(s)	104, 289, 427, 590, 675
AgsI	TTSAA	1 cut(s)	254
AhlI	ACTAGT	1 cut(s)	145
AjnI	CCWGG	3 cut(s)	54, 339, 523
AluBI	AGCT	4 cut(s)	246, 503, 538, 648
AluI	AGCT	4 cut(s)	246, 503, 538, 648
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	353
Aor13HI	TCCGGA	1 cut(s)	104
AoxI	GGCC	8 cut(s)	311, 337, 342, 521, 549, 570, 585, 607
ApaI	GGGCCC	1 cut(s)	315
ApeKI	GCWGC	2 cut(s)	246, 680
AspS9I	GGNCC	9 cut(s)	311, 312, 343, 442, 521, 550, 570, 581, 607
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	121
AvaI	CYCGRG	1 cut(s)	353
AvaII	GGWCC	2 cut(s)	442, 581
BaeGI	GKGCMC	1 cut(s)	315
BanI	GGYRCC	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	315
BauI	CACGAG	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	2 cut(s)	233, 667
BccI	CCATC	2 cut(s)	323, 391
BceAI	ACGGC	1 cut(s)	161
BciT130I	CCWGG	3 cut(s)	56, 341, 525
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	11
BcuI	ACTAGT	1 cut(s)	145
BfaI	CTAG	3 cut(s)	146, 212, 539
BisI	GCNGC	4 cut(s)	72, 141, 247, 681
BlsI	GCNGC	4 cut(s)	73, 142, 248, 682
Bme1390I	CCNGG	4 cut(s)	56, 98, 341, 525
Bme18I	GGWCC	2 cut(s)	442, 581
BmeT110I	CYCGRG	1 cut(s)	353
BmgT120I	GGNCC	9 cut(s)	311, 312, 343, 442, 521, 550, 570, 581, 607
BmiI	GGNNCC	3 cut(s)	217, 313, 571
BmrFI	CCNGG	4 cut(s)	56, 98, 341, 525
BmrI	ACTGGG	1 cut(s)	600
BmsI	GCATC	2 cut(s)	162, 532
BmuI	ACTGGG	1 cut(s)	600
BpuEI	CTTGAG	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	5 cut(s)	138, 219, 288, 426, 546
BsaWI	WCCGGW	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	5 cut(s)	104, 289, 427, 590, 675
Bse118I	RCCGGY	1 cut(s)	583
Bse1I	ACTGG	1 cut(s)	595
Bse3DI	GCAATG	1 cut(s)	200
BseAI	TCCGGA	1 cut(s)	104
BseBI	CCWGG	3 cut(s)	56, 341, 525
BseDI	CCNNGG	5 cut(s)	138, 219, 288, 426, 546
BseGI	GGATG	1 cut(s)	402
BseLI	CCNNNNNNNGG	5 cut(s)	104, 289, 427, 590, 675
BseMI	GCAATG	1 cut(s)	200
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	595
BseRI	GAGGAG	1 cut(s)	219
BseSI	GKGCMC	1 cut(s)	315
BseXI	GCAGC	2 cut(s)	233, 667
BseYI	CCCAGC	1 cut(s)	518
Bsh1236I	CGCG	2 cut(s)	71, 140
Bsh1285I	CGRYCG	1 cut(s)	324
BshFI	GGCC	8 cut(s)	313, 339, 344, 523, 551, 572, 587, 609
BshNI	GGYRCC	1 cut(s)	215
BsiEI	CGRYCG	1 cut(s)	324
BsiHKAI	GWGCWC	1 cut(s)	411
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	3 cut(s)	98, 105, 584
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	5 cut(s)	104, 289, 427, 590, 675
BsmAI	GTCTC	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	346
BsmI	GAATGC	1 cut(s)	471
BsnI	GGCC	8 cut(s)	313, 339, 344, 523, 551, 572, 587, 609
Bso31I	GGTCTC	1 cut(s)	11
BsoBI	CYCGRG	1 cut(s)	353
Bsp120I	GGGCCC	1 cut(s)	311
Bsp1286I	GDGCHC	2 cut(s)	315, 411
Bsp13I	TCCGGA	1 cut(s)	104
Bsp1407I	TGTACA	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	3, 327
Bsp19I	CCATGG	1 cut(s)	426
BspACI	CCGC	4 cut(s)	71, 138, 140, 412
BspANI	GGCC	8 cut(s)	313, 339, 344, 523, 551, 572, 587, 609
BspCNI	CTCAG	1 cut(s)	41
BspEI	TCCGGA	1 cut(s)	104
BspFNI	CGCG	2 cut(s)	71, 140
BspLI	GGNNCC	3 cut(s)	217, 313, 571
BspPI	GGATC	1 cut(s)	335
BspT107I	GGYRCC	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	583
BsrGI	TGTACA	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	595
BssAI	RCCGGY	1 cut(s)	583
BssECI	CCNNGG	5 cut(s)	138, 219, 288, 426, 546
BssMI	GATC	2 cut(s)	3, 327
BssSI	CACGAG	1 cut(s)	168
BssT1I	CCWWGG	2 cut(s)	219, 426
Bst2BI	CACGAG	1 cut(s)	168
Bst2UI	CCWGG	3 cut(s)	56, 341, 525
Bst4CI	ACNGT	2 cut(s)	289, 322
BstAUI	TGTACA	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	685
BstDEI	CTNAG	1 cut(s)	28
BstDSI	CCRYGG	3 cut(s)	138, 288, 426
BstF5I	GGATG	1 cut(s)	402
BstFNI	CGCG	2 cut(s)	71, 140
BstKTI	GATC	2 cut(s)	6, 330
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	2 cut(s)	3, 327
BstMCI	CGRYCG	1 cut(s)	324
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 230
BstNI	CCWGG	3 cut(s)	56, 341, 525
BstSCI	CCNGG	4 cut(s)	54, 96, 339, 523
BstSLI	GKGCMC	1 cut(s)	315
BstUI	CGCG	2 cut(s)	71, 140
BstV1I	GCAGC	2 cut(s)	233, 667
BsuRI	GGCC	8 cut(s)	313, 339, 344, 523, 551, 572, 587, 609
BtgI	CCRYGG	3 cut(s)	138, 288, 426
BtgZI	GCGATG	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	402
BtsIMutI	CAGTG	1 cut(s)	588
Cac8I	GCNNGC	1 cut(s)	685
Cfr10I	RCCGGY	1 cut(s)	583
Cfr13I	GGNCC	9 cut(s)	311, 312, 343, 442, 521, 550, 570, 581, 607
Cfr42I	CCGCGG	1 cut(s)	141
CseI	GACGC	2 cut(s)	187, 375
Csp6I	GTAC	2 cut(s)	181, 639
CviAII	CATG	4 cut(s)	190, 427, 670, 688
CviQI	GTAC	2 cut(s)	181, 639
DdeI	CTNAG	1 cut(s)	28
DpnI	GATC	2 cut(s)	5, 329
DpnII	GATC	2 cut(s)	3, 327
EaeI	YGGCCR	1 cut(s)	585
Eco130I	CCWWGG	2 cut(s)	219, 426
Eco24I	GRGCYC	1 cut(s)	315
Eco31I	GGTCTC	1 cut(s)	11
Eco32I	GATATC	1 cut(s)	693
Eco47I	GGWCC	2 cut(s)	442, 581
Eco88I	CYCGRG	1 cut(s)	353
EcoO109I	RGGNCCY	2 cut(s)	311, 343
EcoRII	CCWGG	3 cut(s)	54, 339, 523
EcoRV	GATATC	1 cut(s)	693
EcoT14I	CCWWGG	2 cut(s)	219, 426
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	2 cut(s)	219, 426
FaeI	CATG	4 cut(s)	193, 430, 673, 691
FaiI	YATR	8 cut(s)	191, 364, 394, 428, 440, 671, 689, 704
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	4 cut(s)	189, 426, 669, 687
Fnu4HI	GCNGC	4 cut(s)	72, 141, 247, 681
FokI	GGATG	1 cut(s)	409
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	4 cut(s)	72, 141, 247, 681
FspBI	CTAG	3 cut(s)	146, 212, 539
GluI	GCNGC	4 cut(s)	72, 141, 247, 681
GsaI	CCCAGC	1 cut(s)	522
HaeIII	GGCC	8 cut(s)	313, 339, 344, 523, 551, 572, 587, 609
HapII	CCGG	3 cut(s)	98, 105, 584
HgaI	GACGC	2 cut(s)	187, 375
Hin1II	CATG	4 cut(s)	193, 430, 673, 691
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HinfI	GANTC	1 cut(s)	76
HpaII	CCGG	3 cut(s)	98, 105, 584
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	2 cut(s)	181, 661
Hpy188I	TCNGA	2 cut(s)	203, 458
Hpy188III	TCNNGA	8 cut(s)	105, 168, 299, 325, 331, 355, 487, 579
Hpy8I	GTNNAC	2 cut(s)	181, 661
Hpy99I	CGWCG	3 cut(s)	203, 391, 458
HpyAV	CCTTC	1 cut(s)	502
HpyCH4III	ACNGT	2 cut(s)	289, 322
HpyCH4IV	ACGT	1 cut(s)	641
HpyCH4V	TGCA	4 cut(s)	193, 279, 366, 683
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 230
HpyF3I	CTNAG	1 cut(s)	28
HpySE526I	ACGT	1 cut(s)	641
Hsp92II	CATG	4 cut(s)	193, 430, 673, 691
Kpn2I	TCCGGA	1 cut(s)	104
KspI	CCGCGG	1 cut(s)	141
Kzo9I	GATC	2 cut(s)	3, 327
Lsp1109I	GCAGC	2 cut(s)	233, 667
LweI	GCATC	2 cut(s)	162, 532
MaeI	CTAG	3 cut(s)	146, 212, 539
MaeII	ACGT	1 cut(s)	641
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	2 cut(s)	5, 329
MboI	GATC	2 cut(s)	3, 327
MboII	GAAGA	2 cut(s)	266, 687
MhlI	GDGCHC	2 cut(s)	315, 411
MluCI	AATT	1 cut(s)	84
MmeI	TCCRAC	2 cut(s)	181, 436
MroI	TCCGGA	1 cut(s)	104
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	3 cut(s)	188, 476, 668
MspA1I	CMGCKG	3 cut(s)	140, 246, 503
MspI	CCGG	3 cut(s)	98, 105, 584
MspR9I	CCNGG	4 cut(s)	56, 98, 341, 525
Mva1269I	GAATGC	1 cut(s)	471
MvaI	CCWGG	3 cut(s)	56, 341, 525
MvnI	CGCG	2 cut(s)	71, 140
MwoI	GCNNNNNNNGC	2 cut(s)	68, 230
NciI	CCSGG	1 cut(s)	98
NcoI	CCATGG	1 cut(s)	426
NdeII	GATC	2 cut(s)	3, 327
NlaIII	CATG	4 cut(s)	193, 430, 673, 691
NlaIV	GGNNCC	3 cut(s)	217, 313, 571
NmeAIII	GCCGAG	1 cut(s)	527
PaeR7I	CTCGAG	1 cut(s)	353
PctI	GAATGC	1 cut(s)	471
PfeI	GAWTC	1 cut(s)	76
PflMI	CCANNNNNTGG	1 cut(s)	427
PkrI	GCNGC	4 cut(s)	73, 142, 248, 682
Psp6I	CCWGG	3 cut(s)	54, 339, 523
PspFI	CCCAGC	1 cut(s)	518
PspGI	CCWGG	3 cut(s)	54, 339, 523
PspN4I	GGNNCC	3 cut(s)	217, 313, 571
PspOMI	GGGCCC	1 cut(s)	311
PspPI	GGNCC	9 cut(s)	311, 312, 343, 442, 521, 550, 570, 581, 607
PvuII	CAGCTG	2 cut(s)	246, 503
RsaI	GTAC	2 cut(s)	182, 640
RsaNI	GTAC	2 cut(s)	181, 639
RseI	CAYNNNNRTG	3 cut(s)	188, 476, 668
SacII	CCGCGG	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	4 cut(s)	72, 141, 247, 681
Sau3AI	GATC	2 cut(s)	3, 327
Sau96I	GGNCC	9 cut(s)	311, 312, 343, 442, 521, 550, 570, 581, 607
ScrFI	CCNGG	4 cut(s)	56, 98, 341, 525
SduI	GDGCHC	2 cut(s)	315, 411
SfaNI	GCATC	2 cut(s)	162, 532
Sfr274I	CTCGAG	1 cut(s)	353
Sfr303I	CCGCGG	1 cut(s)	141
SgrBI	CCGCGG	1 cut(s)	141
SinI	GGWCC	2 cut(s)	442, 581
SlaI	CTCGAG	1 cut(s)	353
SmiMI	CAYNNNNRTG	3 cut(s)	188, 476, 668
SmlI	CTYRAG	2 cut(s)	227, 353
SmoI	CTYRAG	2 cut(s)	227, 353
SpeI	ACTAGT	1 cut(s)	145
Sse9I	AATT	1 cut(s)	84
SsiI	CCGC	4 cut(s)	71, 138, 140, 412
SspMI	CTAG	3 cut(s)	146, 212, 539
StyD4I	CCNGG	4 cut(s)	54, 96, 339, 523
StyI	CCWWGG	2 cut(s)	219, 426
TaaI	ACNGT	2 cut(s)	289, 322
TaiI	ACGT	1 cut(s)	644
TaqI	TCGA	5 cut(s)	354, 389, 405, 488, 698
TasI	AATT	1 cut(s)	84
TatI	WGTACW	1 cut(s)	180
TauI	GCSGC	2 cut(s)	74, 143
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	1 cut(s)	595
TseI	GCWGC	2 cut(s)	246, 680
TspDTI	ATGAA	2 cut(s)	178, 545
TspRI	CASTG	1 cut(s)	595
Van91I	CCANNNNNTGG	1 cut(s)	427
VpaK11BI	GGWCC	2 cut(s)	442, 581
XhoI	CTCGAG	1 cut(s)	353
XspI	CTAG	3 cut(s)	146, 212, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.