Rorug05G0343200

mitogen-activated protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004899
Physical Location & Seq
Forward (+)
42127988 .. 42128812
825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0343200.1

Sequence Viewer

Length: 825 bp
ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTACGTCAAGGGATTTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGCCTCCAGCTGAACCAGTATGGACATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGGGAACTAGTTCTCTTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTCAACTTTGGTTCCACCTATTCTACTGGTAATGAAGGATTTCTTGATTTAAATTTTGTTTCATATTCTTCCTCACCCTTCAATACTAATACCAGTACAACTCTTTTGGCACAACAGGAGGACGAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTGAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCCGAAGACTACATCCGAGGAAGGTAGCGTATTTGGTTACTATTCTGGTGGCTCAGGCGGTTACAACAGTGGCTCTAACGTTTCTCTTGAGCTCAGCCTCAATCCATCCGGAGCTGCTGACTAGGCTTAGCATAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko01522 ko01524 ko04010 ko04011 ko04012 ko04013 ko04014 ko04015 ko04022 ko04024 ko04062 ko04066 ko04068 ko04071 ko04072 ko04114 ko04140 ko04150 ko04151 ko04210 ko04214 ko04218 ko04261 ko04270 ko04320 ko04350 ko04360 ko04370 ko04371 ko04380 ko04510 ko04520 ko04540 ko04550 ko04611 ko04620 ko04621 ko04650 ko04657 ko04658 ko04659 ko04660 ko04662 ko04664 ko04666 ko04668 ko04713 ko04720 ko04722 ko04723 ko04724 ko04725 ko04726 ko04730 ko04810 ko04910 ko04912 ko04914 ko04915 ko04916 ko04917 ko04919 ko04921 ko04926 ko04930 ko04933 ko04934 ko04960 ko05010 ko05020 ko05034 ko05131 ko05132 ko05133 ko05140 ko05142 ko05145 ko05152 ko05160 ko05161 ko05164 ko05165 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05213 ko05214 ko05215 ko05216 ko05218 ko05219 ko05220 ko05221 ko05223 ko05224 ko05225 ko05226 ko05230 ko05231 map01521 map01522 map01524 map04010 map04011 map04012 map04013 map04014 map04015 map04022 map04024 map04062 map04066 map04068 map04071 map04072 map04114 map04140 map04150 map04151 map04210 map04214 map04218 map04261 map04270 map04320 map04350 map04360 map04370 map04371 map04380 map04510 map04520 map04540 map04550 map04611 map04620 map04621 map04650 map04657 map04658 map04659 map04660 map04662 map04664 map04666 map04668 map04713 map04720 map04722 map04723 map04724 map04725 map04726 map04730 map04810 map04910 map04912 map04914 map04915 map04916 map04917 map04919 map04921 map04926 map04930 map04933 map04934 map04960 map05010 map05020 map05034 map05131 map05132 map05133 map05140 map05142 map05145 map05152 map05160 map05161 map05164 map05165 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05213 map05214 map05215 map05216 map05218 map05219 map05220 map05221 map05223 map05224 map05225 map05226 map05230 map05231
Pfam Domains
Protein Families
Pkinase

Protein Analysis

274

Amino Acids

30.07

Weight (kDa)

6.08

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 2.9e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 677
AccB7I CCANNNNNTGG 1 cut(s) 413
AccIII TCCGGA 1 cut(s) 793
AciI CCGC 1 cut(s) 743
AclI AACGTT 1 cut(s) 764
AclWI GGATC 8 cut(s) 141, 330, 343, 378, 391, 411, 424, 459
AcsI RAATTY 1 cut(s) 526
AcyI GRCGYC 1 cut(s) 674
AfaI GTAC 3 cut(s) 91, 328, 571
AfiI CCNNNNNNNGG 2 cut(s) 413, 664
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 2 cut(s) 556, 640
AhlI ACTAGT 2 cut(s) 314, 443
AjnI CCWGG 2 cut(s) 92, 629
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 5 cut(s) 53, 199, 410, 777, 799
AluI AGCT 5 cut(s) 53, 199, 410, 777, 799
Alw21I GWGCWC 3 cut(s) 177, 665, 779
Alw44I GTGCAC 1 cut(s) 661
AlwI GGATC 8 cut(s) 141, 330, 343, 378, 391, 411, 424, 459
Ama87I CYCGRG 1 cut(s) 261
Aor13HI TCCGGA 1 cut(s) 793
AoxI GGCC 1 cut(s) 404
ApaLI GTGCAC 1 cut(s) 661
ApeKI GCWGC 3 cut(s) 50, 293, 799
ApoI RAATTY 1 cut(s) 526
ArsI GACNNNNNNTTYG 4 cut(s) 383, 415, 416, 448
Asp700I GAANNNNTTC 3 cut(s) 316, 513, 644
AspS9I GGNCC 3 cut(s) 357, 404, 438
AsuHPI GGTGA 2 cut(s) 540, 619
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 2 cut(s) 357, 438
BaeGI GKGCMC 3 cut(s) 164, 306, 665
BamHI GGATCC 3 cut(s) 335, 383, 416
BanII GRGCYC 2 cut(s) 262, 779
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 697
Bbv12I GWGCWC 3 cut(s) 177, 665, 779
BbvI GCAGC 3 cut(s) 62, 280, 786
BccI CCATC 3 cut(s) 395, 452, 798
BceAI ACGGC 2 cut(s) 72, 681
BciT130I CCWGG 2 cut(s) 94, 631
BcuI ACTAGT 2 cut(s) 314, 443
BfaI CTAG 3 cut(s) 315, 444, 807
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 186
BisI GCNGC 3 cut(s) 51, 294, 800
BlpI GCTNAGC 2 cut(s) 778, 812
BlsI GCNGC 3 cut(s) 52, 295, 801
Bme1390I CCNGG 2 cut(s) 94, 631
Bme18I GGWCC 2 cut(s) 357, 438
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 3 cut(s) 357, 404, 438
BmiI GGNNCC 8 cut(s) 6, 245, 337, 358, 385, 418, 439, 487
BmrFI CCNGG 2 cut(s) 94, 631
BpiI GAAGAC 1 cut(s) 697
BpmI CTGGAG 3 cut(s) 93, 179, 282
Bpu10I CCTNAGC 1 cut(s) 738
Bpu1102I GCTNAGC 2 cut(s) 778, 812
BpuEI CTTGAG 2 cut(s) 113, 793
BsaHI GRCGYC 1 cut(s) 674
BsaJI CCNNGG 2 cut(s) 306, 701
BsaWI WCCGGW 1 cut(s) 793
Bsc4I CCNNNNNNNGG 2 cut(s) 413, 664
Bse1I ACTGG 7 cut(s) 205, 299, 334, 367, 376, 505, 567
BseAI TCCGGA 1 cut(s) 793
BseBI CCWGG 2 cut(s) 94, 631
BseDI CCNNGG 2 cut(s) 306, 701
BseGI GGATG 3 cut(s) 601, 697, 790
BseLI CCNNNNNNNGG 2 cut(s) 413, 664
BseMII CTCAG 2 cut(s) 752, 792
BseNI ACTGG 7 cut(s) 205, 299, 334, 367, 376, 505, 567
BseRI GAGGAG 3 cut(s) 44, 632, 635
BseSI GKGCMC 3 cut(s) 164, 306, 665
BseXI GCAGC 3 cut(s) 62, 280, 786
BshFI GGCC 1 cut(s) 406
BsiHKAI GWGCWC 3 cut(s) 177, 665, 779
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 794
BslI CCNNNNNNNGG 2 cut(s) 413, 664
BsnI GGCC 1 cut(s) 406
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 6 cut(s) 164, 177, 262, 306, 665, 779
Bsp13I TCCGGA 1 cut(s) 793
Bsp143I GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
Bsp1720I GCTNAGC 2 cut(s) 778, 812
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 1 cut(s) 743
BspANI GGCC 1 cut(s) 406
BspCNI CTCAG 2 cut(s) 751, 791
BspEI TCCGGA 1 cut(s) 793
BspLI GGNNCC 8 cut(s) 6, 245, 337, 358, 385, 418, 439, 487
BspPI GGATC 8 cut(s) 141, 330, 343, 378, 391, 411, 424, 459
BsrI ACTGG 7 cut(s) 205, 299, 334, 367, 376, 505, 567
BssECI CCNNGG 2 cut(s) 306, 701
BssMI GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
BssNI GRCGYC 1 cut(s) 674
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 94, 631
Bst4CI ACNGT 1 cut(s) 754
Bst6I CTCTTC 1 cut(s) 650
BstACI GRCGYC 1 cut(s) 674
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 3 cut(s) 738, 778, 812
BstDSI CCRYGG 1 cut(s) 306
BstEII GGTNACC 1 cut(s) 682
BstF5I GGATG 3 cut(s) 601, 697, 790
BstKTI GATC 9 cut(s) 136, 189, 338, 346, 386, 419, 467, 475, 627
BstMBI GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
BstMWI GCNNNNNNNGC 1 cut(s) 808
BstNI CCWGG 2 cut(s) 94, 631
BstNSI RCATGY 1 cut(s) 218
BstPI GGTNACC 1 cut(s) 682
BstSCI CCNGG 2 cut(s) 92, 629
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 3 cut(s) 164, 306, 665
BstV1I GCAGC 3 cut(s) 62, 280, 786
BstV2I GAAGAC 1 cut(s) 697
BstX2I RGATCY 6 cut(s) 133, 186, 335, 383, 416, 464
BstXI CCANNNNNNTGG 1 cut(s) 53
BstYI RGATCY 6 cut(s) 133, 186, 335, 383, 416, 464
BsuRI GGCC 1 cut(s) 406
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 3 cut(s) 601, 697, 790
BtsIMutI CAGTG 3 cut(s) 306, 360, 759
Cac8I GCNNGC 1 cut(s) 408
Cfr13I GGNCC 3 cut(s) 357, 404, 438
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 3 cut(s) 90, 327, 570
CviAII CATG 3 cut(s) 70, 215, 307
CviQI GTAC 3 cut(s) 90, 327, 570
DdeI CTNAG 3 cut(s) 738, 778, 812
DpnI GATC 9 cut(s) 135, 188, 337, 345, 385, 418, 466, 474, 626
DpnII GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
DraI TTTAAA 1 cut(s) 525
Eam1104I CTCTTC 1 cut(s) 650
EarI CTCTTC 1 cut(s) 650
Ecl136II GAGCTC 1 cut(s) 777
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 262, 779
Eco47I GGWCC 2 cut(s) 357, 438
Eco53kI GAGCTC 1 cut(s) 777
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 682
EcoICRI GAGCTC 1 cut(s) 777
EcoO65I GGTNACC 1 cut(s) 682
EcoRII CCWGG 2 cut(s) 92, 629
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 262, 779
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 3 cut(s) 73, 218, 310
FaiI YATR 7 cut(s) 71, 210, 216, 308, 538, 818, 823
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FatI CATG 3 cut(s) 69, 214, 306
Fnu4HI GCNGC 3 cut(s) 51, 294, 800
FokI GGATG 3 cut(s) 588, 684, 777
FriOI GRGCYC 2 cut(s) 262, 779
Fsp4HI GCNGC 3 cut(s) 51, 294, 800
FspBI CTAG 3 cut(s) 315, 444, 807
GluI GCNGC 3 cut(s) 51, 294, 800
GsuI CTGGAG 3 cut(s) 93, 179, 282
HaeIII GGCC 1 cut(s) 406
HapII CCGG 1 cut(s) 794
Hin1I GRCGYC 1 cut(s) 674
Hin1II CATG 3 cut(s) 73, 218, 310
HinfI GANTC 2 cut(s) 100, 123
HpaII CCGG 1 cut(s) 794
HphI GGTGA 2 cut(s) 540, 619
Hpy166II GTNNAC 3 cut(s) 360, 441, 663
Hpy188I TCNGA 1 cut(s) 702
Hpy188III TCNNGA 7 cut(s) 110, 182, 247, 263, 518, 772, 794
Hpy8I GTNNAC 3 cut(s) 360, 441, 663
HpyAV CCTTC 3 cut(s) 503, 562, 700
HpyCH4III ACNGT 1 cut(s) 754
HpyCH4IV ACGT 4 cut(s) 144, 252, 674, 764
HpyCH4V TGCA 2 cut(s) 609, 663
HpyF10VI GCNNNNNNNGC 1 cut(s) 808
HpyF3I CTNAG 3 cut(s) 738, 778, 812
HpySE526I ACGT 4 cut(s) 144, 252, 674, 764
Hsp92I GRCGYC 1 cut(s) 674
Hsp92II CATG 3 cut(s) 73, 218, 310
Kpn2I TCCGGA 1 cut(s) 793
Kzo9I GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
LmnI GCTCC 2 cut(s) 301, 796
Lsp1109I GCAGC 3 cut(s) 62, 280, 786
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 3 cut(s) 315, 444, 807
MaeII ACGT 4 cut(s) 144, 252, 674, 764
MaeIII GTNAC 3 cut(s) 682, 721, 745
MalI GATC 9 cut(s) 135, 188, 337, 345, 385, 418, 466, 474, 626
MboI GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
MboII GAAGA 3 cut(s) 534, 637, 702
MflI RGATCY 6 cut(s) 133, 186, 335, 383, 416, 464
MhlI GDGCHC 6 cut(s) 164, 177, 262, 306, 665, 779
MluCI AATT 4 cut(s) 349, 397, 430, 526
MroI TCCGGA 1 cut(s) 793
MroXI GAANNNNTTC 3 cut(s) 316, 513, 644
MseI TTAA 2 cut(s) 156, 524
MspA1I CMGCKG 3 cut(s) 53, 199, 410
MspI CCGG 1 cut(s) 794
MspR9I CCNGG 2 cut(s) 94, 631
MvaI CCWGG 2 cut(s) 94, 631
MwoI GCNNNNNNNGC 1 cut(s) 808
NcoI CCATGG 1 cut(s) 306
NdeII GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
NlaIII CATG 3 cut(s) 73, 218, 310
NlaIV GGNNCC 8 cut(s) 6, 245, 337, 358, 385, 418, 439, 487
NspI RCATGY 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 261
PciI ACATGT 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 671
PdmI GAANNNNTTC 3 cut(s) 316, 513, 644
PfeI GAWTC 2 cut(s) 100, 123
PflMI CCANNNNNTGG 1 cut(s) 413
PkrI GCNGC 3 cut(s) 52, 295, 801
PscI ACATGT 1 cut(s) 214
Psp124BI GAGCTC 1 cut(s) 779
Psp1406I AACGTT 1 cut(s) 764
Psp6I CCWGG 2 cut(s) 92, 629
PspEI GGTNACC 1 cut(s) 682
PspGI CCWGG 2 cut(s) 92, 629
PspN4I GGNNCC 8 cut(s) 6, 245, 337, 358, 385, 418, 439, 487
PspPI GGNCC 3 cut(s) 357, 404, 438
PsuI RGATCY 6 cut(s) 133, 186, 335, 383, 416, 464
PvuII CAGCTG 3 cut(s) 53, 199, 410
RsaI GTAC 3 cut(s) 91, 328, 571
RsaNI GTAC 3 cut(s) 90, 327, 570
SacI GAGCTC 1 cut(s) 779
SaqAI TTAA 2 cut(s) 156, 524
SatI GCNGC 3 cut(s) 51, 294, 800
Sau3AI GATC 9 cut(s) 133, 186, 335, 343, 383, 416, 464, 472, 624
Sau96I GGNCC 3 cut(s) 357, 404, 438
ScrFI CCNGG 2 cut(s) 94, 631
SduI GDGCHC 6 cut(s) 164, 177, 262, 306, 665, 779
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 2 cut(s) 357, 438
SlaI CTCGAG 1 cut(s) 261
SmiI ATTTAAAT 1 cut(s) 525
SmlI CTYRAG 3 cut(s) 128, 261, 772
SmoI CTYRAG 3 cut(s) 128, 261, 772
SpeI ACTAGT 2 cut(s) 314, 443
Sse9I AATT 4 cut(s) 349, 397, 430, 526
SsiI CCGC 1 cut(s) 743
SspMI CTAG 3 cut(s) 315, 444, 807
SstI GAGCTC 1 cut(s) 779
StyD4I CCNGG 2 cut(s) 92, 629
StyI CCWWGG 1 cut(s) 306
SwaI ATTTAAAT 1 cut(s) 525
TaaI ACNGT 1 cut(s) 754
TaiI ACGT 4 cut(s) 147, 255, 677, 767
TaqI TCGA 2 cut(s) 262, 390
TasI AATT 4 cut(s) 349, 397, 430, 526
TatI WGTACW 1 cut(s) 569
TfiI GAWTC 2 cut(s) 100, 123
Tru1I TTAA 2 cut(s) 156, 524
Tru9I TTAA 2 cut(s) 156, 524
TscAI CASTG 3 cut(s) 306, 367, 759
TseI GCWGC 3 cut(s) 50, 293, 799
TspDTI ATGAA 3 cut(s) 290, 522, 525
TspRI CASTG 3 cut(s) 306, 367, 759
Van91I CCANNNNNTGG 1 cut(s) 413
VneI GTGCAC 1 cut(s) 661
VpaK11BI GGWCC 2 cut(s) 357, 438
XapI RAATTY 1 cut(s) 526
XceI RCATGY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 3 cut(s) 316, 513, 644
XspI CTAG 3 cut(s) 315, 444, 807
ZraI GACGTC 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.