Rorug05G0343100

mitogen-activated protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004899
Physical Location & Seq
Reverse (-)
42091833 .. 42098954
7122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0343100.1

Sequence Viewer

Length: 2742 bp
ATGCTTTTTATAGTAGCTTATGTTAATAGTAGGTTGCTGGGGTGGGAAGGAGAAGAGGAGAGATTCAAGATTGTGGTGGACTTTGGGGGAGGGTTTAGGTTTGTTTCCGGAGAGGGATTTCAACAAACAGGAACAGTAGTTAACCGTACTGCTTTGGTTTCTAATTTTTGGAGCCAGTTCATTCAGGTGTTGAAACACGGGAACAATATACATTGCTCAACTTTGCAGCTTGCTTCTACCATTGGGGTAGGAAAAAGAAGAGGAAAGATTGCTGCTAGAATTTTGATCGAGTTTGCGAGGAAGCTTTCAATAGAAGAAGAGATTTTGATTGCAGATCATCGGGGTGGGAAGAAGAAGAAGAGAGGTCCAAGATTTTGGTCGACTTTCGGAGCAAGGTTTGGGTTTGTTTCGGAAGAGGTTGCTGCTAGAATTTTGATTGAGTTTGGGAGGAAGCTTTCAATAGGCCTTGTATTGCCTCCGCCCGTAGCATCAACTCTTTTCTGCAATCAGCTAAACAGTCCCACTATCAAAAAATCATCTCCAACAGCAATGGGGAACCCAGATACATGGCGTTGCCAGAATTGCGGCAATGTGGGGCTGGAAGATGGCGATGATGGCTTCTTCTATTGCACCCAGTGCAACTCACAAGCCGAGGACTTCATGGACACCGGCGTGGCGGATGAGGACTTCCTCGACCAGACTGGCAACCCATTTGGAGGCCTCTACTCTGCTCGTCACACCCGTCGCATTAACAGCTCTGTTGTCAAACCAGAGCCCCTCTCTGAACCCTTAGACGACTTGTCACCTCATTATCAGCTGTTTAGTCAAAGCCAAGCCAAAACAAAAGATCAGGATCCCATAGGGCTCGAGGATTTTTCATTTGATGGGACAAAGAATGAGGACTATTACGGATGGATTAGGCTTAGGTATGTGATGGGATTGCAACGGATGATTGAGCTCCAATGTGAGTCTTTGGTCACAGAGTTAAAGGTAAATCCCTTGATATGTGGTTTGGCTGGGACCATTTGGCTCCGCTTCTTGGCTGGGACTCAGGTTTTCAATGATGATTGTGCTGACCAGATCTTTGACTTCAATGAGTCTGAGATCCGCCAACAAGGAGAACCACCTGAAAAATTGAAGATGCCTTCTAGAAGCCATGCACAACATCATGCAAAGTATGACCCTCAAGCAGTGAAGGCGTGGTTTAGGTCCTTGAAGAAGATTATACCACTATCTTATACTCTAGCTGTTTCTTTTCTGGCTTGTCATCTTGCCAGGGAAGCAGTACTGCCAACCGACATGGTAAAATGGTCCCTAGATGGAAAGCTCCCATATTTTGCTGCTTTTCTTGAAATTGAAAATGATCTGAAACAGTTTGGACAGCCTTCACGTGCCTGCCCAATAAGTTCAAGCTTGATGTTTAGGCCTTCTGAATCAGTTCCAGTGCAGAAGCTAGAATCACTAGCAGCATCTGTTGCTGGGTCCATAGGCTTGGACTTACCTCCGGTCAATTTCTATACTATCACTTCCCGCTTTCTAGATAAGTTATCTCTTCCAGTCGAAAAGATTCTTCCTCATGCGTGCCGCATATATGAGTGGTCAATGCCTCCAGAGTTATGGTTATCTACAAATGAGTTGAGGCTTCCAACTCGTGTTTGTGTGATGTCAATACTGATTGTAGCTGTGAGAATTCTTTATAATATTCATGGTTTTGGAGAATGGGAAAGAAGTTTGTCCAGTCGTCATGCTTCATCTTCCACTTCTAACAATTGTGGAGATGAGGACCCCAGATCCAGTTGCGAAATGAAGGATGATGCTGATAAGGATTCAGATGCTCTGCCTCACAGTAAAGATGATTCAGATACAAACTTGGTTAGAAACTTATCGCGTGCACATAACTCTAAGTTGGATACTGCAGAACTTTTGGCCAACCTTGAAGCAAGATATAATGAAATTGCTGATGACTATGAATATTGCAAGGACTTGCCAACATATCTCCAGTTCTGCAAGGATACAGTCTTTGCTAGATCAGAACCATCGCGTAAGGATGCCAAGGAAGAAAAGTTAATTGAATCTTTATGGAACTTCTATCAAAGTGGAAAGGATTCTGATACAGCAGTGGAACAAGGATTGCATTGTGGTAGAACTGATGACCAGAAAAGACCGAGGTATAATGAAGAATGCACTAGTAGTAGTCCATCTAGAGAAAAGAAGCTTAGGACGCCATCCTCCAATGACGAAACTTCTCTTGCAGATGACCGTAAGAGGGGCCAAAATGGTGCTCATTTTGGTGATAGCTCACAGAATAGTCAGAACTCAGAAGTGAATGACCAAGAGTTAGCTGAGACTTTCAAAGATGAAGCCATTAATAGAATGAAATTAGACATGGAGGAGAAGAGGTTCTGTTATATTCCACCGAGGGTGAACCTCAAAAGATTTGATTACCTTCACTATGTGAGGAAGCAGGATGAAGGTGCCTACACTTACGTTGCACATGCTGACTACTACATACTGCTTCGTGCTTGCTCTAGAGTTGCCCAAGTCGAAACTCGGTGTATGCACATTGGGGTGTTGAGCTTTGAGAGGAGACTGGCTTGGTTGGAGAAGAGAATCGACCACTGCTTGCACTTGACCCCTCCTATAGTATCATGTGATTATTGTACTGACATGGTTCTTGAGAACACTACTGATACAGAAACTATTGCTGAGGAATCGATTGGACTTTCAAATTTGAATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko01522 ko01524 ko04010 ko04011 ko04012 ko04013 ko04014 ko04015 ko04022 ko04024 ko04062 ko04066 ko04068 ko04071 ko04072 ko04114 ko04140 ko04150 ko04151 ko04210 ko04214 ko04218 ko04261 ko04270 ko04320 ko04350 ko04360 ko04370 ko04371 ko04380 ko04510 ko04520 ko04540 ko04550 ko04611 ko04620 ko04621 ko04650 ko04657 ko04658 ko04659 ko04660 ko04662 ko04664 ko04666 ko04668 ko04713 ko04720 ko04722 ko04723 ko04724 ko04725 ko04726 ko04730 ko04810 ko04910 ko04912 ko04914 ko04915 ko04916 ko04917 ko04919 ko04921 ko04926 ko04930 ko04933 ko04934 ko04960 ko05010 ko05020 ko05034 ko05131 ko05132 ko05133 ko05140 ko05142 ko05145 ko05152 ko05160 ko05161 ko05164 ko05165 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05213 ko05214 ko05215 ko05216 ko05218 ko05219 ko05220 ko05221 ko05223 ko05224 ko05225 ko05226 ko05230 ko05231 map01521 map01522 map01524 map04010 map04011 map04012 map04013 map04014 map04015 map04022 map04024 map04062 map04066 map04068 map04071 map04072 map04114 map04140 map04150 map04151 map04210 map04214 map04218 map04261 map04270 map04320 map04350 map04360 map04370 map04371 map04380 map04510 map04520 map04540 map04550 map04611 map04620 map04621 map04650 map04657 map04658 map04659 map04660 map04662 map04664 map04666 map04668 map04713 map04720 map04722 map04723 map04724 map04725 map04726 map04730 map04810 map04910 map04912 map04914 map04915 map04916 map04917 map04919 map04921 map04926 map04930 map04933 map04934 map04960 map05010 map05020 map05034 map05131 map05132 map05133 map05140 map05142 map05145 map05152 map05160 map05161 map05164 map05165 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05213 map05214 map05215 map05216 map05218 map05219 map05220 map05221 map05223 map05224 map05225 map05226 map05230 map05231
Pfam Domains
Protein Families
Pkinase

Protein Analysis

913

Amino Acids

103.38

Weight (kDa)

5.64

Isoelectric Point (pI)

54.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rrn7_cyclin_N PF20644 314 - 449 2.9e-08 Rrn7/TAF1B, N-terminal cyclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1698
AccB1I GGYRCC 1 cut(s) 2474
AccI GTMKAC 1 cut(s) 380
AccII CGCG 2 cut(s) 1888, 2041
AccIII TCCGGA 1 cut(s) 107
AciI CCGC 7 cut(s) 479, 585, 677, 1033, 1108, 1531, 1585
AclWI GGATC 4 cut(s) 848, 861, 1099, 1785
AcoI YGGCCR 1 cut(s) 1926
AcsI RAATTY 4 cut(s) 279, 429, 1689, 2728
AcvI CACGTG 1 cut(s) 1391
AcyI GRCGYC 1 cut(s) 2222
AdeI CACNNNGTG 2 cut(s) 636, 2455
AfaI GTAC 3 cut(s) 148, 1287, 2662
AfiI CCNNNNNNNGG 3 cut(s) 716, 1039, 2266
AhdI GACNNNNNGTC 1 cut(s) 799
AhlI ACTAGT 1 cut(s) 2186
AjnI CCWGG 1 cut(s) 1274
AleI CACNNNNGTG 1 cut(s) 671
AloI GAACNNNNNNTCC 2 cut(s) 2384, 2416
Alw21I GWGCWC 3 cut(s) 960, 1894, 2284
Alw26I GTCTC 2 cut(s) 2339, 2581
Alw44I GTGCAC 1 cut(s) 1890
AlwI GGATC 4 cut(s) 848, 861, 1099, 1785
AlwNI CAGNNNCTG 1 cut(s) 1472
Ama87I CYCGRG 1 cut(s) 866
Aor13HI TCCGGA 1 cut(s) 107
AoxI GGCC 5 cut(s) 463, 718, 1424, 1926, 2269
ApaLI GTGCAC 1 cut(s) 1890
ApeKI GCWGC 5 cut(s) 226, 272, 422, 1340, 1466
ApoI RAATTY 4 cut(s) 279, 429, 1689, 2728
ArsI GACNNNNNNTTYG 2 cut(s) 1067, 1099
AseI ATTAAT 1 cut(s) 2367
Asp700I GAANNNNTTC 4 cut(s) 1437, 1566, 2104, 2399
AspS9I GGNCC 7 cut(s) 365, 1020, 1209, 1311, 1482, 1783, 2269
AsuHPI GGTGA 3 cut(s) 795, 2303, 2434
AvaI CYCGRG 1 cut(s) 866
AvaII GGWCC 6 cut(s) 365, 1020, 1209, 1311, 1482, 1783
BaeGI GKGCMC 1 cut(s) 1894
BaeI ACNNNNGTAYC 2 cut(s) 2103, 2136
BalI TGGCCA 1 cut(s) 1928
BamHI GGATCC 1 cut(s) 853
BanI GGYRCC 1 cut(s) 2474
BanII GRGCYC 3 cut(s) 777, 867, 960
BauI CACGAG 1 cut(s) 1650
BbrPI CACGTG 1 cut(s) 1391
Bbv12I GWGCWC 3 cut(s) 960, 1894, 2284
BbvCI CCTCAGC 1 cut(s) 2706
BbvI GCAGC 5 cut(s) 238, 259, 409, 1327, 1478
BccI CCATC 9 cut(s) 599, 608, 878, 906, 928, 1313, 2044, 2206, 2233
BciT130I CCWGG 1 cut(s) 1276
BciVI GTATCC 2 cut(s) 1903, 2005
BcoDI GTCTC 2 cut(s) 2339, 2581
BcuI ACTAGT 1 cut(s) 2186
BfmI CTRYAG 2 cut(s) 1914, 2640
BfuI GTATCC 2 cut(s) 1903, 2005
BglII AGATCT 1 cut(s) 1080
BisI GCNGC 7 cut(s) 227, 273, 423, 586, 1341, 1467, 1585
BlsI GCNGC 7 cut(s) 228, 274, 424, 587, 1342, 1468, 1586
BmcAI AGTACT 1 cut(s) 1287
Bme1390I CCNGG 1 cut(s) 1276
Bme18I GGWCC 6 cut(s) 365, 1020, 1209, 1311, 1482, 1783
BmeRI GACNNNNNGTC 1 cut(s) 799
BmeT110I CYCGRG 1 cut(s) 866
BmgT120I GGNCC 7 cut(s) 365, 1020, 1209, 1311, 1482, 1783, 2269
BmrFI CCNGG 1 cut(s) 1276
BmrI ACTGGG 1 cut(s) 628
BmsI GCATC 6 cut(s) 497, 1131, 1478, 1804, 1822, 2038
BmuI ACTGGG 1 cut(s) 628
BplI GAGNNNNNCTC 2 cut(s) 764, 796
BpmI CTGGAG 2 cut(s) 1593, 1982
Bpu10I CCTNAGC 3 cut(s) 923, 2216, 2706
BpuEI CTTGAG 2 cut(s) 1170, 2696
Bsa29I ATCGAT 1 cut(s) 2714
BsaAI YACGTR 1 cut(s) 1391
BsaBI GATNNNNATC 1 cut(s) 852
BsaHI GRCGYC 1 cut(s) 2222
BsaJI CCNNGG 5 cut(s) 651, 1275, 2052, 2165, 2417
BsaWI WCCGGW 2 cut(s) 107, 1504
BsaXI ACNNNNNCTCC 2 cut(s) 2384, 2414
Bsc4I CCNNNNNNNGG 3 cut(s) 716, 1039, 2266
Bse118I RCCGGY 1 cut(s) 668
Bse1I ACTGG 9 cut(s) 175, 634, 706, 1442, 1556, 1737, 1794, 1999, 2595
Bse3DI GCAATG 3 cut(s) 211, 555, 595
Bse8I GATNNNNATC 1 cut(s) 852
BseAI TCCGGA 1 cut(s) 107
BseBI CCWGG 1 cut(s) 1276
BseCI ATCGAT 1 cut(s) 2714
BseDI CCNNGG 5 cut(s) 651, 1275, 2052, 2165, 2417
BseGI GGATG 7 cut(s) 685, 917, 954, 1816, 2053, 2225, 2473
BseJI GATNNNNATC 1 cut(s) 852
BseLI CCNNNNNNNGG 3 cut(s) 716, 1039, 2266
BseMI GCAATG 3 cut(s) 211, 555, 595
BseMII CTCAG 5 cut(s) 1064, 1092, 2331, 2334, 2697
BseNI ACTGG 9 cut(s) 175, 634, 706, 1442, 1556, 1737, 1794, 1999, 2595
BseRI GAGGAG 3 cut(s) 71, 2405, 2599
BseSI GKGCMC 1 cut(s) 1894
BseXI GCAGC 5 cut(s) 238, 259, 409, 1327, 1478
BseYI CCCAGC 4 cut(s) 37, 1016, 1043, 1478
BsgI GTGCAG 1 cut(s) 1466
Bsh1236I CGCG 2 cut(s) 1888, 2041
BshFI GGCC 5 cut(s) 465, 720, 1426, 1928, 2271
BshNI GGYRCC 1 cut(s) 2474
BshVI ATCGAT 1 cut(s) 2714
BsiHKAI GWGCWC 3 cut(s) 960, 1894, 2284
BsiHKCI CYCGRG 1 cut(s) 866
BsiSI CCGG 3 cut(s) 108, 669, 1505
BslFI GGGAC 5 cut(s) 504, 901, 1033, 1060, 1297
BslI CCNNNNNNNGG 3 cut(s) 716, 1039, 2266
BsmAI GTCTC 2 cut(s) 2339, 2581
BsmFI GGGAC 5 cut(s) 504, 901, 1033, 1060, 1297
BsmI GAATGC 1 cut(s) 2186
BsnI GGCC 5 cut(s) 465, 720, 1426, 1928, 2271
BsoBI CYCGRG 1 cut(s) 866
Bsp1286I GDGCHC 5 cut(s) 777, 867, 960, 1894, 2284
Bsp13I TCCGGA 1 cut(s) 107
Bsp143I GATC 9 cut(s) 285, 334, 847, 853, 1080, 1104, 1363, 1790, 2027
BspACI CCGC 7 cut(s) 479, 585, 677, 1033, 1108, 1531, 1585
BspANI GGCC 5 cut(s) 465, 720, 1426, 1928, 2271
BspCNI CTCAG 5 cut(s) 1063, 1093, 2330, 2335, 2698
BspDI ATCGAT 1 cut(s) 2714
BspEI TCCGGA 1 cut(s) 107
BspFNI CGCG 2 cut(s) 1888, 2041
BspMAI CTGCAG 1 cut(s) 1918
BspPI GGATC 4 cut(s) 848, 861, 1099, 1785
BspT107I GGYRCC 1 cut(s) 2474
BsrDI GCAATG 3 cut(s) 211, 555, 595
BsrFI RCCGGY 1 cut(s) 668
BsrI ACTGG 9 cut(s) 175, 634, 706, 1442, 1556, 1737, 1794, 1999, 2595
BssAI RCCGGY 1 cut(s) 668
BssECI CCNNGG 5 cut(s) 651, 1275, 2052, 2165, 2417
BssMI GATC 9 cut(s) 285, 334, 847, 853, 1080, 1104, 1363, 1790, 2027
BssNI GRCGYC 1 cut(s) 2222
BssSI CACGAG 1 cut(s) 1650
BssT1I CCWWGG 1 cut(s) 2052
Bst2BI CACGAG 1 cut(s) 1650
Bst2UI CCWGG 1 cut(s) 1276
Bst4CI ACNGT 7 cut(s) 136, 146, 518, 1374, 1847, 2017, 2261
Bst6I CTCTTC 8 cut(s) 48, 253, 312, 353, 408, 1557, 2390, 2600
BstACI GRCGYC 1 cut(s) 2222
BstAPI GCANNNNNTGC 2 cut(s) 636, 1475
BstBAI YACGTR 1 cut(s) 1391
BstC8I GCNNGC 6 cut(s) 231, 1396, 1582, 1890, 2524, 2624
BstDEI CTNAG 9 cut(s) 790, 923, 1050, 1101, 1902, 2216, 2317, 2343, 2706
BstF5I GGATG 7 cut(s) 685, 917, 954, 1816, 2053, 2225, 2473
BstFNI CGCG 2 cut(s) 1888, 2041
BstKTI GATC 9 cut(s) 288, 337, 850, 856, 1083, 1107, 1366, 1793, 2030
BstMAI GTCTC 2 cut(s) 2339, 2581
BstMBI GATC 9 cut(s) 285, 334, 847, 853, 1080, 1104, 1363, 1790, 2027
BstMWI GCNNNNNNNGC 8 cut(s) 582, 615, 636, 753, 1196, 1280, 1475, 2221
BstNI CCWGG 1 cut(s) 1276
BstNSI RCATGY 1 cut(s) 2498
BstSCI CCNGG 1 cut(s) 1274
BstSFI CTRYAG 2 cut(s) 1914, 2640
BstSLI GKGCMC 1 cut(s) 1894
BstUI CGCG 2 cut(s) 1888, 2041
BstV1I GCAGC 5 cut(s) 238, 259, 409, 1327, 1478
BstX2I RGATCY 4 cut(s) 853, 1080, 1104, 1790
BstXI CCANNNNNNTGG 4 cut(s) 375, 567, 1492, 1617
BstYI RGATCY 4 cut(s) 853, 1080, 1104, 1790
Bsu15I ATCGAT 1 cut(s) 2714
BsuI GTATCC 2 cut(s) 1903, 2005
BsuRI GGCC 5 cut(s) 465, 720, 1426, 1928, 2271
BsuTUI ATCGAT 1 cut(s) 2714
BtgZI GCGATG 2 cut(s) 624, 2022
BtsCI GGATG 7 cut(s) 685, 917, 954, 1816, 2053, 2225, 2473
BtsI GCAGTG 3 cut(s) 1197, 2124, 2617
BtsIMutI CAGTG 5 cut(s) 641, 1197, 1449, 2124, 2617
Cac8I GCNNGC 6 cut(s) 231, 1396, 1582, 1890, 2524, 2624
CaiI CAGNNNCTG 1 cut(s) 1472
Cfr10I RCCGGY 1 cut(s) 668
Cfr13I GGNCC 7 cut(s) 365, 1020, 1209, 1311, 1482, 1783, 2269
ClaI ATCGAT 1 cut(s) 2714
CseI GACGC 1 cut(s) 2230
Csp6I GTAC 3 cut(s) 147, 1286, 2661
CviQI GTAC 3 cut(s) 147, 1286, 2661
DdeI CTNAG 9 cut(s) 790, 923, 1050, 1101, 1902, 2216, 2317, 2343, 2706
DpnI GATC 9 cut(s) 287, 336, 849, 855, 1082, 1106, 1365, 1792, 2029
DpnII GATC 9 cut(s) 285, 334, 847, 853, 1080, 1104, 1363, 1790, 2027
DraIII CACNNNGTG 2 cut(s) 636, 2455
DriI GACNNNNNGTC 1 cut(s) 799
EaeI YGGCCR 1 cut(s) 1926
Eam1104I CTCTTC 8 cut(s) 48, 253, 312, 353, 408, 1557, 2390, 2600
Eam1105I GACNNNNNGTC 1 cut(s) 799
EarI CTCTTC 8 cut(s) 48, 253, 312, 353, 408, 1557, 2390, 2600
EciI GGCGGA 3 cut(s) 468, 692, 1097
Ecl136II GAGCTC 1 cut(s) 958
Eco130I CCWWGG 1 cut(s) 2052
Eco147I AGGCCT 3 cut(s) 465, 720, 1426
Eco24I GRGCYC 3 cut(s) 777, 867, 960
Eco47I GGWCC 6 cut(s) 365, 1020, 1209, 1311, 1482, 1783
Eco53kI GAGCTC 1 cut(s) 958
Eco72I CACGTG 1 cut(s) 1391
Eco88I CYCGRG 1 cut(s) 866
EcoICRI GAGCTC 1 cut(s) 958
EcoO109I RGGNCCY 2 cut(s) 1209, 1783
EcoRI GAATTC 1 cut(s) 1689
EcoRII CCWGG 1 cut(s) 1274
EcoT14I CCWWGG 1 cut(s) 2052
EcoT38I GRGCYC 3 cut(s) 777, 867, 960
ErhI CCWWGG 1 cut(s) 2052
FaqI GGGAC 5 cut(s) 504, 901, 1033, 1060, 1297
FauI CCCGC 1 cut(s) 1538
FblI GTMKAC 1 cut(s) 380
Fnu4HI GCNGC 7 cut(s) 227, 273, 423, 586, 1341, 1467, 1585
FokI GGATG 7 cut(s) 692, 924, 961, 1823, 2060, 2212, 2480
FriOI GRGCYC 3 cut(s) 777, 867, 960
Fsp4HI GCNGC 7 cut(s) 227, 273, 423, 586, 1341, 1467, 1585
GluI GCNGC 7 cut(s) 227, 273, 423, 586, 1341, 1467, 1585
GsaI CCCAGC 4 cut(s) 41, 1020, 1047, 1482
GsuI CTGGAG 2 cut(s) 1593, 1982
HaeIII GGCC 5 cut(s) 465, 720, 1426, 1928, 2271
HapII CCGG 3 cut(s) 108, 669, 1505
HgaI GACGC 1 cut(s) 2230
Hin1I GRCGYC 1 cut(s) 2222
HincII GTYRAC 2 cut(s) 142, 381
HindII GTYRAC 2 cut(s) 142, 381
HindIII AAGCTT 4 cut(s) 302, 452, 1411, 2213
HpaI GTTAAC 1 cut(s) 142
HpaII CCGG 3 cut(s) 108, 669, 1505
HphI GGTGA 3 cut(s) 795, 2303, 2434
Hpy166II GTNNAC 5 cut(s) 79, 142, 381, 1892, 2425
Hpy8I GTNNAC 5 cut(s) 79, 142, 381, 1892, 2425
Hpy99I CGWCG 1 cut(s) 747
HpyAV CCTTC 8 cut(s) 41, 1155, 1189, 1395, 1437, 1801, 2456, 2465
HpyCH4III ACNGT 7 cut(s) 136, 146, 518, 1374, 1847, 2017, 2261
HpyCH4IV ACGT 2 cut(s) 1390, 2487
HpyF10VI GCNNNNNNNGC 8 cut(s) 582, 615, 636, 753, 1196, 1280, 1475, 2221
HpyF3I CTNAG 9 cut(s) 790, 923, 1050, 1101, 1902, 2216, 2317, 2343, 2706
HpySE526I ACGT 2 cut(s) 1390, 2487
Hsp92I GRCGYC 1 cut(s) 2222
Kpn2I TCCGGA 1 cut(s) 107
KspAI GTTAAC 1 cut(s) 142
Kzo9I GATC 9 cut(s) 285, 334, 847, 853, 1080, 1104, 1363, 1790, 2027
LmnI GCTCC 5 cut(s) 171, 389, 963, 1035, 1332
Lsp1109I GCAGC 5 cut(s) 238, 259, 409, 1327, 1478
LweI GCATC 6 cut(s) 497, 1131, 1478, 1804, 1822, 2038
MaeII ACGT 2 cut(s) 1390, 2487
MaeIII GTNAC 3 cut(s) 734, 801, 976
MalI GATC 9 cut(s) 287, 336, 849, 855, 1082, 1106, 1365, 1792, 2029
MboI GATC 9 cut(s) 285, 334, 847, 853, 1080, 1104, 1363, 1790, 2027
MfeI CAATTG 1 cut(s) 1768
MflI RGATCY 4 cut(s) 853, 1080, 1104, 1790
MhlI GDGCHC 5 cut(s) 777, 867, 960, 1894, 2284
MlsI TGGCCA 1 cut(s) 1928
MluNI TGGCCA 1 cut(s) 1928
MlyI GAGTC 3 cut(s) 977, 1042, 1106
MmeI TCCRAC 4 cut(s) 566, 1670, 1887, 2580
Mox20I TGGCCA 1 cut(s) 1928
MroI TCCGGA 1 cut(s) 107
MroXI GAANNNNTTC 4 cut(s) 1437, 1566, 2104, 2399
MscI TGGCCA 1 cut(s) 1928
MseI TTAA 6 cut(s) 24, 141, 750, 986, 2066, 2367
MslI CAYNNNNRTG 5 cut(s) 185, 342, 671, 2289, 2567
Msp20I TGGCCA 1 cut(s) 1928
MspA1I CMGCKG 1 cut(s) 817
MspI CCGG 3 cut(s) 108, 669, 1505
MspR9I CCNGG 1 cut(s) 1276
MunI CAATTG 1 cut(s) 1768
Mva1269I GAATGC 1 cut(s) 2186
MvaI CCWGG 1 cut(s) 1276
MvnI CGCG 2 cut(s) 1888, 2041
MwoI GCNNNNNNNGC 8 cut(s) 582, 615, 636, 753, 1196, 1280, 1475, 2221
NdeII GATC 9 cut(s) 285, 334, 847, 853, 1080, 1104, 1363, 1790, 2027
NmeAIII GCCGAG 1 cut(s) 676
NmuCI GTSAC 3 cut(s) 734, 801, 976
NspI RCATGY 1 cut(s) 2498
OliI CACNNNNGTG 1 cut(s) 671
PaeR7I CTCGAG 1 cut(s) 866
PceI AGGCCT 3 cut(s) 465, 720, 1426
PcsI WCGNNNNNNNCGW 1 cut(s) 739
PctI GAATGC 1 cut(s) 2186
PdmI GAANNNNTTC 4 cut(s) 1437, 1566, 2104, 2399
PkrI GCNGC 7 cut(s) 228, 274, 424, 587, 1342, 1468, 1586
PleI GAGTC 3 cut(s) 976, 1042, 1105
PmaCI CACGTG 1 cut(s) 1391
PmlI CACGTG 1 cut(s) 1391
PpsI GAGTC 3 cut(s) 976, 1042, 1105
Ppu21I YACGTR 1 cut(s) 1391
PpuMI RGGWCCY 2 cut(s) 1209, 1783
PshBI ATTAAT 1 cut(s) 2367
PsiI TTATAA 1 cut(s) 1698
Psp124BI GAGCTC 1 cut(s) 960
Psp5II RGGWCCY 2 cut(s) 1209, 1783
Psp6I CCWGG 1 cut(s) 1274
PspCI CACGTG 1 cut(s) 1391
PspFI CCCAGC 4 cut(s) 37, 1016, 1043, 1478
PspGI CCWGG 1 cut(s) 1274
PspPI GGNCC 7 cut(s) 365, 1020, 1209, 1311, 1482, 1783, 2269
PspPPI RGGWCCY 2 cut(s) 1209, 1783
PspXI VCTCGAGB 1 cut(s) 866
PstI CTGCAG 1 cut(s) 1918
PstNI CAGNNNCTG 1 cut(s) 1472
PsuI RGATCY 4 cut(s) 853, 1080, 1104, 1790
PvuII CAGCTG 1 cut(s) 817
RsaI GTAC 3 cut(s) 148, 1287, 2662
RsaNI GTAC 3 cut(s) 147, 1286, 2661
RseI CAYNNNNRTG 5 cut(s) 185, 342, 671, 2289, 2567
SacI GAGCTC 1 cut(s) 960
SalI GTCGAC 1 cut(s) 379
SaqAI TTAA 6 cut(s) 24, 141, 750, 986, 2066, 2367
SatI GCNGC 7 cut(s) 227, 273, 423, 586, 1341, 1467, 1585
Sau3AI GATC 9 cut(s) 285, 334, 847, 853, 1080, 1104, 1363, 1790, 2027
Sau96I GGNCC 7 cut(s) 365, 1020, 1209, 1311, 1482, 1783, 2269
ScaI AGTACT 1 cut(s) 1287
SchI GAGTC 3 cut(s) 977, 1042, 1106
ScrFI CCNGG 1 cut(s) 1276
SduI GDGCHC 5 cut(s) 777, 867, 960, 1894, 2284
SfaNI GCATC 6 cut(s) 497, 1131, 1478, 1804, 1822, 2038
SfcI CTRYAG 2 cut(s) 1914, 2640
Sfr274I CTCGAG 1 cut(s) 866
SgrAI CRCCGGYG 1 cut(s) 668
SinI GGWCC 6 cut(s) 365, 1020, 1209, 1311, 1482, 1783
SlaI CTCGAG 1 cut(s) 866
SmiMI CAYNNNNRTG 5 cut(s) 185, 342, 671, 2289, 2567
SmlI CTYRAG 3 cut(s) 866, 1185, 2675
SmoI CTYRAG 3 cut(s) 866, 1185, 2675
SpeI ACTAGT 1 cut(s) 2186
SseBI AGGCCT 3 cut(s) 465, 720, 1426
SsiI CCGC 7 cut(s) 479, 585, 677, 1033, 1108, 1531, 1585
SspI AATATT 2 cut(s) 1702, 1973
SstI GAGCTC 1 cut(s) 960
StuI AGGCCT 3 cut(s) 465, 720, 1426
StyD4I CCNGG 1 cut(s) 1274
StyI CCWWGG 1 cut(s) 2052
TaaI ACNGT 7 cut(s) 136, 146, 518, 1374, 1847, 2017, 2261
TaiI ACGT 2 cut(s) 1393, 2490
TaqI TCGA 8 cut(s) 288, 380, 693, 867, 1560, 2544, 2613, 2714
TaqII GACCGA 1 cut(s) 2179
TatI WGTACW 2 cut(s) 1285, 2660
TauI GCSGC 2 cut(s) 588, 1587
Tru1I TTAA 6 cut(s) 24, 141, 750, 986, 2066, 2367
Tru9I TTAA 6 cut(s) 24, 141, 750, 986, 2066, 2367
TscAI CASTG 5 cut(s) 641, 1197, 1449, 2124, 2624
TseFI GTSAC 3 cut(s) 734, 801, 976
TseI GCWGC 5 cut(s) 226, 272, 422, 1340, 1466
Tsp45I GTSAC 3 cut(s) 734, 801, 976
TspGWI ACGGA 2 cut(s) 924, 961
TspRI CASTG 5 cut(s) 641, 1197, 1449, 2124, 2624
VneI GTGCAC 1 cut(s) 1890
VpaK11BI GGWCC 6 cut(s) 365, 1020, 1209, 1311, 1482, 1783
VspI ATTAAT 1 cut(s) 2367
XapI RAATTY 4 cut(s) 279, 429, 1689, 2728
XbaI TCTAGA 4 cut(s) 1148, 1537, 2201, 2528
XceI RCATGY 1 cut(s) 2498
XhoI CTCGAG 1 cut(s) 866
XmiI GTMKAC 1 cut(s) 380
XmnI GAANNNNTTC 4 cut(s) 1437, 1566, 2104, 2399
ZrmI AGTACT 1 cut(s) 1287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.