Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0011780

Physical Location & Seq

Genomic Coordinates Reverse (-)

21893460 .. 21894230

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1180200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCCTGCGGTCTTTGAACCTGACTCCGCCGGCATCATCCATCCGGCGACTCCTGAGAAAAGGAGCGTGATTCAGATGAACCCGCTCAGCCCCAACATCTTCCGGTTCAAGACCGAGACTCGCCGATCAATGCACTCGCTTTCCCCTTTCGGGTTCCATGATGTGGTCATCGGAGTTCACCATTGCCCGGTCAAGGCTCCTCAGAAGGTTCGCGATCGGTCGCCTTATAAGGTTTTGGATGCAACTACTTTGCAGGACGATTTATACTCGAATTTTGTCGATTGGTCTTCGCACAATGTGCTTGTTGTTGGGTTGGGAAATTTTGTTTATTTATGGAATGTTTGTAGTAGCAAGTTAACTAAGTTATGTGACTTGGGGATTGACGATAGTGTATGTTCCGTTTTCTGGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009653 GO:0009825 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010026 GO:0010073 GO:0010074 GO:0010090 GO:0010091 GO:0010492 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0019827 GO:0022402 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032535 GO:0032875 GO:0032877 GO:0032989 GO:0034641 GO:0034645 GO:0040007 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045740 GO:0045787 GO:0045935 GO:0046483 GO:0048468 GO:0048507 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051726 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090066 GO:0090068 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0098727 GO:1901360 GO:1901576 GO:2000105 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04120 ko04914 map04110 map04111 map04120 map04914

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

138

Amino Acids

15.38

Weight (kDa)

7.0

Isoelectric Point (pI)

63.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	79 - 136	1.5e-14	CDC20/Fizzy WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11920 AT4G22910
fragaria_vesca	FvH4_5g01220 FvH4_5g01220
malus_domestica	MD00G1131600.v1.1 MD04G1070400.v1.1 MD11G1180200.v1.1 MD13G1123600.v1.1
prunus_persica	Prupe.5G087300_v2.0.a1
pyrus_communis	pycom04g06380 pycom06g06850
rosa_chinensis	RchiOBHm_Chr7g0199871
rosa_laevigata	RLG00000003764
rosa_multiflora	Rmu_sc0002748.1_g000015
rosa_roxburghii	Rroxscaffold_3G00256420
rosa_rugosa	Rorug07G0056700
rosa_samantha	Rh7AG181900 Rh7CG191500
rosa_wichuraiana	Rw7G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	228
AccB7I	CCANNNNNTGG	1 cut(s)	163
AccBSI	CCGCTC	1 cut(s)	85
AccII	CGCG	1 cut(s)	213
AciI	CCGC	3 cut(s)	8, 27, 83
AcsI	RAATTY	2 cut(s)	271, 319
AdeI	CACNNNGTG	1 cut(s)	298
AfiI	CCNNNNNNNGG	5 cut(s)	150, 163, 187, 193, 405
AgsI	TTSAA	2 cut(s)	17, 109
Alw26I	GTCTC	1 cut(s)	110
ApoI	RAATTY	2 cut(s)	271, 319
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	279
BccI	CCATC	1 cut(s)	48
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	110
BlpI	GCTNAGC	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	188
BmiI	GGNNCC	2 cut(s)	155, 198
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	2 cut(s)	42, 229
BpiI	GAAGAC	1 cut(s)	279
Bpu1102I	GCTNAGC	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	188
BsaWI	WCCGGW	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	5 cut(s)	150, 163, 187, 193, 405
Bse118I	RCCGGY	1 cut(s)	29
Bse3DI	GCAATG	1 cut(s)	181
BseGI	GGATG	3 cut(s)	36, 40, 244
BseLI	CCNNNNNNNGG	5 cut(s)	150, 163, 187, 193, 405
BseMI	GCAATG	1 cut(s)	181
BseMII	CTCAG	3 cut(s)	45, 100, 215
BseRI	GAGGAG	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	213
Bsh1285I	CGRYCG	2 cut(s)	217, 221
BsiEI	CGRYCG	2 cut(s)	217, 221
BsiSI	CCGG	4 cut(s)	30, 44, 103, 188
BslI	CCNNNNNNNGG	5 cut(s)	150, 163, 187, 193, 405
BsmAI	GTCTC	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	125, 214
Bsp1720I	GCTNAGC	1 cut(s)	86
Bsp68I	TCGCGA	1 cut(s)	213
BspACI	CCGC	3 cut(s)	8, 27, 83
BspCNI	CTCAG	3 cut(s)	46, 99, 214
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	155, 198
BsrBI	CCGCTC	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	181
BsrFI	RCCGGY	1 cut(s)	29
BssAI	RCCGGY	1 cut(s)	29
BssMI	GATC	2 cut(s)	125, 214
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstC8I	GCNNGC	2 cut(s)	6, 31
BstDEI	CTNAG	4 cut(s)	54, 86, 201, 360
BstF5I	GGATG	3 cut(s)	36, 40, 244
BstFNI	CGCG	1 cut(s)	213
BstKTI	GATC	2 cut(s)	128, 217
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	2 cut(s)	125, 214
BstMCI	CGRYCG	2 cut(s)	217, 221
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	186
BstUI	CGCG	1 cut(s)	213
BstV2I	GAAGAC	1 cut(s)	279
BtsCI	GGATG	3 cut(s)	36, 40, 244
BtuMI	TCGCGA	1 cut(s)	213
Cac8I	GCNNGC	2 cut(s)	6, 31
Cfr10I	RCCGGY	1 cut(s)	29
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	2 cut(s)	90, 197
CviKI_1	RGCY	2 cut(s)	90, 197
DdeI	CTNAG	4 cut(s)	54, 86, 201, 360
DpnI	GATC	2 cut(s)	127, 216
DpnII	GATC	2 cut(s)	125, 214
DraIII	CACNNNGTG	1 cut(s)	298
EciI	GGCGGA	1 cut(s)	16
FaeI	CATG	1 cut(s)	161
FaiI	YATR	6 cut(s)	159, 228, 265, 334, 367, 394
FatI	CATG	1 cut(s)	157
FauI	CCCGC	1 cut(s)	90
FokI	GGATG	3 cut(s)	23, 27, 251
HapII	CCGG	4 cut(s)	30, 44, 103, 188
Hin1II	CATG	1 cut(s)	161
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HinfI	GANTC	4 cut(s)	23, 49, 70, 118
HpaI	GTTAAC	1 cut(s)	357
HpaII	CCGG	4 cut(s)	30, 44, 103, 188
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	2 cut(s)	178, 357
Hpy188I	TCNGA	3 cut(s)	75, 173, 204
Hpy188III	TCNNGA	3 cut(s)	53, 109, 212
Hpy8I	GTNNAC	2 cut(s)	178, 357
HpyAV	CCTTC	1 cut(s)	199
HpyCH4V	TGCA	3 cut(s)	133, 242, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpyF3I	CTNAG	4 cut(s)	54, 86, 201, 360
Hsp92II	CATG	1 cut(s)	161
KroI	GCCGGC	1 cut(s)	29
KroNI	GCCGGC	1 cut(s)	31
KspAI	GTTAAC	1 cut(s)	357
Kzo9I	GATC	2 cut(s)	125, 214
LmnI	GCTCC	2 cut(s)	63, 202
LpnPI	CCDG	9 cut(s)	18, 33, 43, 57, 66, 116, 201, 239, 391
LweI	GCATC	2 cut(s)	42, 229
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	2 cut(s)	127, 216
MbiI	CCGCTC	1 cut(s)	85
MboI	GATC	2 cut(s)	125, 214
MboII	GAAGA	2 cut(s)	91, 279
MluCI	AATT	2 cut(s)	271, 319
MlyI	GAGTC	3 cut(s)	17, 43, 112
MnlI	CCTC	1 cut(s)	210
MroNI	GCCGGC	1 cut(s)	29
MseI	TTAA	2 cut(s)	356, 412
MspI	CCGG	4 cut(s)	30, 44, 103, 188
MspR9I	CCNGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	298
NaeI	GCCGGC	1 cut(s)	31
NciI	CCSGG	1 cut(s)	188
NdeII	GATC	2 cut(s)	125, 214
NgoMIV	GCCGGC	1 cut(s)	29
NlaIII	CATG	1 cut(s)	161
NlaIV	GGNNCC	2 cut(s)	155, 198
NmuCI	GTSAC	1 cut(s)	368
NruI	TCGCGA	1 cut(s)	213
PdiI	GCCGGC	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	70
PflMI	CCANNNNNTGG	1 cut(s)	163
Ple19I	CGATCG	1 cut(s)	217
PleI	GAGTC	3 cut(s)	17, 43, 112
PpsI	GAGTC	3 cut(s)	17, 43, 112
PsiI	TTATAA	1 cut(s)	228
PspN4I	GGNNCC	2 cut(s)	155, 198
PvuI	CGATCG	1 cut(s)	217
RruI	TCGCGA	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	356, 412
Sau3AI	GATC	2 cut(s)	125, 214
SchI	GAGTC	3 cut(s)	17, 43, 112
ScrFI	CCNGG	1 cut(s)	188
SetI	ASST	3 cut(s)	22, 210, 234
SfaNI	GCATC	2 cut(s)	42, 229
Sse9I	AATT	2 cut(s)	271, 319
SsiI	CCGC	3 cut(s)	8, 27, 83
StyD4I	CCNGG	1 cut(s)	186
TaqI	TCGA	2 cut(s)	269, 279
TaqII	GACCGA	2 cut(s)	128, 207
TasI	AATT	2 cut(s)	271, 319
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	2 cut(s)	356, 412
Tru9I	TTAA	2 cut(s)	356, 412
TseFI	GTSAC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	1 cut(s)	92
TspGWI	ACGGA	1 cut(s)	388
Van91I	CCANNNNNTGG	1 cut(s)	163
XapI	RAATTY	2 cut(s)	271, 319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.