Rh6BG027600

Belongs to the MIP aquaporin (TC 1.A.8) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0009647
Physical Location & Seq
Forward (+)
4134935 .. 4136430
1496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG027600.1

Sequence Viewer

Length: 954 bp
ATGGCTCAAATCAACAGGCCAACGATGGAGGAAGATAAAGTTCATGCTTTCTCTTCCCCCATGCCATTAATGTCAGAACATTGGAAGACTGAAGAAGGGAAGAAATCCAATCCCTCCACTTTGAGTGAGGTTTTGGGCTTGCGCGAGTTATTTTCTCCACAGGTGTGGAGAGCATCTCTAGCTGAGCTGGTTGGCACGGCAGTGCTTGTTTTTGCTATAGACGCAATTGTGATCTCCTCCATTGAGACCAACATCTCAGCACCAAACCTTGTATTGTCAATCCTGGTAGCAACCATCGCGGCGATTCTCCTAATTGCTACCAACCCGGTTTCCGGAGGCCACATCAACCCCGTCATCACCTTTTCCGCAGCACTGGTCGGCATCATTTCCTTCTCACGCGCTGCCGTGTACATTTTCATGCAATGCGTCGGAGGAGTTCTAGGTGCCTTGGCACTCAAGGCTGTGGTTAACAGAAGCCTTGAAGAAACATTCTCACTTGGAGGTTGCACCCTAACCGTGGTTACCCCGGGCCCACAAGGGCCCATCACGGTCGGGATCGGGACAGGACAGGCCCTTTGGCTCGAGATAATATGCACATTTATTTTCCTCTTCGCTTCGATATGGTTGGCGTTCGACCACCGCCAAGCCCACGCCATGGGTAAGGTTATGGTCCTCTCTATCGTTGGAATAGTGGTGGGCATTCTTGTGTTTATCTCGACCTCTGTAACAACCGTGAAGGGCTACGCTGGGGCTGGAATGAACCCAGCCAGATGTCTCGGCCCAGCACTTGTTCGTGGGGGCCACCTCTGGACCGGCCACTGGGTATTTTGGGTCGGGCCTACTATTTCTTGCTTCGCTTTCTACTTGTACGTCAGGCTCATTCCCCGTCAACATTTCCATGTGGAGGGCTACAAGCATGATATCTTCAACTATGTGAAGACTCTTCCAAAGTAG

Protein Analysis

317

Amino Acids

34.14

Weight (kDa)

8.6

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIP PF00230 51 - 283 2.2e-38 Major intrinsic protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 443
AccB7I CCANNNNNTGG 1 cut(s) 655
AccII CGCG 3 cut(s) 144, 299, 399
AccIII TCCGGA 1 cut(s) 332
AciI CCGC 3 cut(s) 299, 366, 640
AclWI GGATC 1 cut(s) 563
AcoI YGGCCR 1 cut(s) 814
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 2 cut(s) 410, 869
AfiI CCNNNNNNNGG 5 cut(s) 332, 517, 655, 819, 904
AgsI TTSAA 2 cut(s) 482, 928
AjnI CCWGG 1 cut(s) 282
AleI CACNNNNGTG 2 cut(s) 163, 200
AluBI AGCT 2 cut(s) 182, 187
AluI AGCT 2 cut(s) 182, 187
Alw26I GTCTC 2 cut(s) 239, 779
AlwI GGATC 1 cut(s) 563
Ama87I CYCGRG 2 cut(s) 526, 581
Aor13HI TCCGGA 1 cut(s) 332
AoxI GGCC 9 cut(s) 17, 337, 529, 539, 570, 778, 799, 814, 836
ApaI GGGCCC 2 cut(s) 533, 543
ApeKI GCWGC 2 cut(s) 368, 401
ArsI GACNNNNNNTTYG 2 cut(s) 558, 590
AseI ATTAAT 1 cut(s) 68
AspLEI GCGC 2 cut(s) 144, 401
AsuC2I CCSGG 3 cut(s) 326, 527, 528
AsuHPI GGTGA 1 cut(s) 349
AvaI CYCGRG 2 cut(s) 526, 581
AvaII GGWCC 2 cut(s) 670, 810
BaeGI GKGCMC 2 cut(s) 533, 543
BanI GGYRCC 1 cut(s) 443
BanII GRGCYC 2 cut(s) 533, 543
BbsI GAAGAC 2 cut(s) 92, 944
BbvI GCAGC 2 cut(s) 380, 388
BccI CCATC 3 cut(s) 19, 302, 551
BceAI ACGGC 2 cut(s) 213, 389
BciT130I CCWGG 1 cut(s) 284
BcnI CCSGG 3 cut(s) 326, 527, 528
BcoDI GTCTC 2 cut(s) 239, 779
BfaI CTAG 2 cut(s) 179, 440
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 3 cut(s) 300, 369, 402
BlpI GCTNAGC 1 cut(s) 183
BlsI GCNGC 3 cut(s) 301, 370, 403
Bme1390I CCNGG 4 cut(s) 284, 326, 527, 528
Bme18I GGWCC 2 cut(s) 670, 810
BmeT110I CYCGRG 2 cut(s) 526, 581
BmiI GGNNCC 4 cut(s) 445, 531, 541, 800
BmrFI CCNGG 4 cut(s) 284, 326, 527, 528
BmrI ACTGGG 1 cut(s) 829
BmsI GCATC 2 cut(s) 182, 390
BmuI ACTGGG 1 cut(s) 829
BpiI GAAGAC 2 cut(s) 92, 944
BplI GAGNNNNNCTC 2 cut(s) 160, 192
Bpu1102I GCTNAGC 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 440
BpuMI CCSGG 3 cut(s) 326, 527, 528
BsaI GGTCTC 1 cut(s) 239
BsaJI CCNNGG 5 cut(s) 447, 516, 525, 526, 654
BsaWI WCCGGW 1 cut(s) 332
Bsc4I CCNNNNNNNGG 5 cut(s) 332, 517, 655, 819, 904
Bse118I RCCGGY 1 cut(s) 812
Bse1I ACTGG 2 cut(s) 378, 824
Bse3DI GCAATG 1 cut(s) 428
BseAI TCCGGA 1 cut(s) 332
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 5 cut(s) 447, 516, 525, 526, 654
BseLI CCNNNNNNNGG 5 cut(s) 332, 517, 655, 819, 904
BseMI GCAATG 1 cut(s) 428
BseMII CTCAG 2 cut(s) 174, 270
BseNI ACTGG 2 cut(s) 378, 824
BseRI GAGGAG 2 cut(s) 226, 447
BseSI GKGCMC 2 cut(s) 533, 543
BseXI GCAGC 2 cut(s) 380, 388
BseYI CCCAGC 3 cut(s) 746, 763, 781
Bsh1236I CGCG 3 cut(s) 144, 299, 399
Bsh1285I CGRYCG 1 cut(s) 552
BshFI GGCC 9 cut(s) 19, 339, 531, 541, 572, 780, 801, 816, 838
BshNI GGYRCC 1 cut(s) 443
BsiEI CGRYCG 1 cut(s) 552
BsiHKCI CYCGRG 2 cut(s) 526, 581
BsiSI CCGG 4 cut(s) 326, 333, 527, 813
BslFI GGGAC 1 cut(s) 574
BslI CCNNNNNNNGG 5 cut(s) 332, 517, 655, 819, 904
BsmAI GTCTC 2 cut(s) 239, 779
BsmFI GGGAC 1 cut(s) 574
BsmI GAATGC 1 cut(s) 699
BsnI GGCC 9 cut(s) 19, 339, 531, 541, 572, 780, 801, 816, 838
Bso31I GGTCTC 1 cut(s) 239
BsoBI CYCGRG 2 cut(s) 526, 581
Bsp120I GGGCCC 2 cut(s) 529, 539
Bsp1286I GDGCHC 2 cut(s) 533, 543
Bsp13I TCCGGA 1 cut(s) 332
Bsp1407I TGTACA 1 cut(s) 408
Bsp143I GATC 2 cut(s) 231, 555
Bsp1720I GCTNAGC 1 cut(s) 183
Bsp19I CCATGG 1 cut(s) 654
BspACI CCGC 3 cut(s) 299, 366, 640
BspANI GGCC 9 cut(s) 19, 339, 531, 541, 572, 780, 801, 816, 838
BspCNI CTCAG 2 cut(s) 175, 269
BspEI TCCGGA 1 cut(s) 332
BspFNI CGCG 3 cut(s) 144, 299, 399
BspLI GGNNCC 4 cut(s) 445, 531, 541, 800
BspPI GGATC 1 cut(s) 563
BspT107I GGYRCC 1 cut(s) 443
BspTNI GGTCTC 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 428
BsrFI RCCGGY 1 cut(s) 812
BsrGI TGTACA 1 cut(s) 408
BsrI ACTGG 2 cut(s) 378, 824
BssAI RCCGGY 1 cut(s) 812
BssECI CCNNGG 5 cut(s) 447, 516, 525, 526, 654
BssMI GATC 2 cut(s) 231, 555
BssT1I CCWWGG 2 cut(s) 447, 654
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 3 cut(s) 517, 550, 733
Bst6I CTCTTC 3 cut(s) 58, 614, 948
BstAUI TGTACA 1 cut(s) 408
BstC8I GCNNGC 1 cut(s) 140
BstDEI CTNAG 2 cut(s) 183, 256
BstDSI CCRYGG 2 cut(s) 516, 654
BstEII GGTNACC 1 cut(s) 520
BstFNI CGCG 3 cut(s) 144, 299, 399
BstHHI GCGC 2 cut(s) 144, 401
BstKTI GATC 2 cut(s) 234, 558
BstMAI GTCTC 2 cut(s) 239, 779
BstMBI GATC 2 cut(s) 231, 555
BstMCI CGRYCG 1 cut(s) 552
BstMWI GCNNNNNNNGC 4 cut(s) 179, 221, 296, 458
BstNI CCWGG 1 cut(s) 284
BstPI GGTNACC 1 cut(s) 520
BstSCI CCNGG 4 cut(s) 282, 324, 525, 526
BstSFI CTRYAG 1 cut(s) 216
BstSLI GKGCMC 2 cut(s) 533, 543
BstUI CGCG 3 cut(s) 144, 299, 399
BstV1I GCAGC 2 cut(s) 380, 388
BstV2I GAAGAC 2 cut(s) 92, 944
BstXI CCANNNNNNTGG 1 cut(s) 165
BsuRI GGCC 9 cut(s) 19, 339, 531, 541, 572, 780, 801, 816, 838
BtgI CCRYGG 2 cut(s) 516, 654
BtgZI GCGATG 1 cut(s) 280
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 3 cut(s) 207, 371, 817
Cac8I GCNNGC 1 cut(s) 140
CfoI GCGC 2 cut(s) 144, 401
Cfr10I RCCGGY 1 cut(s) 812
Cfr9I CCCGGG 1 cut(s) 526
CseI GACGC 2 cut(s) 230, 415
Csp6I GTAC 2 cut(s) 409, 868
CviAII CATG 6 cut(s) 44, 61, 418, 655, 899, 917
CviQI GTAC 2 cut(s) 409, 868
DdeI CTNAG 2 cut(s) 183, 256
DpnI GATC 2 cut(s) 233, 557
DpnII GATC 2 cut(s) 231, 555
EaeI YGGCCR 1 cut(s) 814
Eam1104I CTCTTC 3 cut(s) 58, 614, 948
EarI CTCTTC 3 cut(s) 58, 614, 948
Eco130I CCWWGG 2 cut(s) 447, 654
Eco24I GRGCYC 2 cut(s) 533, 543
Eco31I GGTCTC 1 cut(s) 239
Eco32I GATATC 1 cut(s) 922
Eco47I GGWCC 2 cut(s) 670, 810
Eco57I CTGAAG 1 cut(s) 111
Eco88I CYCGRG 2 cut(s) 526, 581
Eco91I GGTNACC 1 cut(s) 520
EcoO109I RGGNCCY 2 cut(s) 539, 571
EcoO65I GGTNACC 1 cut(s) 520
EcoRII CCWGG 1 cut(s) 282
EcoRV GATATC 1 cut(s) 922
EcoT14I CCWWGG 2 cut(s) 447, 654
EcoT38I GRGCYC 2 cut(s) 533, 543
ErhI CCWWGG 2 cut(s) 447, 654
FaeI CATG 6 cut(s) 47, 64, 421, 658, 902, 920
FaqI GGGAC 1 cut(s) 574
FatI CATG 6 cut(s) 43, 60, 417, 654, 898, 916
Fnu4HI GCNGC 3 cut(s) 300, 369, 402
FriOI GRGCYC 2 cut(s) 533, 543
Fsp4HI GCNGC 3 cut(s) 300, 369, 402
FspBI CTAG 2 cut(s) 179, 440
GlaI GCGC 2 cut(s) 143, 400
GluI GCNGC 3 cut(s) 300, 369, 402
GsaI CCCAGC 3 cut(s) 750, 767, 785
HaeIII GGCC 9 cut(s) 19, 339, 531, 541, 572, 780, 801, 816, 838
HapII CCGG 4 cut(s) 326, 333, 527, 813
HgaI GACGC 2 cut(s) 230, 415
HhaI GCGC 2 cut(s) 144, 401
Hin1II CATG 6 cut(s) 47, 64, 421, 658, 902, 920
Hin6I GCGC 2 cut(s) 142, 399
HinP1I GCGC 2 cut(s) 142, 399
HincII GTYRAC 2 cut(s) 469, 890
HindII GTYRAC 2 cut(s) 469, 890
HinfI GANTC 2 cut(s) 304, 940
HpaI GTTAAC 1 cut(s) 469
HpaII CCGG 4 cut(s) 326, 333, 527, 813
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 3 cut(s) 409, 469, 890
Hpy188I TCNGA 2 cut(s) 76, 431
Hpy188III TCNNGA 6 cut(s) 333, 553, 559, 583, 715, 808
Hpy8I GTNNAC 3 cut(s) 409, 469, 890
Hpy99I CGWCG 1 cut(s) 431
HpyAV CCTTC 3 cut(s) 89, 400, 730
HpyCH4III ACNGT 3 cut(s) 517, 550, 733
HpyCH4IV ACGT 1 cut(s) 870
HpyCH4V TGCA 3 cut(s) 421, 507, 594
HpyF10VI GCNNNNNNNGC 4 cut(s) 179, 221, 296, 458
HpyF3I CTNAG 2 cut(s) 183, 256
HpySE526I ACGT 1 cut(s) 870
Hsp92II CATG 6 cut(s) 47, 64, 421, 658, 902, 920
HspAI GCGC 2 cut(s) 142, 399
Kpn2I TCCGGA 1 cut(s) 332
KspAI GTTAAC 1 cut(s) 469
Kzo9I GATC 2 cut(s) 231, 555
Lsp1109I GCAGC 2 cut(s) 380, 388
LweI GCATC 2 cut(s) 182, 390
MaeI CTAG 2 cut(s) 179, 440
MaeII ACGT 1 cut(s) 870
MaeIII GTNAC 2 cut(s) 520, 724
MalI GATC 2 cut(s) 233, 557
MboI GATC 2 cut(s) 231, 555
MfeI CAATTG 1 cut(s) 225
MhlI GDGCHC 2 cut(s) 533, 543
MluCI AATT 2 cut(s) 225, 312
MlyI GAGTC 1 cut(s) 934
MmeI TCCRAC 2 cut(s) 409, 664
MroI TCCGGA 1 cut(s) 332
MseI TTAA 2 cut(s) 68, 468
MslI CAYNNNNRTG 5 cut(s) 163, 200, 416, 704, 897
MspI CCGG 4 cut(s) 326, 333, 527, 813
MspR9I CCNGG 4 cut(s) 284, 326, 527, 528
MunI CAATTG 1 cut(s) 225
Mva1269I GAATGC 1 cut(s) 699
MvaI CCWGG 1 cut(s) 284
MvnI CGCG 3 cut(s) 144, 299, 399
MwoI GCNNNNNNNGC 4 cut(s) 179, 221, 296, 458
NciI CCSGG 3 cut(s) 326, 527, 528
NcoI CCATGG 1 cut(s) 654
NdeII GATC 2 cut(s) 231, 555
NlaIII CATG 6 cut(s) 47, 64, 421, 658, 902, 920
NlaIV GGNNCC 4 cut(s) 445, 531, 541, 800
NmeAIII GCCGAG 1 cut(s) 756
OliI CACNNNNGTG 2 cut(s) 163, 200
PaeR7I CTCGAG 1 cut(s) 581
PctI GAATGC 1 cut(s) 699
PfeI GAWTC 1 cut(s) 304
PflMI CCANNNNNTGG 1 cut(s) 655
PkrI GCNGC 3 cut(s) 301, 370, 403
PleI GAGTC 1 cut(s) 934
PpsI GAGTC 1 cut(s) 934
PshBI ATTAAT 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 282
PspEI GGTNACC 1 cut(s) 520
PspFI CCCAGC 3 cut(s) 746, 763, 781
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 4 cut(s) 445, 531, 541, 800
PspOMI GGGCCC 2 cut(s) 529, 539
RsaI GTAC 2 cut(s) 410, 869
RsaNI GTAC 2 cut(s) 409, 868
RseI CAYNNNNRTG 5 cut(s) 163, 200, 416, 704, 897
SaqAI TTAA 2 cut(s) 68, 468
SatI GCNGC 3 cut(s) 300, 369, 402
Sau3AI GATC 2 cut(s) 231, 555
SchI GAGTC 1 cut(s) 934
ScrFI CCNGG 4 cut(s) 284, 326, 527, 528
SduI GDGCHC 2 cut(s) 533, 543
SfaNI GCATC 2 cut(s) 182, 390
SfcI CTRYAG 1 cut(s) 216
Sfr274I CTCGAG 1 cut(s) 581
SinI GGWCC 2 cut(s) 670, 810
SlaI CTCGAG 1 cut(s) 581
SmaI CCCGGG 1 cut(s) 528
SmiMI CAYNNNNRTG 5 cut(s) 163, 200, 416, 704, 897
SmlI CTYRAG 2 cut(s) 455, 581
SmoI CTYRAG 2 cut(s) 455, 581
Sse9I AATT 2 cut(s) 225, 312
SsiI CCGC 3 cut(s) 299, 366, 640
SspMI CTAG 2 cut(s) 179, 440
StyD4I CCNGG 4 cut(s) 282, 324, 525, 526
StyI CCWWGG 2 cut(s) 447, 654
TaaI ACNGT 3 cut(s) 517, 550, 733
TaiI ACGT 1 cut(s) 873
TaqI TCGA 4 cut(s) 582, 617, 633, 716
TasI AATT 2 cut(s) 225, 312
TatI WGTACW 1 cut(s) 408
TauI GCSGC 1 cut(s) 302
TfiI GAWTC 1 cut(s) 304
Tru1I TTAA 2 cut(s) 68, 468
Tru9I TTAA 2 cut(s) 68, 468
TscAI CASTG 3 cut(s) 207, 378, 824
TseI GCWGC 2 cut(s) 368, 401
TspDTI ATGAA 3 cut(s) 32, 406, 773
TspMI CCCGGG 1 cut(s) 526
TspRI CASTG 3 cut(s) 207, 378, 824
Van91I CCANNNNNTGG 1 cut(s) 655
VpaK11BI GGWCC 2 cut(s) 670, 810
VspI ATTAAT 1 cut(s) 68
XhoI CTCGAG 1 cut(s) 581
XmaI CCCGGG 1 cut(s) 526
XspI CTAG 2 cut(s) 179, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.