Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004899

Physical Location & Seq

Genomic Coordinates Reverse (-)

7872316 .. 7873107

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1094600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAGGGTTCGCAAAAAGAAGGGATTCCTCTGTATGGAGGCAAGTATTTACAGTACAACATTCTGGGTAATCTCTTTGAAGTCTCCGCCAAGTATGCTCCTCCTATTCACCCAGTCGGTCGCGGTGCTTATGGCATCGTTTGCTGTGCAACAAACTCTGAGACAAAGGAAGAAGTTGCAGTCAAGAAGATTGGGAATGCATTTGACTATAGGATTGATGCGAAGAAGACGCTTCGAGAGATAGAACTCCTTTGCCATATGGATCATGACAATGTTATCAAAATTAAGGACATCATAAGGCCGGCAGATAGGGAAAAGTTCAATGATATTTACATTGTGTATGAATTGATGGACACTGACTTGAATCAGATAATAAACTCCAGCCAGGCTTTGATAGATGATCACTGTCAATATTTCCTGTATCAATTACTGCGAGGATTGAAGTACATACACTCTGCAAATGTTTTGCACCGCGATCTGAAACCAAGCAACCTGCTTCTCAGTGCAAATTGTGACCTTAAGATTTGTGACTTTGGGCTTGCAAGAACTACATCAGAGACAGATTTCATGACAGAATATGTTGTAACTCGTTGGTATCGAGCCCCTGAGTTACTACTCAACTGTTCAGAATACACCGGAGCAATTGATATTTGGTCATTAGGGTGCATCGTCATGGAGATTCTTAGGAGGGAACCACTGTTTCCCGGTAAAAACTATGTTCAGCAGTCGAGTCTTATAAATGGGCTCCTAGGTTCACCAGATGAATCAGATCTTGGTCTTTTAAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01521 ko01522 ko01524 ko04010 ko04011 ko04012 ko04013 ko04014 ko04015 ko04022 ko04024 ko04062 ko04066 ko04068 ko04071 ko04072 ko04114 ko04140 ko04150 ko04151 ko04210 ko04214 ko04218 ko04261 ko04270 ko04320 ko04350 ko04360 ko04370 ko04371 ko04380 ko04510 ko04520 ko04540 ko04550 ko04611 ko04620 ko04621 ko04650 ko04657 ko04658 ko04659 ko04660 ko04662 ko04664 ko04666 ko04668 ko04713 ko04720 ko04722 ko04723 ko04724 ko04725 ko04726 ko04730 ko04810 ko04910 ko04912 ko04914 ko04915 ko04916 ko04917 ko04919 ko04921 ko04926 ko04930 ko04933 ko04934 ko04960 ko05010 ko05020 ko05034 ko05131 ko05132 ko05133 ko05140 ko05142 ko05145 ko05152 ko05160 ko05161 ko05164 ko05165 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05213 ko05214 ko05215 ko05216 ko05218 ko05219 ko05220 ko05221 ko05223 ko05224 ko05225 ko05226 ko05230 ko05231 map01521 map01522 map01524 map04010 map04011 map04012 map04013 map04014 map04015 map04022 map04024 map04062 map04066 map04068 map04071 map04072 map04114 map04140 map04150 map04151 map04210 map04214 map04218 map04261 map04270 map04320 map04350 map04360 map04370 map04371 map04380 map04510 map04520 map04540 map04550 map04611 map04620 map04621 map04650 map04657 map04658 map04659 map04660 map04662 map04664 map04666 map04668 map04713 map04720 map04722 map04723 map04724 map04725 map04726 map04730 map04810 map04910 map04912 map04914 map04915 map04916 map04917 map04919 map04921 map04926 map04930 map04933 map04934 map04960 map05010 map05020 map05034 map05131 map05132 map05133 map05140 map05142 map05145 map05152 map05160 map05161 map05164 map05165 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05213 map05214 map05215 map05216 map05218 map05219 map05220 map05221 map05223 map05224 map05225 map05226 map05230 map05231

Pfam Domains

Protein Families

Pkinase

Protein Analysis

264

Amino Acids

29.89

Weight (kDa)

5.57

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	38 - 240	9.7e-60	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	38 - 229	2.8e-32	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07880 AT1G07880
fragaria_vesca	FvH4_3g34090 FvH4_3g34090 FvH4_3g34090
malus_domestica	MD03G1107700.v1.1 MD11G1094600.v1.1 MD11G1120700.v1.1
prunus_persica	Prupe.6G090400_v2.0.a1 Prupe.6G090400_v2.0.a1
pyrus_communis	pycom03g08700 pycom03g08730
rosa_chinensis	RchiOBHm_Chr1g0321061 RchiOBHm_Chr5g0028801 RchiOBHm_Chr5g0061751
rosa_laevigata	RLG00000035502
rosa_multiflora	Rmu_sc0003709.1_g000007 Rmu_sc0008679.1_g000023
rosa_roxburghii	Rroxscaffold_1G00018980 Rroxscaffold_2G00120040
rosa_rugosa	Rorug05G0343100 Rorug05G0343200
rosa_samantha	Rh4BG358900 Rh4CG373300 Rh5AG404300 Rh5BG417300 Rh5CG441800 Rh5DG431500
rosa_wichuraiana	Rw1G005890 Rw5G037980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	737
Acc36I	ACCTGC	1 cut(s)	501
AccII	CGCG	2 cut(s)	123, 474
AciI	CCGC	3 cut(s)	87, 123, 472
AclWI	GGATC	1 cut(s)	270
AfaI	GTAC	2 cut(s)	56, 446
AfiI	CCNNNNNNNGG	1 cut(s)	35
AflII	CTTAAG	1 cut(s)	518
AgsI	TTSAA	4 cut(s)	80, 322, 364, 442
AjnI	CCWGG	1 cut(s)	384
AjuI	GAANNNNNNNTTGG	2 cut(s)	756, 788
Alw26I	GTCTC	3 cut(s)	88, 155, 551
AlwI	GGATC	1 cut(s)	270
AoxI	GGCC	1 cut(s)	299
Asp700I	GAANNNNTTC	1 cut(s)	24
AspA2I	CCTAGG	1 cut(s)	748
AsuC2I	CCSGG	1 cut(s)	705
AsuHPI	GGTGA	2 cut(s)	101, 747
AvrII	CCTAGG	1 cut(s)	748
BanII	GRGCYC	2 cut(s)	604, 747
BbsI	GAAGAC	1 cut(s)	233
BccI	CCATC	1 cut(s)	343
BciT130I	CCWGG	1 cut(s)	386
BclI	TGATCA	1 cut(s)	400
BcnI	CCSGG	1 cut(s)	705
BcoDI	GTCTC	3 cut(s)	88, 155, 551
BfaI	CTAG	1 cut(s)	749
BfmI	CTRYAG	1 cut(s)	208
BfrI	CTTAAG	1 cut(s)	518
BfuAI	ACCTGC	1 cut(s)	501
BglII	AGATCT	1 cut(s)	769
BlnI	CCTAGG	1 cut(s)	748
Bme1390I	CCNGG	2 cut(s)	386, 705
BmiI	GGNNCC	2 cut(s)	693, 746
BmrFI	CCNGG	2 cut(s)	386, 705
BmrI	ACTGGG	1 cut(s)	107
BmsI	GCATC	3 cut(s)	144, 208, 675
BmuI	ACTGGG	1 cut(s)	107
BpiI	GAAGAC	1 cut(s)	233
BpmI	CTGGAG	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	705
BsaJI	CCNNGG	1 cut(s)	748
BsaWI	WCCGGW	1 cut(s)	635
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse118I	RCCGGY	1 cut(s)	301
Bse1I	ACTGG	1 cut(s)	113
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	1 cut(s)	748
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMII	CTCAG	3 cut(s)	150, 514, 597
BseNI	ACTGG	1 cut(s)	113
BseRI	GAGGAG	1 cut(s)	90
Bsh1236I	CGCG	2 cut(s)	123, 474
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	1 cut(s)	301
BsiEI	CGRYCG	1 cut(s)	121
BsiSI	CCGG	3 cut(s)	302, 636, 705
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	3 cut(s)	88, 155, 551
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	301
Bsp1286I	GDGCHC	2 cut(s)	604, 747
Bsp143I	GATC	4 cut(s)	262, 400, 475, 769
BspACI	CCGC	3 cut(s)	87, 123, 472
BspANI	GGCC	1 cut(s)	301
BspCNI	CTCAG	3 cut(s)	151, 513, 598
BspFNI	CGCG	2 cut(s)	123, 474
BspHI	TCATGA	2 cut(s)	265, 567
BspLI	GGNNCC	2 cut(s)	693, 746
BspMI	ACCTGC	1 cut(s)	501
BspPI	GGATC	1 cut(s)	270
BspTI	CTTAAG	1 cut(s)	518
BsrFI	RCCGGY	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	113
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	748
BssMI	GATC	4 cut(s)	262, 400, 475, 769
BssT1I	CCWWGG	1 cut(s)	748
Bst2UI	CCWGG	1 cut(s)	386
Bst4CI	ACNGT	4 cut(s)	54, 407, 623, 699
BstAFI	CTTAAG	1 cut(s)	518
BstAPI	GCANNNNNTGC	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	303, 540
BstDEI	CTNAG	4 cut(s)	159, 500, 606, 683
BstFNI	CGCG	2 cut(s)	123, 474
BstKTI	GATC	4 cut(s)	265, 403, 478, 772
BstMAI	GTCTC	3 cut(s)	88, 155, 551
BstMBI	GATC	4 cut(s)	262, 400, 475, 769
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 141
BstNI	CCWGG	1 cut(s)	386
BstSCI	CCNGG	2 cut(s)	384, 703
BstSFI	CTRYAG	1 cut(s)	208
BstUI	CGCG	2 cut(s)	123, 474
BstV2I	GAAGAC	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	769
BstYI	RGATCY	1 cut(s)	769
BsuRI	GGCC	1 cut(s)	301
BtsIMutI	CAGTG	4 cut(s)	354, 403, 508, 695
BveI	ACCTGC	1 cut(s)	501
Cac8I	GCNNGC	2 cut(s)	303, 540
CciI	TCATGA	2 cut(s)	265, 567
Cfr10I	RCCGGY	1 cut(s)	301
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	55, 445
CviAII	CATG	3 cut(s)	266, 568, 673
CviJI	RGCY	6 cut(s)	301, 384, 389, 538, 602, 745
CviKI_1	RGCY	6 cut(s)	301, 384, 389, 538, 602, 745
CviQI	GTAC	2 cut(s)	55, 445
DdeI	CTNAG	4 cut(s)	159, 500, 606, 683
DpnI	GATC	4 cut(s)	264, 402, 477, 771
DpnII	GATC	4 cut(s)	262, 400, 475, 769
DraI	TTTAAA	1 cut(s)	783
EciI	GGCGGA	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	748
Eco24I	GRGCYC	2 cut(s)	604, 747
EcoRII	CCWGG	1 cut(s)	384
EcoT14I	CCWWGG	1 cut(s)	748
EcoT22I	ATGCAT	1 cut(s)	202
EcoT38I	GRGCYC	2 cut(s)	604, 747
ErhI	CCWWGG	1 cut(s)	748
FaeI	CATG	3 cut(s)	269, 571, 676
FatI	CATG	3 cut(s)	265, 567, 672
FauNDI	CATATG	1 cut(s)	258
FbaI	TGATCA	1 cut(s)	400
FriOI	GRGCYC	2 cut(s)	604, 747
FspBI	CTAG	1 cut(s)	749
GsuI	CTGGAG	1 cut(s)	364
HaeIII	GGCC	1 cut(s)	301
HapII	CCGG	3 cut(s)	302, 636, 705
HgaI	GACGC	1 cut(s)	238
Hin1II	CATG	3 cut(s)	269, 571, 676
HinfI	GANTC	5 cut(s)	25, 364, 679, 730, 764
HpaII	CCGG	3 cut(s)	302, 636, 705
HphI	GGTGA	2 cut(s)	101, 747
Hpy166II	GTNNAC	1 cut(s)	755
Hpy188I	TCNGA	6 cut(s)	160, 369, 480, 556, 628, 769
Hpy188III	TCNNGA	4 cut(s)	184, 236, 266, 568
Hpy8I	GTNNAC	1 cut(s)	755
HpyAV	CCTTC	1 cut(s)	14
HpyCH4III	ACNGT	4 cut(s)	54, 407, 623, 699
HpyCH4V	TGCA	8 cut(s)	149, 179, 200, 458, 469, 506, 542, 666
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 141
HpyF3I	CTNAG	4 cut(s)	159, 500, 606, 683
Hsp92II	CATG	3 cut(s)	269, 571, 676
KroI	GCCGGC	1 cut(s)	301
KroNI	GCCGGC	1 cut(s)	303
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	4 cut(s)	262, 400, 475, 769
LmnI	GCTCC	3 cut(s)	103, 638, 750
LweI	GCATC	3 cut(s)	144, 208, 675
MaeI	CTAG	1 cut(s)	749
MaeIII	GTNAC	4 cut(s)	512, 527, 583, 609
MalI	GATC	4 cut(s)	264, 402, 477, 771
MboI	GATC	4 cut(s)	262, 400, 475, 769
MboII	GAAGA	4 cut(s)	182, 199, 235, 238
MfeI	CAATTG	1 cut(s)	642
MflI	RGATCY	1 cut(s)	769
MhlI	GDGCHC	2 cut(s)	604, 747
MluCI	AATT	5 cut(s)	282, 344, 425, 508, 642
MlyI	GAGTC	1 cut(s)	739
MnlI	CCTC	5 cut(s)	32, 39, 111, 428, 681
Mph1103I	ATGCAT	1 cut(s)	202
MroNI	GCCGGC	1 cut(s)	301
MroXI	GAANNNNTTC	1 cut(s)	24
MseI	TTAA	3 cut(s)	285, 519, 782
MslI	CAYNNNNRTG	3 cut(s)	270, 661, 671
MspCI	CTTAAG	1 cut(s)	518
MspI	CCGG	3 cut(s)	302, 636, 705
MspR9I	CCNGG	2 cut(s)	386, 705
MunI	CAATTG	1 cut(s)	642
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	386
MvnI	CGCG	2 cut(s)	123, 474
MwoI	GCNNNNNNNGC	2 cut(s)	95, 141
NaeI	GCCGGC	1 cut(s)	303
NciI	CCSGG	1 cut(s)	705
NdeI	CATATG	1 cut(s)	258
NdeII	GATC	4 cut(s)	262, 400, 475, 769
NgoMIV	GCCGGC	1 cut(s)	301
NlaIII	CATG	3 cut(s)	269, 571, 676
NlaIV	GGNNCC	2 cut(s)	693, 746
NmuCI	GTSAC	2 cut(s)	512, 527
NsiI	ATGCAT	1 cut(s)	202
PagI	TCATGA	2 cut(s)	265, 567
PcsI	WCGNNNNNNNCGW	1 cut(s)	595
PctI	GAATGC	1 cut(s)	202
PdiI	GCCGGC	1 cut(s)	303
PdmI	GAANNNNTTC	1 cut(s)	24
PfeI	GAWTC	4 cut(s)	25, 364, 679, 764
PleI	GAGTC	1 cut(s)	738
PpsI	GAGTC	1 cut(s)	738
PsiI	TTATAA	1 cut(s)	737
Psp6I	CCWGG	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	2 cut(s)	693, 746
PsuI	RGATCY	1 cut(s)	769
RsaI	GTAC	2 cut(s)	56, 446
RsaNI	GTAC	2 cut(s)	55, 445
RseI	CAYNNNNRTG	3 cut(s)	270, 661, 671
SaqAI	TTAA	3 cut(s)	285, 519, 782
Sau3AI	GATC	4 cut(s)	262, 400, 475, 769
SchI	GAGTC	1 cut(s)	739
ScrFI	CCNGG	2 cut(s)	386, 705
SduI	GDGCHC	2 cut(s)	604, 747
SetI	ASST	3 cut(s)	495, 519, 754
SfaNI	GCATC	3 cut(s)	144, 208, 675
SfcI	CTRYAG	1 cut(s)	208
SmiMI	CAYNNNNRTG	3 cut(s)	270, 661, 671
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	5 cut(s)	282, 344, 425, 508, 642
SsiI	CCGC	3 cut(s)	87, 123, 472
SspI	AATATT	1 cut(s)	413
SspMI	CTAG	1 cut(s)	749
StyD4I	CCNGG	2 cut(s)	384, 703
StyI	CCWWGG	1 cut(s)	748
TaaI	ACNGT	4 cut(s)	54, 407, 623, 699
TaqI	TCGA	3 cut(s)	235, 598, 728
TaqII	GACCGA	1 cut(s)	107
TasI	AATT	5 cut(s)	282, 344, 425, 508, 642
TatI	WGTACW	2 cut(s)	54, 444
TfiI	GAWTC	4 cut(s)	25, 364, 679, 764
Tru1I	TTAA	3 cut(s)	285, 519, 782
Tru9I	TTAA	3 cut(s)	285, 519, 782
TscAI	CASTG	4 cut(s)	361, 410, 508, 702
TseFI	GTSAC	2 cut(s)	512, 527
Tsp45I	GTSAC	2 cut(s)	512, 527
TspDTI	ATGAA	3 cut(s)	357, 556, 777
TspRI	CASTG	4 cut(s)	361, 410, 508, 702
Vha464I	CTTAAG	1 cut(s)	518
XmaJI	CCTAGG	1 cut(s)	748
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	1 cut(s)	749
Zsp2I	ATGCAT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.