Rmu_sc0008679.1_g000023

mitogen-activated protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008679.1
OG0004899
Physical Location & Seq
Forward (+)
78453 .. 80192
1740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008679.1_g000023.1.cds

Sequence Viewer

Length: 357 bp
ctggttcaagcatcaatctatgatgaggataggttgagagagcagcgtcttctccagattgtaaagtactttctgtatcaattgcttcagggattgaagtacatacactctgcatatgttttacaccgtgatctgaaaccaagcaatctgcttctcaatgcaaattgtgaccttaagatttgtgacttcgggtttgcaagaactacatctgagacagatttcatgacagaatatgttgtcactcgttccgagccccagaattactactcaattgtttcgaatacactgcagctatggatatttggtcaaatgaagatgaaggagatggtccgggaagacaagaaatggaggtgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko01522 ko01524 ko04010 ko04011 ko04012 ko04013 ko04014 ko04015 ko04022 ko04024 ko04062 ko04066 ko04068 ko04071 ko04072 ko04114 ko04140 ko04150 ko04151 ko04210 ko04214 ko04218 ko04261 ko04270 ko04320 ko04350 ko04360 ko04370 ko04371 ko04380 ko04510 ko04520 ko04540 ko04550 ko04611 ko04620 ko04621 ko04650 ko04657 ko04658 ko04659 ko04660 ko04662 ko04664 ko04666 ko04668 ko04713 ko04720 ko04722 ko04723 ko04724 ko04725 ko04726 ko04730 ko04810 ko04910 ko04912 ko04914 ko04915 ko04916 ko04917 ko04919 ko04921 ko04926 ko04930 ko04933 ko04934 ko04960 ko05010 ko05020 ko05034 ko05131 ko05132 ko05133 ko05140 ko05142 ko05145 ko05152 ko05160 ko05161 ko05164 ko05165 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05213 ko05214 ko05215 ko05216 ko05218 ko05219 ko05220 ko05221 ko05223 ko05224 ko05225 ko05226 ko05230 ko05231 map01521 map01522 map01524 map04010 map04011 map04012 map04013 map04014 map04015 map04022 map04024 map04062 map04066 map04068 map04071 map04072 map04114 map04140 map04150 map04151 map04210 map04214 map04218 map04261 map04270 map04320 map04350 map04360 map04370 map04371 map04380 map04510 map04520 map04540 map04550 map04611 map04620 map04621 map04650 map04657 map04658 map04659 map04660 map04662 map04664 map04666 map04668 map04713 map04720 map04722 map04723 map04724 map04725 map04726 map04730 map04810 map04910 map04912 map04914 map04915 map04916 map04917 map04919 map04921 map04926 map04930 map04933 map04934 map04960 map05010 map05020 map05034 map05131 map05132 map05133 map05140 map05142 map05145 map05152 map05160 map05161 map05164 map05165 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05213 map05214 map05215 map05216 map05218 map05219 map05220 map05221 map05223 map05224 map05225 map05226 map05230 map05231
Pfam Domains
Protein Families
Pkinase

Protein Analysis

118

Amino Acids

14.17

Weight (kDa)

8.45

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 2 cut(s) 68, 101
AflII CTTAAG 1 cut(s) 173
AgsI TTSAA 2 cut(s) 8, 97
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
Alw26I GTCTC 1 cut(s) 206
ApeKI GCWGC 2 cut(s) 43, 289
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
AspS9I GGNCC 1 cut(s) 328
AsuC2I CCSGG 1 cut(s) 332
AsuII TTCGAA 1 cut(s) 278
AvaII GGWCC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 255
BbsI GAAGAC 2 cut(s) 41, 342
BbvI GCAGC 2 cut(s) 55, 301
BccI CCATC 1 cut(s) 319
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BcnI CCSGG 1 cut(s) 332
BcoDI GTCTC 1 cut(s) 206
BfmI CTRYAG 1 cut(s) 287
BfrI CTTAAG 1 cut(s) 173
BisI GCNGC 2 cut(s) 44, 290
BlsI GCNGC 2 cut(s) 45, 291
BmcAI AGTACT 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 332
Bme18I GGWCC 1 cut(s) 328
BmgT120I GGNCC 1 cut(s) 328
BmrFI CCNGG 1 cut(s) 332
BmsI GCATC 1 cut(s) 20
BpiI GAAGAC 2 cut(s) 41, 342
BpmI CTGGAG 1 cut(s) 38
Bpu14I TTCGAA 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 332
BseMII CTCAG 1 cut(s) 201
BseXI GCAGC 2 cut(s) 55, 301
BsiSI CCGG 1 cut(s) 331
BsmAI GTCTC 1 cut(s) 206
Bsp119I TTCGAA 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 1 cut(s) 130
BspCNI CTCAG 1 cut(s) 202
BspHI TCATGA 1 cut(s) 222
BspMAI CTGCAG 1 cut(s) 291
BspT104I TTCGAA 1 cut(s) 278
BspTI CTTAAG 1 cut(s) 173
BssMI GATC 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 128
BstAFI CTTAAG 1 cut(s) 173
BstBI TTCGAA 1 cut(s) 278
BstDEI CTNAG 1 cut(s) 210
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 330
BstSFI CTRYAG 1 cut(s) 287
BstV1I GCAGC 2 cut(s) 55, 301
BstV2I GAAGAC 2 cut(s) 41, 342
BtsI GCAGTG 1 cut(s) 284
BtsIMutI CAGTG 1 cut(s) 284
CciI TCATGA 1 cut(s) 222
Cfr13I GGNCC 1 cut(s) 328
CseI GACGC 1 cut(s) 35
Csp6I GTAC 2 cut(s) 67, 100
CviAII CATG 1 cut(s) 223
CviJI RGCY 2 cut(s) 253, 292
CviKI_1 RGCY 2 cut(s) 253, 292
CviQI GTAC 2 cut(s) 67, 100
DdeI CTNAG 1 cut(s) 210
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 71
EcoT38I GRGCYC 1 cut(s) 255
FaeI CATG 1 cut(s) 226
FaiI YATR 7 cut(s) 21, 104, 115, 117, 224, 234, 295
FatI CATG 1 cut(s) 222
FauNDI CATATG 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 44, 290
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 2 cut(s) 44, 290
GluI GCNGC 2 cut(s) 44, 290
GsuI CTGGAG 1 cut(s) 38
HapII CCGG 1 cut(s) 331
HgaI GACGC 1 cut(s) 35
Hin1II CATG 1 cut(s) 226
HpaII CCGG 1 cut(s) 331
Hpy188I TCNGA 3 cut(s) 135, 211, 250
Hpy188III TCNNGA 2 cut(s) 55, 223
HpyAV CCTTC 1 cut(s) 313
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 4 cut(s) 113, 161, 197, 289
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 1 cut(s) 226
Kzo9I GATC 1 cut(s) 130
LpnPI CCDG 4 cut(s) 68, 74, 269, 344
Lsp1109I GCAGC 2 cut(s) 55, 301
LweI GCATC 1 cut(s) 20
MaeIII GTNAC 3 cut(s) 167, 182, 238
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 3 cut(s) 41, 325, 347
MfeI CAATTG 2 cut(s) 80, 270
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 4 cut(s) 80, 163, 259, 270
MnlI CCTC 2 cut(s) 19, 342
MseI TTAA 2 cut(s) 174, 355
MspCI CTTAAG 1 cut(s) 173
MspI CCGG 1 cut(s) 331
MspR9I CCNGG 1 cut(s) 332
MunI CAATTG 2 cut(s) 80, 270
NciI CCSGG 1 cut(s) 332
NdeI CATATG 1 cut(s) 115
NdeII GATC 1 cut(s) 130
NlaIII CATG 1 cut(s) 226
NmuCI GTSAC 3 cut(s) 167, 182, 238
NspV TTCGAA 1 cut(s) 278
PagI TCATGA 1 cut(s) 222
PfoI TCCNGGA 1 cut(s) 330
PkrI GCNGC 2 cut(s) 45, 291
PspPI GGNCC 1 cut(s) 328
PstI CTGCAG 1 cut(s) 291
RsaI GTAC 2 cut(s) 68, 101
RsaNI GTAC 2 cut(s) 67, 100
SaqAI TTAA 2 cut(s) 174, 355
SatI GCNGC 2 cut(s) 44, 290
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 1 cut(s) 328
ScaI AGTACT 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 332
SduI GDGCHC 1 cut(s) 255
SetI ASST 4 cut(s) 35, 174, 294, 353
SfaNI GCATC 1 cut(s) 20
SfcI CTRYAG 1 cut(s) 287
SfuI TTCGAA 1 cut(s) 278
SinI GGWCC 1 cut(s) 328
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 4 cut(s) 80, 163, 259, 270
StyD4I CCNGG 1 cut(s) 330
TaaI ACNGT 1 cut(s) 128
TaqI TCGA 1 cut(s) 278
TasI AATT 4 cut(s) 80, 163, 259, 270
TatI WGTACW 2 cut(s) 66, 99
Tru1I TTAA 2 cut(s) 174, 355
Tru9I TTAA 2 cut(s) 174, 355
TscAI CASTG 1 cut(s) 291
TseFI GTSAC 3 cut(s) 167, 182, 238
TseI GCWGC 2 cut(s) 43, 289
Tsp45I GTSAC 3 cut(s) 167, 182, 238
TspDTI ATGAA 3 cut(s) 211, 326, 332
TspRI CASTG 1 cut(s) 291
Vha464I CTTAAG 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 328
ZrmI AGTACT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.