RchiOBHm_Chr5g0028801

mitogen-activated protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0004899
Physical Location & Seq
Reverse (-)
22611663 .. 22611917
255 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30821

Sequence Viewer

Length: 255 bp
ATGCTTCTCAATGCAAATTATGACCTTAAGATTTATGACTCTGGGCTTGCAAGAAATACACCTGAGACAGATTTCATGACAGAATATGTTGTCACTCGTTGGTACCGAGCCCCAGAATTACTACTCAACCGTTCCGAATATACTGCGGCTATTGATATTTGGTCAAATGAACATGAAGGAGATGGTCCGGGAAGGCAAGAAATGGAGGTGTTAAGAAGTGCAATTGCACAAAGTCTAATGAATGCATCTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko01522 ko01524 ko04010 ko04011 ko04012 ko04013 ko04014 ko04015 ko04022 ko04024 ko04062 ko04066 ko04068 ko04071 ko04072 ko04114 ko04140 ko04150 ko04151 ko04210 ko04214 ko04218 ko04261 ko04270 ko04320 ko04350 ko04360 ko04370 ko04371 ko04380 ko04510 ko04520 ko04540 ko04550 ko04611 ko04620 ko04621 ko04650 ko04657 ko04658 ko04659 ko04660 ko04662 ko04664 ko04666 ko04668 ko04713 ko04720 ko04722 ko04723 ko04724 ko04725 ko04726 ko04730 ko04810 ko04910 ko04912 ko04914 ko04915 ko04916 ko04917 ko04919 ko04921 ko04926 ko04930 ko04933 ko04934 ko04960 ko05010 ko05020 ko05034 ko05131 ko05132 ko05133 ko05140 ko05142 ko05145 ko05152 ko05160 ko05161 ko05164 ko05165 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05213 ko05214 ko05215 ko05216 ko05218 ko05219 ko05220 ko05221 ko05223 ko05224 ko05225 ko05226 ko05230 ko05231 map01521 map01522 map01524 map04010 map04011 map04012 map04013 map04014 map04015 map04022 map04024 map04062 map04066 map04068 map04071 map04072 map04114 map04140 map04150 map04151 map04210 map04214 map04218 map04261 map04270 map04320 map04350 map04360 map04370 map04371 map04380 map04510 map04520 map04540 map04550 map04611 map04620 map04621 map04650 map04657 map04658 map04659 map04660 map04662 map04664 map04666 map04668 map04713 map04720 map04722 map04723 map04724 map04725 map04726 map04730 map04810 map04910 map04912 map04914 map04915 map04916 map04917 map04919 map04921 map04926 map04930 map04933 map04934 map04960 map05010 map05020 map05034 map05131 map05132 map05133 map05140 map05142 map05145 map05152 map05160 map05161 map05164 map05165 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05213 map05214 map05215 map05216 map05218 map05219 map05220 map05221 map05223 map05224 map05225 map05226 map05230 map05231
Pfam Domains
Protein Families
Pkinase

Protein Analysis

84

Amino Acids

9.62

Weight (kDa)

4.52

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 55 3e-12 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 102
AccB1I GGYRCC 1 cut(s) 102
AciI CCGC 1 cut(s) 146
AfaI GTAC 1 cut(s) 104
AflII CTTAAG 1 cut(s) 26
Alw26I GTCTC 1 cut(s) 59
Asp718I GGTACC 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 185
AsuC2I CCSGG 1 cut(s) 189
AvaII GGWCC 1 cut(s) 185
BanI GGYRCC 1 cut(s) 102
BanII GRGCYC 1 cut(s) 112
BccI CCATC 1 cut(s) 176
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BcnI CCSGG 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 59
BfrI CTTAAG 1 cut(s) 26
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 189
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 189
BpuMI CCSGG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 54
BshNI GGYRCC 1 cut(s) 102
BsiSI CCGG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 59
BsmI GAATGC 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 112
BspACI CCGC 1 cut(s) 146
BspCNI CTCAG 1 cut(s) 55
BspHI TCATGA 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 102
BspTI CTTAAG 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 131
BstAFI CTTAAG 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 2 cut(s) 63, 252
BstMAI GTCTC 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 187
Cac8I GCNNGC 1 cut(s) 48
CciI TCATGA 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 103
CviAII CATG 2 cut(s) 76, 173
CviJI RGCY 3 cut(s) 46, 110, 149
CviKI_1 RGCY 3 cut(s) 46, 110, 149
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 2 cut(s) 63, 252
Eco24I GRGCYC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 185
EcoT22I ATGCAT 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 112
FaeI CATG 2 cut(s) 79, 176
FaiI YATR 6 cut(s) 21, 36, 77, 87, 141, 174
FatI CATG 2 cut(s) 75, 172
Fnu4HI GCNGC 1 cut(s) 147
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 147
HapII CCGG 1 cut(s) 188
Hin1II CATG 2 cut(s) 79, 176
HinfI GANTC 1 cut(s) 38
HpaII CCGG 1 cut(s) 188
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 76
HpyAV CCTTC 2 cut(s) 170, 186
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4V TGCA 5 cut(s) 14, 50, 221, 227, 245
HpyF3I CTNAG 2 cut(s) 63, 252
Hsp92II CATG 2 cut(s) 79, 176
KpnI GGTACC 1 cut(s) 106
LpnPI CCDG 4 cut(s) 27, 75, 126, 201
MaeIII GTNAC 1 cut(s) 91
MfeI CAATTG 1 cut(s) 222
MhlI GDGCHC 1 cut(s) 112
MluCI AATT 3 cut(s) 16, 116, 222
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 1 cut(s) 199
Mph1103I ATGCAT 1 cut(s) 247
MseI TTAA 2 cut(s) 27, 212
MspCI CTTAAG 1 cut(s) 26
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 189
MunI CAATTG 1 cut(s) 222
Mva1269I GAATGC 1 cut(s) 247
NciI CCSGG 1 cut(s) 189
NlaIII CATG 2 cut(s) 79, 176
NlaIV GGNNCC 1 cut(s) 104
NmuCI GTSAC 1 cut(s) 91
NsiI ATGCAT 1 cut(s) 247
PagI TCATGA 1 cut(s) 75
PcsI WCGNNNNNNNCGW 1 cut(s) 103
PctI GAATGC 1 cut(s) 247
PfoI TCCNGGA 1 cut(s) 187
PkrI GCNGC 1 cut(s) 148
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 104
PspPI GGNCC 1 cut(s) 185
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SaqAI TTAA 2 cut(s) 27, 212
SatI GCNGC 1 cut(s) 147
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 189
SduI GDGCHC 1 cut(s) 112
SetI ASST 3 cut(s) 27, 64, 210
SinI GGWCC 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 3 cut(s) 16, 116, 222
SsiI CCGC 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 187
TaaI ACNGT 1 cut(s) 131
TasI AATT 3 cut(s) 16, 116, 222
TauI GCSGC 1 cut(s) 149
Tru1I TTAA 2 cut(s) 27, 212
Tru9I TTAA 2 cut(s) 27, 212
TseFI GTSAC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 4 cut(s) 64, 183, 189, 254
Vha464I CTTAAG 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 185
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.