Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0009647

Physical Location & Seq

Genomic Coordinates Forward (+)

4145746 .. 4147118

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G002590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCTCAAATCAACAGGCCAACAATGGAGGAAGATAAAGTTCATGCCTTCTCTTCCCCCATGCCATTAATGTCAGAACATTGGAAGACTGAAGAAGGGAAGAAATCCAATCCCTCCACTTTGAGTGAGGTTTTGGGCTTGCGCGAGTTATTTTCTCCACAGGTGTGGAGAGCATCTCTAGCTGAGCTGGTTGGCACGGCAGTGCTTGTTTTTGCTATAGACGCAATTGTGATCTCCTCCATTGAGACCAACATCTCAGCACCAAACCTTGTATTGTCAATCCTGGTAGCAATCATCGCGGCGATTCTCCTAATTGCTACCAACCCGGTTTCTGGAGGCCACATCAACCCCGTCATCACCTTTTCCGCAGCACTGGTCGGCATCATTTCCTTCTCACGAGCTGCCGTGTACATTTTCATGCAATGCGTCGGAGGAGTTCTAGGTGCCTTGGCACTCAAGGCTGTGGTTAACAGCAGCCTTGAAGAAACATTCTCACTTGGAGGTTGCACCCTAACCGTGGTTTCCCCAGGCCCACAAGGGCCCATCACGGTCGGGATCGAGACAGGCCAGGCCCTTTGGCTCGAGATAATATGCACATTTATTTTCCTCTTTGCTTCGATATGGATGGCGTTCGACCACCGCCAAGCCCACGCCATGGGTAAGGTTATGGTCCTCTCTATCGTCGGAATAGTGGTGGGCGTTCTTGTGTTTATCTCGACCTCTGTAACAACCGTGAAGGGCTACGCTGGGGCTGGAATGAACCCAGCTAGGTGTCTCGGCCCAGCGCTTGTTCGTGGGGGCCACCTCTGGACCGGCCATTGGGTATTTTGGGTCGGGCCTACTATTTCTTGCTTGGCTTTCTACTTGTACGTCAAGCTCATTCCCCGTCAACATTTCCATGTAGAGGGCTACAAGCATGATATCTTCAACTATGTGAAGTCTCTTCCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042221 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04962 ko04976 map04962 map04976

Pfam Domains

Protein Families

MIP

Protein Analysis

317

Amino Acids

34.07

Weight (kDa)

7.73

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	51 - 284	1.7e-38	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009647)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02190 FvH4_2g02190 FvH4_2g02190
malus_domestica	MD10G1116500.v1.1
prunus_persica	Prupe.8G159000_v2.0.a1
pyrus_communis	pycom10g10120
rosa_chinensis	RchiOBHm_Chr6g0245741 RchiOBHm_Chr6g0245821 RchiOBHm_Chr6g0245841 RchiOBHm_Chr6g0245861
rosa_laevigata	RLG00000015294
rosa_multiflora	Rmu_sc0008277.1_g000009
rosa_roxburghii	Rroxscaffold_7G00215130
rosa_rugosa	Rorug05G0515900 Rorug05G0516100
rosa_samantha	Rh6AG030800 Rh6AG031100 Rh6BG027600 Rh6CG027000 Rh6DG026300
rosa_wichuraiana	Rw6G002590 Rw6G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	443
AccB7I	CCANNNNNTGG	1 cut(s)	655
AccII	CGCG	2 cut(s)	144, 299
AciI	CCGC	3 cut(s)	299, 366, 640
AclWI	GGATC	1 cut(s)	563
AcoI	YGGCCR	1 cut(s)	814
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	2 cut(s)	410, 869
AfeI	AGCGCT	1 cut(s)	786
AfiI	CCNNNNNNNGG	5 cut(s)	332, 517, 655, 819, 904
AgsI	TTSAA	2 cut(s)	482, 928
AjnI	CCWGG	3 cut(s)	282, 526, 567
AleI	CACNNNNGTG	2 cut(s)	163, 200
AluBI	AGCT	5 cut(s)	182, 187, 401, 767, 877
AluI	AGCT	5 cut(s)	182, 187, 401, 767, 877
Alw26I	GTCTC	4 cut(s)	239, 554, 779, 945
AlwI	GGATC	1 cut(s)	563
Ama87I	CYCGRG	1 cut(s)	581
Aor51HI	AGCGCT	1 cut(s)	786
ApaI	GGGCCC	1 cut(s)	543
ApeKI	GCWGC	3 cut(s)	368, 401, 474
AseI	ATTAAT	1 cut(s)	68
AspLEI	GCGC	2 cut(s)	144, 787
AspS9I	GGNCC	9 cut(s)	530, 539, 540, 571, 670, 779, 799, 810, 836
AsuC2I	CCSGG	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	349
AvaI	CYCGRG	1 cut(s)	581
AvaII	GGWCC	2 cut(s)	670, 810
BaeGI	GKGCMC	1 cut(s)	543
BanI	GGYRCC	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	543
BauI	CACGAG	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	92
BbvI	GCAGC	3 cut(s)	380, 388, 486
BccI	CCATC	2 cut(s)	551, 619
BceAI	ACGGC	2 cut(s)	213, 389
BciT130I	CCWGG	3 cut(s)	284, 528, 569
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	4 cut(s)	239, 554, 779, 945
BfaI	CTAG	3 cut(s)	179, 440, 768
BfmI	CTRYAG	1 cut(s)	216
BfoI	RGCGCY	1 cut(s)	788
BisI	GCNGC	4 cut(s)	300, 369, 402, 475
BlpI	GCTNAGC	1 cut(s)	183
BlsI	GCNGC	4 cut(s)	301, 370, 403, 476
Bme1390I	CCNGG	4 cut(s)	284, 326, 528, 569
Bme18I	GGWCC	2 cut(s)	670, 810
BmeT110I	CYCGRG	1 cut(s)	581
BmgT120I	GGNCC	9 cut(s)	530, 539, 540, 571, 670, 779, 799, 810, 836
BmiI	GGNNCC	3 cut(s)	445, 541, 800
BmrFI	CCNGG	4 cut(s)	284, 326, 528, 569
BmsI	GCATC	2 cut(s)	182, 390
BpiI	GAAGAC	1 cut(s)	92
BplI	GAGNNNNNCTC	2 cut(s)	160, 192
BpmI	CTGGAG	1 cut(s)	354
Bpu1102I	GCTNAGC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	440
BpuMI	CCSGG	1 cut(s)	326
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	4 cut(s)	447, 516, 526, 654
Bsc4I	CCNNNNNNNGG	5 cut(s)	332, 517, 655, 819, 904
Bse118I	RCCGGY	1 cut(s)	812
Bse1I	ACTGG	1 cut(s)	378
Bse3DI	GCAATG	1 cut(s)	428
BseBI	CCWGG	3 cut(s)	284, 528, 569
BseDI	CCNNGG	4 cut(s)	447, 516, 526, 654
BseGI	GGATG	1 cut(s)	630
BseLI	CCNNNNNNNGG	5 cut(s)	332, 517, 655, 819, 904
BseMI	GCAATG	1 cut(s)	428
BseMII	CTCAG	2 cut(s)	174, 270
BseNI	ACTGG	1 cut(s)	378
BseRI	GAGGAG	2 cut(s)	226, 447
BseSI	GKGCMC	1 cut(s)	543
BseXI	GCAGC	3 cut(s)	380, 388, 486
BseYI	CCCAGC	3 cut(s)	746, 763, 781
Bsh1236I	CGCG	2 cut(s)	144, 299
Bsh1285I	CGRYCG	1 cut(s)	552
BshNI	GGYRCC	1 cut(s)	443
BsiEI	CGRYCG	1 cut(s)	552
BsiHKCI	CYCGRG	1 cut(s)	581
BsiSI	CCGG	2 cut(s)	326, 813
BslI	CCNNNNNNNGG	5 cut(s)	332, 517, 655, 819, 904
BsmAI	GTCTC	4 cut(s)	239, 554, 779, 945
Bso31I	GGTCTC	1 cut(s)	239
BsoBI	CYCGRG	1 cut(s)	581
Bsp120I	GGGCCC	1 cut(s)	539
Bsp1286I	GDGCHC	1 cut(s)	543
Bsp1407I	TGTACA	1 cut(s)	408
Bsp143I	GATC	2 cut(s)	231, 555
Bsp1720I	GCTNAGC	1 cut(s)	183
Bsp19I	CCATGG	1 cut(s)	654
BspACI	CCGC	3 cut(s)	299, 366, 640
BspCNI	CTCAG	2 cut(s)	175, 269
BspFNI	CGCG	2 cut(s)	144, 299
BspLI	GGNNCC	3 cut(s)	445, 541, 800
BspPI	GGATC	1 cut(s)	563
BspT107I	GGYRCC	1 cut(s)	443
BspTNI	GGTCTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	428
BsrFI	RCCGGY	1 cut(s)	812
BsrGI	TGTACA	1 cut(s)	408
BsrI	ACTGG	1 cut(s)	378
BssAI	RCCGGY	1 cut(s)	812
BssECI	CCNNGG	4 cut(s)	447, 516, 526, 654
BssMI	GATC	2 cut(s)	231, 555
BssSI	CACGAG	1 cut(s)	396
BssT1I	CCWWGG	2 cut(s)	447, 654
Bst2BI	CACGAG	1 cut(s)	396
Bst2UI	CCWGG	3 cut(s)	284, 528, 569
Bst4CI	ACNGT	3 cut(s)	517, 550, 733
Bst6I	CTCTTC	2 cut(s)	58, 948
BstAUI	TGTACA	1 cut(s)	408
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	2 cut(s)	183, 256
BstDSI	CCRYGG	2 cut(s)	516, 654
BstF5I	GGATG	1 cut(s)	630
BstFNI	CGCG	2 cut(s)	144, 299
BstH2I	RGCGCY	1 cut(s)	788
BstHHI	GCGC	2 cut(s)	144, 787
BstKTI	GATC	2 cut(s)	234, 558
BstMAI	GTCTC	4 cut(s)	239, 554, 779, 945
BstMBI	GATC	2 cut(s)	231, 555
BstMCI	CGRYCG	1 cut(s)	552
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 221, 296, 458
BstNI	CCWGG	3 cut(s)	284, 528, 569
BstSCI	CCNGG	4 cut(s)	282, 324, 526, 567
BstSFI	CTRYAG	1 cut(s)	216
BstSLI	GKGCMC	1 cut(s)	543
BstUI	CGCG	2 cut(s)	144, 299
BstV1I	GCAGC	3 cut(s)	380, 388, 486
BstV2I	GAAGAC	1 cut(s)	92
BstXI	CCANNNNNNTGG	1 cut(s)	165
BtgI	CCRYGG	2 cut(s)	516, 654
BtgZI	GCGATG	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	630
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	2 cut(s)	207, 371
Cac8I	GCNNGC	1 cut(s)	140
CfoI	GCGC	2 cut(s)	144, 787
Cfr10I	RCCGGY	1 cut(s)	812
Cfr13I	GGNCC	9 cut(s)	530, 539, 540, 571, 670, 779, 799, 810, 836
CseI	GACGC	2 cut(s)	230, 415
Csp6I	GTAC	2 cut(s)	409, 868
CviAII	CATG	6 cut(s)	44, 61, 418, 655, 899, 917
CviQI	GTAC	2 cut(s)	409, 868
DdeI	CTNAG	2 cut(s)	183, 256
DpnI	GATC	2 cut(s)	233, 557
DpnII	GATC	2 cut(s)	231, 555
EaeI	YGGCCR	1 cut(s)	814
Eam1104I	CTCTTC	2 cut(s)	58, 948
EarI	CTCTTC	2 cut(s)	58, 948
Eco130I	CCWWGG	2 cut(s)	447, 654
Eco24I	GRGCYC	1 cut(s)	543
Eco31I	GGTCTC	1 cut(s)	239
Eco32I	GATATC	1 cut(s)	922
Eco47I	GGWCC	2 cut(s)	670, 810
Eco47III	AGCGCT	1 cut(s)	786
Eco57I	CTGAAG	1 cut(s)	111
Eco88I	CYCGRG	1 cut(s)	581
EcoO109I	RGGNCCY	2 cut(s)	539, 571
EcoRII	CCWGG	3 cut(s)	282, 526, 567
EcoRV	GATATC	1 cut(s)	922
EcoT14I	CCWWGG	2 cut(s)	447, 654
EcoT38I	GRGCYC	1 cut(s)	543
ErhI	CCWWGG	2 cut(s)	447, 654
FaeI	CATG	6 cut(s)	47, 64, 421, 658, 902, 920
FatI	CATG	6 cut(s)	43, 60, 417, 654, 898, 916
Fnu4HI	GCNGC	4 cut(s)	300, 369, 402, 475
FokI	GGATG	1 cut(s)	637
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	4 cut(s)	300, 369, 402, 475
FspBI	CTAG	3 cut(s)	179, 440, 768
GlaI	GCGC	2 cut(s)	143, 786
GluI	GCNGC	4 cut(s)	300, 369, 402, 475
GsaI	CCCAGC	3 cut(s)	750, 767, 785
GsuI	CTGGAG	1 cut(s)	354
HaeII	RGCGCY	1 cut(s)	788
HapII	CCGG	2 cut(s)	326, 813
HgaI	GACGC	2 cut(s)	230, 415
HhaI	GCGC	2 cut(s)	144, 787
Hin1II	CATG	6 cut(s)	47, 64, 421, 658, 902, 920
Hin6I	GCGC	2 cut(s)	142, 785
HinP1I	GCGC	2 cut(s)	142, 785
HincII	GTYRAC	2 cut(s)	469, 890
HindII	GTYRAC	2 cut(s)	469, 890
HinfI	GANTC	1 cut(s)	304
HpaI	GTTAAC	1 cut(s)	469
HpaII	CCGG	2 cut(s)	326, 813
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	3 cut(s)	409, 469, 890
Hpy188I	TCNGA	3 cut(s)	76, 431, 686
Hpy188III	TCNNGA	7 cut(s)	333, 396, 553, 559, 583, 715, 808
Hpy8I	GTNNAC	3 cut(s)	409, 469, 890
Hpy99I	CGWCG	2 cut(s)	431, 686
HpyAV	CCTTC	4 cut(s)	58, 89, 400, 730
HpyCH4III	ACNGT	3 cut(s)	517, 550, 733
HpyCH4IV	ACGT	1 cut(s)	870
HpyCH4V	TGCA	3 cut(s)	421, 507, 594
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 221, 296, 458
HpyF3I	CTNAG	2 cut(s)	183, 256
HpySE526I	ACGT	1 cut(s)	870
Hsp92II	CATG	6 cut(s)	47, 64, 421, 658, 902, 920
HspAI	GCGC	2 cut(s)	142, 785
KspAI	GTTAAC	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	231, 555
Lsp1109I	GCAGC	3 cut(s)	380, 388, 486
LweI	GCATC	2 cut(s)	182, 390
MaeI	CTAG	3 cut(s)	179, 440, 768
MaeII	ACGT	1 cut(s)	870
MaeIII	GTNAC	1 cut(s)	724
MalI	GATC	2 cut(s)	233, 557
MboI	GATC	2 cut(s)	231, 555
MboII	GAAGA	8 cut(s)	44, 45, 97, 104, 112, 494, 916, 935
MfeI	CAATTG	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	543
MluCI	AATT	2 cut(s)	225, 312
MmeI	TCCRAC	2 cut(s)	409, 664
MseI	TTAA	2 cut(s)	68, 468
MslI	CAYNNNNRTG	4 cut(s)	163, 200, 416, 897
MspI	CCGG	2 cut(s)	326, 813
MspR9I	CCNGG	4 cut(s)	284, 326, 528, 569
MunI	CAATTG	1 cut(s)	225
MvaI	CCWGG	3 cut(s)	284, 528, 569
MvnI	CGCG	2 cut(s)	144, 299
MwoI	GCNNNNNNNGC	4 cut(s)	179, 221, 296, 458
NciI	CCSGG	1 cut(s)	326
NcoI	CCATGG	1 cut(s)	654
NdeII	GATC	2 cut(s)	231, 555
NlaIII	CATG	6 cut(s)	47, 64, 421, 658, 902, 920
NlaIV	GGNNCC	3 cut(s)	445, 541, 800
NmeAIII	GCCGAG	1 cut(s)	756
OliI	CACNNNNGTG	2 cut(s)	163, 200
PaeR7I	CTCGAG	1 cut(s)	581
PfeI	GAWTC	1 cut(s)	304
PflMI	CCANNNNNTGG	1 cut(s)	655
PkrI	GCNGC	4 cut(s)	301, 370, 403, 476
PshBI	ATTAAT	1 cut(s)	68
Psp6I	CCWGG	3 cut(s)	282, 526, 567
PspFI	CCCAGC	3 cut(s)	746, 763, 781
PspGI	CCWGG	3 cut(s)	282, 526, 567
PspN4I	GGNNCC	3 cut(s)	445, 541, 800
PspOMI	GGGCCC	1 cut(s)	539
PspPI	GGNCC	9 cut(s)	530, 539, 540, 571, 670, 779, 799, 810, 836
RsaI	GTAC	2 cut(s)	410, 869
RsaNI	GTAC	2 cut(s)	409, 868
RseI	CAYNNNNRTG	4 cut(s)	163, 200, 416, 897
SaqAI	TTAA	2 cut(s)	68, 468
SatI	GCNGC	4 cut(s)	300, 369, 402, 475
Sau3AI	GATC	2 cut(s)	231, 555
Sau96I	GGNCC	9 cut(s)	530, 539, 540, 571, 670, 779, 799, 810, 836
ScrFI	CCNGG	4 cut(s)	284, 326, 528, 569
SduI	GDGCHC	1 cut(s)	543
SfaNI	GCATC	2 cut(s)	182, 390
SfcI	CTRYAG	1 cut(s)	216
Sfr274I	CTCGAG	1 cut(s)	581
SinI	GGWCC	2 cut(s)	670, 810
SlaI	CTCGAG	1 cut(s)	581
SmiMI	CAYNNNNRTG	4 cut(s)	163, 200, 416, 897
SmlI	CTYRAG	2 cut(s)	455, 581
SmoI	CTYRAG	2 cut(s)	455, 581
Sse9I	AATT	2 cut(s)	225, 312
SsiI	CCGC	3 cut(s)	299, 366, 640
SspMI	CTAG	3 cut(s)	179, 440, 768
StyD4I	CCNGG	4 cut(s)	282, 324, 526, 567
StyI	CCWWGG	2 cut(s)	447, 654
TaaI	ACNGT	3 cut(s)	517, 550, 733
TaiI	ACGT	1 cut(s)	873
TaqI	TCGA	5 cut(s)	558, 582, 617, 633, 716
TasI	AATT	2 cut(s)	225, 312
TatI	WGTACW	1 cut(s)	408
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	2 cut(s)	68, 468
Tru9I	TTAA	2 cut(s)	68, 468
TscAI	CASTG	2 cut(s)	207, 378
TseI	GCWGC	3 cut(s)	368, 401, 474
TspDTI	ATGAA	3 cut(s)	32, 406, 773
TspRI	CASTG	2 cut(s)	207, 378
Van91I	CCANNNNNTGG	1 cut(s)	655
VpaK11BI	GGWCC	2 cut(s)	670, 810
VspI	ATTAAT	1 cut(s)	68
XhoI	CTCGAG	1 cut(s)	581
XspI	CTAG	3 cut(s)	179, 440, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.