Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004899

Physical Location & Seq

Genomic Coordinates Reverse (-)

23073651 .. 23077253

Gene Structure 3603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00018980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGAGAATGAGATGGTTGAAGCTAAGCAGCCTTCTGGGTATGTTCAGTACAATCTTCTGGGTAATCTTTTTCAGGTCTCTGCCAAGTATGTCCCTCCTATCAGCCCAGTTGGCCGCGGCGCGTACGGGATTGTTTGCCGTGCAACAAACTCTGAGACAAAAGAAGAGGTTGCAATTAAGAAGATTGGGAATGCATTTGACAATAGGATCGATGCCAAGAGGACGCTCCGAGAGATAAAGCTCCTTAGCCATATGGATCATGACAATATTGTCAAAATTAAGGACATCATAAGGCCCCCAGATAAGGAGAATTTCAATGACGTTTACATTGTATATGAATTGATGGACACTGATCTAAATCAGATAATAAACTCCAGCCAGCCTTTGACAGATGATCACTGTCAGTACTTTCTGTATCAATTGCTGCGGGGATTGAAGTACATACACTCTGCACATGTTTTGCACCGTGATCTGAAACCAAGCAATCTGCTTCTCAATGCAAATTGTGACCTTAAGATTTGTGACTTTGGGCTTGCAAGAACTACATCTGAGACAGATTTCATGACAGAATATGTTGTCACTCGTTGGTATCGAGCCCCAGAATTACTACTCAACTGTTCCGAATACACTGCGGCTATTGATATTTGGTCAGTAGGATGTATTTTCATGGAGATTCTGATGAGGGAACCACTGTTCCCTGGTAAAGACTATGTACAGCAGTTGGGTCTCATAACTGAGCTACTAGGTTCACCAGAAGATTCAAATCTTGGCTTCCTAAGAAGTGAAAATGCTAAGAAATATGTTAAGCAGCTCCCACATGTCCCAAAGAAACCCTTTGCACACAGAAGTTCCCAAATGTCTCACCAGTGGCAATTGATCTCGCGGAAAAAATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01521 ko01522 ko01524 ko04010 ko04011 ko04012 ko04013 ko04014 ko04015 ko04022 ko04024 ko04062 ko04066 ko04068 ko04071 ko04072 ko04114 ko04140 ko04150 ko04151 ko04210 ko04214 ko04218 ko04261 ko04270 ko04320 ko04350 ko04360 ko04370 ko04371 ko04380 ko04510 ko04520 ko04540 ko04550 ko04611 ko04620 ko04621 ko04650 ko04657 ko04658 ko04659 ko04660 ko04662 ko04664 ko04666 ko04668 ko04713 ko04720 ko04722 ko04723 ko04724 ko04725 ko04726 ko04730 ko04810 ko04910 ko04912 ko04914 ko04915 ko04916 ko04917 ko04919 ko04921 ko04926 ko04930 ko04933 ko04934 ko04960 ko05010 ko05020 ko05034 ko05131 ko05132 ko05133 ko05140 ko05142 ko05145 ko05152 ko05160 ko05161 ko05164 ko05165 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05213 ko05214 ko05215 ko05216 ko05218 ko05219 ko05220 ko05221 ko05223 ko05224 ko05225 ko05226 ko05230 ko05231 map01521 map01522 map01524 map04010 map04011 map04012 map04013 map04014 map04015 map04022 map04024 map04062 map04066 map04068 map04071 map04072 map04114 map04140 map04150 map04151 map04210 map04214 map04218 map04261 map04270 map04320 map04350 map04360 map04370 map04371 map04380 map04510 map04520 map04540 map04550 map04611 map04620 map04621 map04650 map04657 map04658 map04659 map04660 map04662 map04664 map04666 map04668 map04713 map04720 map04722 map04723 map04724 map04725 map04726 map04730 map04810 map04910 map04912 map04914 map04915 map04916 map04917 map04919 map04921 map04926 map04930 map04933 map04934 map04960 map05010 map05020 map05034 map05131 map05132 map05133 map05140 map05142 map05145 map05152 map05160 map05161 map05164 map05165 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05213 map05214 map05215 map05216 map05218 map05219 map05220 map05221 map05223 map05224 map05225 map05226 map05230 map05231

Pfam Domains

Protein Families

Pkinase

Protein Analysis

298

Amino Acids

34.3

Weight (kDa)

7.1

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	36 - 240	5.7e-63	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	36 - 227	1.3e-33	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07880 AT1G07880
fragaria_vesca	FvH4_3g34090 FvH4_3g34090 FvH4_3g34090
malus_domestica	MD03G1107700.v1.1 MD11G1094600.v1.1 MD11G1120700.v1.1
prunus_persica	Prupe.6G090400_v2.0.a1 Prupe.6G090400_v2.0.a1
pyrus_communis	pycom03g08700 pycom03g08730
rosa_chinensis	RchiOBHm_Chr1g0321061 RchiOBHm_Chr5g0028801 RchiOBHm_Chr5g0061751
rosa_laevigata	RLG00000035502
rosa_multiflora	Rmu_sc0003709.1_g000007 Rmu_sc0008679.1_g000023
rosa_roxburghii	Rroxscaffold_1G00018980 Rroxscaffold_2G00120040
rosa_rugosa	Rorug05G0343100 Rorug05G0343200
rosa_samantha	Rh4BG358900 Rh4CG373300 Rh5AG404300 Rh5BG417300 Rh5CG441800 Rh5DG431500
rosa_wichuraiana	Rw1G005890 Rw5G037980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	269
AccII	CGCG	3 cut(s)	117, 122, 883
AciI	CCGC	5 cut(s)	115, 117, 427, 632, 883
AclWI	GGATC	2 cut(s)	215, 264
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	310
AfaI	GTAC	5 cut(s)	50, 125, 407, 440, 714
AfiI	CCNNNNNNNGG	1 cut(s)	304
AflII	CTTAAG	1 cut(s)	512
AflIII	ACRYGT	2 cut(s)	454, 817
AgsI	TTSAA	4 cut(s)	20, 316, 436, 762
AjnI	CCWGG	1 cut(s)	697
AloI	GAACNNNNNNTCC	4 cut(s)	677, 678, 709, 710
AluBI	AGCT	4 cut(s)	23, 241, 739, 811
AluI	AGCT	4 cut(s)	23, 241, 739, 811
Alw26I	GTCTC	5 cut(s)	82, 149, 545, 731, 864
AlwI	GGATC	2 cut(s)	215, 264
AoxI	GGCC	2 cut(s)	112, 293
ApeKI	GCWGC	3 cut(s)	28, 424, 808
ApoI	RAATTY	1 cut(s)	310
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	294
AsuHPI	GGTGA	2 cut(s)	741, 854
BanII	GRGCYC	1 cut(s)	598
BbvI	GCAGC	3 cut(s)	40, 411, 820
BccI	CCATC	2 cut(s)	7, 337
BceAI	ACGGC	1 cut(s)	123
BcgI	CGANNNNNNTGC	2 cut(s)	611, 645
BciT130I	CCWGG	1 cut(s)	699
BclI	TGATCA	1 cut(s)	394
BcoDI	GTCTC	5 cut(s)	82, 149, 545, 731, 864
BfaI	CTAG	2 cut(s)	743, 895
BfrI	CTTAAG	1 cut(s)	512
BglI	GCCNNNNNGGC	1 cut(s)	111
BisI	GCNGC	6 cut(s)	29, 115, 118, 425, 633, 809
BlpI	GCTNAGC	1 cut(s)	24
BlsI	GCNGC	6 cut(s)	30, 116, 119, 426, 634, 810
BmcAI	AGTACT	1 cut(s)	407
Bme1390I	CCNGG	1 cut(s)	699
BmgT120I	GGNCC	1 cut(s)	294
BmiI	GGNNCC	2 cut(s)	296, 687
BmrFI	CCNGG	1 cut(s)	699
BmrI	ACTGGG	1 cut(s)	101
BmsI	GCATC	1 cut(s)	202
BmuI	ACTGGG	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	358
Bpu10I	CCTNAGC	1 cut(s)	245
Bpu1102I	GCTNAGC	1 cut(s)	24
Bsa29I	ATCGAT	1 cut(s)	210
BsaBI	GATNNNNATC	2 cut(s)	357, 762
BsaI	GGTCTC	2 cut(s)	82, 731
BsaJI	CCNNGG	2 cut(s)	115, 697
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse1I	ACTGG	2 cut(s)	107, 865
Bse8I	GATNNNNATC	2 cut(s)	357, 762
BseBI	CCWGG	1 cut(s)	699
BseCI	ATCGAT	1 cut(s)	210
BseDI	CCNNGG	2 cut(s)	115, 697
BseGI	GGATG	1 cut(s)	662
BseJI	GATNNNNATC	2 cut(s)	357, 762
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMII	CTCAG	3 cut(s)	144, 540, 726
BseNI	ACTGG	2 cut(s)	107, 865
BseXI	GCAGC	3 cut(s)	40, 411, 820
BsgI	GTGCAG	1 cut(s)	435
Bsh1236I	CGCG	3 cut(s)	117, 122, 883
BshFI	GGCC	2 cut(s)	114, 295
BshVI	ATCGAT	1 cut(s)	210
BsiWI	CGTACG	1 cut(s)	123
BslFI	GGGAC	2 cut(s)	77, 806
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	5 cut(s)	82, 149, 545, 731, 864
BsmFI	GGGAC	2 cut(s)	77, 806
BsmI	GAATGC	1 cut(s)	196
BsnI	GGCC	2 cut(s)	114, 295
Bso31I	GGTCTC	2 cut(s)	82, 731
Bsp1286I	GDGCHC	1 cut(s)	598
Bsp1407I	TGTACA	1 cut(s)	712
Bsp143I	GATC	6 cut(s)	207, 256, 352, 394, 469, 876
Bsp1720I	GCTNAGC	1 cut(s)	24
BspACI	CCGC	5 cut(s)	115, 117, 427, 632, 883
BspANI	GGCC	2 cut(s)	114, 295
BspCNI	CTCAG	3 cut(s)	145, 541, 727
BspDI	ATCGAT	1 cut(s)	210
BspFNI	CGCG	3 cut(s)	117, 122, 883
BspHI	TCATGA	2 cut(s)	259, 561
BspLI	GGNNCC	2 cut(s)	296, 687
BspPI	GGATC	2 cut(s)	215, 264
BspTI	CTTAAG	1 cut(s)	512
BspTNI	GGTCTC	2 cut(s)	82, 731
BsrGI	TGTACA	1 cut(s)	712
BsrI	ACTGG	2 cut(s)	107, 865
BssECI	CCNNGG	2 cut(s)	115, 697
BssMI	GATC	6 cut(s)	207, 256, 352, 394, 469, 876
Bst2UI	CCWGG	1 cut(s)	699
Bst4CI	ACNGT	4 cut(s)	401, 467, 617, 693
Bst6I	CTCTTC	1 cut(s)	159
BstAFI	CTTAAG	1 cut(s)	512
BstAUI	TGTACA	1 cut(s)	712
BstC8I	GCNNGC	2 cut(s)	380, 534
BstDEI	CTNAG	7 cut(s)	24, 153, 245, 549, 735, 776, 792
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	662
BstFNI	CGCG	3 cut(s)	117, 122, 883
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	6 cut(s)	210, 259, 355, 397, 472, 879
BstMAI	GTCTC	5 cut(s)	82, 149, 545, 731, 864
BstMBI	GATC	6 cut(s)	207, 256, 352, 394, 469, 876
BstMWI	GCNNNNNNNGC	1 cut(s)	111
BstNI	CCWGG	1 cut(s)	699
BstNSI	RCATGY	2 cut(s)	458, 821
BstSCI	CCNGG	1 cut(s)	697
BstUI	CGCG	3 cut(s)	117, 122, 883
BstV1I	GCAGC	3 cut(s)	40, 411, 820
Bsu15I	ATCGAT	1 cut(s)	210
BsuRI	GGCC	2 cut(s)	114, 295
BsuTUI	ATCGAT	1 cut(s)	210
BtgI	CCRYGG	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	662
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	5 cut(s)	348, 397, 627, 689, 872
Cac8I	GCNNGC	2 cut(s)	380, 534
CciI	TCATGA	2 cut(s)	259, 561
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	294
Cfr42I	CCGCGG	1 cut(s)	118
ClaI	ATCGAT	1 cut(s)	210
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	5 cut(s)	49, 124, 406, 439, 713
CviAII	CATG	5 cut(s)	260, 455, 562, 667, 818
CviQI	GTAC	5 cut(s)	49, 124, 406, 439, 713
DdeI	CTNAG	7 cut(s)	24, 153, 245, 549, 735, 776, 792
DpnI	GATC	6 cut(s)	209, 258, 354, 396, 471, 878
DpnII	GATC	6 cut(s)	207, 256, 352, 394, 469, 876
DrdI	GACNNNNNNGTC	1 cut(s)	269
DseDI	GACNNNNNNGTC	1 cut(s)	269
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco24I	GRGCYC	1 cut(s)	598
Eco31I	GGTCTC	2 cut(s)	82, 731
EcoO109I	RGGNCCY	1 cut(s)	294
EcoRII	CCWGG	1 cut(s)	697
EcoT22I	ATGCAT	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	598
FaeI	CATG	5 cut(s)	263, 458, 565, 670, 821
FalI	AAGNNNNNCTT	2 cut(s)	818, 850
FaqI	GGGAC	2 cut(s)	77, 806
FatI	CATG	5 cut(s)	259, 454, 561, 666, 817
FauI	CCCGC	1 cut(s)	420
FauNDI	CATATG	1 cut(s)	252
FbaI	TGATCA	1 cut(s)	394
Fnu4HI	GCNGC	6 cut(s)	29, 115, 118, 425, 633, 809
FokI	GGATG	1 cut(s)	669
FriOI	GRGCYC	1 cut(s)	598
Fsp4HI	GCNGC	6 cut(s)	29, 115, 118, 425, 633, 809
FspBI	CTAG	2 cut(s)	743, 895
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	6 cut(s)	29, 115, 118, 425, 633, 809
GsuI	CTGGAG	1 cut(s)	358
HaeIII	GGCC	2 cut(s)	114, 295
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	5 cut(s)	263, 458, 565, 670, 821
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HinfI	GANTC	2 cut(s)	673, 758
HphI	GGTGA	2 cut(s)	741, 854
Hpy166II	GTNNAC	2 cut(s)	325, 749
Hpy188I	TCNGA	7 cut(s)	154, 230, 363, 474, 550, 622, 678
Hpy188III	TCNNGA	2 cut(s)	260, 562
Hpy8I	GTNNAC	2 cut(s)	325, 749
HpyAV	CCTTC	1 cut(s)	42
HpyCH4III	ACNGT	4 cut(s)	401, 467, 617, 693
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	8 cut(s)	143, 173, 194, 452, 463, 500, 536, 839
HpyF10VI	GCNNNNNNNGC	1 cut(s)	111
HpyF3I	CTNAG	7 cut(s)	24, 153, 245, 549, 735, 776, 792
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	5 cut(s)	263, 458, 565, 670, 821
HspAI	GCGC	1 cut(s)	120
Ksp22I	TGATCA	1 cut(s)	394
KspI	CCGCGG	1 cut(s)	118
Kzo9I	GATC	6 cut(s)	207, 256, 352, 394, 469, 876
LmnI	GCTCC	3 cut(s)	231, 246, 816
Lsp1109I	GCAGC	3 cut(s)	40, 411, 820
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	2 cut(s)	743, 895
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	3 cut(s)	506, 521, 577
MalI	GATC	6 cut(s)	209, 258, 354, 396, 471, 878
MboI	GATC	6 cut(s)	207, 256, 352, 394, 469, 876
MboII	GAAGA	4 cut(s)	47, 176, 193, 767
MfeI	CAATTG	2 cut(s)	419, 872
MhlI	GDGCHC	1 cut(s)	598
MluCI	AATT	8 cut(s)	174, 276, 310, 338, 419, 502, 602, 872
MnlI	CCTC	4 cut(s)	105, 160, 213, 675
Mph1103I	ATGCAT	1 cut(s)	196
MseI	TTAA	4 cut(s)	177, 279, 513, 804
MspA1I	CMGCKG	1 cut(s)	117
MspCI	CTTAAG	1 cut(s)	512
MspR9I	CCNGG	1 cut(s)	699
MunI	CAATTG	2 cut(s)	419, 872
Mva1269I	GAATGC	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	699
MvnI	CGCG	3 cut(s)	117, 122, 883
MwoI	GCNNNNNNNGC	1 cut(s)	111
NdeI	CATATG	1 cut(s)	252
NdeII	GATC	6 cut(s)	207, 256, 352, 394, 469, 876
NlaIII	CATG	5 cut(s)	263, 458, 565, 670, 821
NlaIV	GGNNCC	2 cut(s)	296, 687
NmuCI	GTSAC	3 cut(s)	506, 521, 577
NsiI	ATGCAT	1 cut(s)	196
NspI	RCATGY	2 cut(s)	458, 821
PagI	TCATGA	2 cut(s)	259, 561
PciI	ACATGT	2 cut(s)	454, 817
PcsI	WCGNNNNNNNCGW	1 cut(s)	589
PctI	GAATGC	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	673, 758
Pfl23II	CGTACG	1 cut(s)	123
PkrI	GCNGC	6 cut(s)	30, 116, 119, 426, 634, 810
PscI	ACATGT	2 cut(s)	454, 817
Psp6I	CCWGG	1 cut(s)	697
PspGI	CCWGG	1 cut(s)	697
PspLI	CGTACG	1 cut(s)	123
PspN4I	GGNNCC	2 cut(s)	296, 687
PspPI	GGNCC	1 cut(s)	294
RsaI	GTAC	5 cut(s)	50, 125, 407, 440, 714
RsaNI	GTAC	5 cut(s)	49, 124, 406, 439, 713
SacII	CCGCGG	1 cut(s)	118
SaqAI	TTAA	4 cut(s)	177, 279, 513, 804
SatI	GCNGC	6 cut(s)	29, 115, 118, 425, 633, 809
Sau3AI	GATC	6 cut(s)	207, 256, 352, 394, 469, 876
Sau96I	GGNCC	1 cut(s)	294
ScaI	AGTACT	1 cut(s)	407
ScrFI	CCNGG	1 cut(s)	699
SduI	GDGCHC	1 cut(s)	598
SetI	ASST	9 cut(s)	25, 78, 171, 243, 324, 513, 741, 748, 813
SfaNI	GCATC	1 cut(s)	202
Sfr303I	CCGCGG	1 cut(s)	118
SgrBI	CCGCGG	1 cut(s)	118
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	8 cut(s)	174, 276, 310, 338, 419, 502, 602, 872
SsiI	CCGC	5 cut(s)	115, 117, 427, 632, 883
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	2 cut(s)	743, 895
StyD4I	CCNGG	1 cut(s)	697
TaaI	ACNGT	4 cut(s)	401, 467, 617, 693
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	2 cut(s)	210, 592
TasI	AATT	8 cut(s)	174, 276, 310, 338, 419, 502, 602, 872
TatI	WGTACW	4 cut(s)	48, 405, 438, 712
TauI	GCSGC	3 cut(s)	117, 120, 635
TfiI	GAWTC	2 cut(s)	673, 758
Tru1I	TTAA	4 cut(s)	177, 279, 513, 804
Tru9I	TTAA	4 cut(s)	177, 279, 513, 804
TscAI	CASTG	5 cut(s)	355, 404, 634, 696, 872
TseFI	GTSAC	3 cut(s)	506, 521, 577
TseI	GCWGC	3 cut(s)	28, 424, 808
Tsp45I	GTSAC	3 cut(s)	506, 521, 577
TspDTI	ATGAA	3 cut(s)	351, 550, 655
TspRI	CASTG	5 cut(s)	355, 404, 634, 696, 872
Vha464I	CTTAAG	1 cut(s)	512
XapI	RAATTY	1 cut(s)	310
XceI	RCATGY	2 cut(s)	458, 821
XspI	CTAG	2 cut(s)	743, 895
ZrmI	AGTACT	1 cut(s)	407
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.