Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0011780

Physical Location & Seq

Genomic Coordinates Reverse (-)

16311231 .. 16315107

Gene Structure 3877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G015960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGGACGATCCTATGCTATCTTCTTCTTCTTCTTCTACGCAGCTCAATCAGCCGCCGCCGACGCTGCCGCGGACCCCTCTGGCGGTCCAGCCGGAGACGCCGGCCCGGCACATCGAGCGAATGCTGAACGTCAACCACCACCACCGATCGCCGTCGCGGACTATCTACTCCGATAGGTTCATACCCAGCAGATCCGGCTCTAACTTTGGTTTGTTCGACATCAAATCGCCGACGAATTCTCAGTCCGACGAGACCTCCAGCGCCTACACCACGCTCCTACGCGCCGCCCTCTTCGGCCCCGACACCGCCGGCGTGATTCCTCCGGCGACCCCCGATCGGCGGGGGCTGATGAACCCGCCGAACCAGAATATATTCCGGTTCAAGAGCGAGACGCGGCGGTCCATGCACTCGCTGCTGCCGTTTGGGTTTGACGATGACGTGGTCACCGGAGTTCATCATAGTCCGGTGAAGACCCCCAGGAAGGTCCCCAGGTCGCCGTATAAGGTTTTGGATGCACCGGCTTTGCAAGACGATTTCTATCTGAATCTGGTGGATTGGTCTTCGCATAATGTATTGGCTGTGGGGTTGGGGAACTGTGTTTATTTGTGGAATGCTTGTAGTAGTAAGGTAACTAAGTTATGCGATTTGGGGACTGATGATAGTGTCTGTTCGGTTGGCTGGGCGCAGCGGGGAACTCATCTTGCTGTGGGAACTGGCAATGGGAAAGTCCAAATTTGGGATGCATCTCGCTGTAAGAGGGTAAGAACTATGGAGGGCCATCGTCTACGTATTGGGGCATTGGCCTGGAGTTCATCCATGTTGTCTTCTGGTAGCCGTGACAAGAGTATTCTTCAGCGGGATATACGCGCTCAGGAAGATTTCGTTAGCAAACTTTCTGGACATAAGTCAGAGGTTTGTGGACTGAAGTGGTCTTATGACAACCGTGAGTTGGCATCAGGCGGGAATGATAATAGACTTTTTGTTTGGAATCAACATTCAACTCAACCCGTGCTGAAATACTGTGAGCATACTGCTGCCGTGAAAGCTATTGCATGGTCCCCCCATCTTCATGGACTTCTTGCATCTGGGGGAGGAACTGCAGACCGATGTATCCGTTTCTGGAATACAACCACTAACTCTCACTTGAGCTGCATGGACACTGGAAGTCAGGTTTGCAATCTTGTGTGGTCCAAAAATGTCAATGAGCTCGTCAGCACGCACGGGTACTCCCAAAATCAGATAATAGTTTGGAGATATCCTACGATGTCCAAGCTGGCAACTCTCACGGGCCATACTTATAGAGTTCTTTATCTTGCCATCTCACCTGACGGACAGACAATTGTCACAGGAGCAGGAGATGAAACACTTAGGTTTTGGAATGTGTTTCCTTCCCCTAAATCTCAGAATACGGGAAGTGAAATCGGAGCATCATGTCTAGGCAGAACCATCATCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009653 GO:0009825 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010026 GO:0010073 GO:0010074 GO:0010090 GO:0010091 GO:0010492 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0019827 GO:0022402 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032535 GO:0032875 GO:0032877 GO:0032989 GO:0034641 GO:0034645 GO:0040007 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045740 GO:0045787 GO:0045935 GO:0046483 GO:0048468 GO:0048507 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051726 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090066 GO:0090068 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0098727 GO:1901360 GO:1901576 GO:2000105 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04120 ko04914 map04110 map04111 map04120 map04914

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

485

Amino Acids

53.55

Weight (kDa)

9.22

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	170 - 459	8.1e-128	CDC20/Fizzy WD40 domain
WD40_WDHD1_1st	PF24817	182 - 271	2.1e-08	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	188 - 353	4.9e-17	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR19_1st	PF23389	190 - 283	4.5e-12	WDR19 first beta-propeller
Beta-prop_WDR3_1st	PF25173	191 - 292	2.9e-13	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	199 - 283	2.9e-09	THOC3 beta-propeller domain
ANAPC4_WD40	PF12894	210 - 271	9.3e-06	Anaphase-promoting complex subunit 4 WD40 domain
Beta-prop_WDR5	PF25175	218 - 399	1.5e-23	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	218 - 283	6.1e-06	WDR3 second beta-propeller domain
WDR55	PF24796	218 - 464	2.9e-11	WDR55
WD40_MABP1-WDR62_2nd	PF24782	220 - 460	1.7e-14	MABP1/WDR62 second WD40 domain
Beta-prop_TEP1_2nd	PF25047	222 - 394	2.6e-10	TEP-1 second beta-propeller
WD40_Prp19	PF24814	272 - 460	3.4e-17	Prp19 WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	289 - 381	4.2e-10	CAF1B/HIR1 beta-propeller domain
WD40_WDHD1_1st	PF24817	290 - 358	2.5e-06	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	293 - 405	1.4e-14	WDR3 first beta-propeller domain
WD40	PF00400	294 - 330	4.3e-07	WD domain, G-beta repeat
WD40_Gbeta	PF25391	296 - 465	1.9e-12	G protein beta WD-40 repeat protein
Beta-prop_THOC3	PF25174	301 - 407	7.7e-19	THOC3 beta-propeller domain
Beta-prop_Aladin	PF25460	301 - 461	2.5e-08	Aladin seven-bladed propeller
Beta-prop_EML	PF23409	340 - 462	2.6e-10	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR5	PF25175	342 - 461	1.1e-13	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	343 - 461	1.6e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	367 - 464	2.5e-08	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	390 - 461	2.4e-08	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	410 - 461	2.6e-08	THOC3 beta-propeller domain
WD40	PF00400	424 - 460	1e-07	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11920 AT4G22910
fragaria_vesca	FvH4_5g01220 FvH4_5g01220
malus_domestica	MD00G1131600.v1.1 MD04G1070400.v1.1 MD11G1180200.v1.1 MD13G1123600.v1.1
prunus_persica	Prupe.5G087300_v2.0.a1
pyrus_communis	pycom04g06380 pycom06g06850
rosa_chinensis	RchiOBHm_Chr7g0199871
rosa_laevigata	RLG00000003764
rosa_multiflora	Rmu_sc0002748.1_g000015
rosa_roxburghii	Rroxscaffold_3G00256420
rosa_rugosa	Rorug07G0056700
rosa_samantha	Rh7AG181900 Rh7CG191500
rosa_wichuraiana	Rw7G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	397
AccI	GTMKAC	1 cut(s)	784
AccII	CGCG	5 cut(s)	70, 157, 282, 394, 867
AclWI	GGATC	2 cut(s)	2, 186
AcsI	RAATTY	2 cut(s)	235, 732
AcuI	CTGAAG	2 cut(s)	836, 944
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	1 cut(s)	1226
AfiI	CCNNNNNNNGG	7 cut(s)	82, 336, 339, 481, 736, 949, 1452
AgsI	TTSAA	2 cut(s)	382, 999
AjiI	CACGTC	1 cut(s)	439
AjnI	CCWGG	3 cut(s)	476, 488, 803
AluBI	AGCT	5 cut(s)	43, 1046, 1149, 1207, 1273
AluI	AGCT	5 cut(s)	43, 1046, 1149, 1207, 1273
Alw21I	GWGCWC	1 cut(s)	1209
Alw26I	GTCTC	3 cut(s)	89, 245, 383
AlwI	GGATC	2 cut(s)	2, 186
AoxI	GGCC	5 cut(s)	102, 295, 775, 801, 1288
ApeKI	GCWGC	7 cut(s)	40, 64, 412, 415, 685, 1034, 1149
ApoI	RAATTY	2 cut(s)	235, 732
ArsI	GACNNNNNNTTYG	4 cut(s)	227, 259, 966, 998
Asp700I	GAANNNNTTC	1 cut(s)	371
AspLEI	GCGC	4 cut(s)	263, 284, 685, 869
AsuC2I	CCSGG	1 cut(s)	106
AsuHPI	GGTGA	3 cut(s)	436, 478, 1314
AvaII	GGWCC	6 cut(s)	72, 85, 399, 484, 1056, 1188
BaeI	ACNNNNGTAYC	2 cut(s)	1093, 1126
BanII	GRGCYC	1 cut(s)	1209
BbsI	GAAGAC	3 cut(s)	476, 552, 816
Bbv12I	GWGCWC	1 cut(s)	1209
BbvI	GCAGC	7 cut(s)	51, 52, 399, 402, 697, 1021, 1136
BccI	CCATC	4 cut(s)	786, 1071, 1325, 1454
BceAI	ACGGC	5 cut(s)	136, 403, 481, 819, 1022
BciT130I	CCWGG	3 cut(s)	478, 490, 805
BciVI	GTATCC	1 cut(s)	1121
BcnI	CCSGG	1 cut(s)	106
BcoDI	GTCTC	3 cut(s)	89, 245, 383
BfaI	CTAG	1 cut(s)	1436
BfmI	CTRYAG	1 cut(s)	1098
BfoI	RGCGCY	1 cut(s)	264
BfuI	GTATCC	1 cut(s)	1121
BglI	GCCNNNNNGGC	1 cut(s)	106
Bme1390I	CCNGG	4 cut(s)	106, 478, 490, 805
Bme18I	GGWCC	6 cut(s)	72, 85, 399, 484, 1056, 1188
BmgBI	CACGTC	1 cut(s)	439
BmiI	GGNNCC	4 cut(s)	74, 298, 486, 1058
BmrFI	CCNGG	4 cut(s)	106, 478, 490, 805
BmsI	GCATC	6 cut(s)	502, 730, 752, 962, 1091, 1436
BoxI	GACNNNNGTC	2 cut(s)	904, 1340
BpiI	GAAGAC	3 cut(s)	476, 552, 816
BpmI	CTGGAG	2 cut(s)	241, 826
Bpu10I	CCTNAGC	1 cut(s)	870
BpuEI	CTTGAG	1 cut(s)	1165
BpuMI	CCSGG	1 cut(s)	106
BsaAI	YACGTR	1 cut(s)	788
BsaBI	GATNNNNATC	1 cut(s)	537
BsaHI	GRCGYC	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	3 cut(s)	68, 476, 488
BsaWI	WCCGGW	3 cut(s)	375, 446, 463
BsaXI	ACNNNNNCTCC	4 cut(s)	239, 269, 1211, 1241
Bsc4I	CCNNNNNNNGG	7 cut(s)	82, 336, 339, 481, 736, 949, 1452
Bse118I	RCCGGY	3 cut(s)	100, 308, 517
Bse1I	ACTGG	2 cut(s)	718, 1165
Bse3DI	GCAATG	1 cut(s)	724
Bse8I	GATNNNNATC	1 cut(s)	537
BseBI	CCWGG	3 cut(s)	478, 490, 805
BseDI	CCNNGG	3 cut(s)	68, 476, 488
BseGI	GGATG	3 cut(s)	517, 745, 812
BseJI	GATNNNNATC	1 cut(s)	537
BseLI	CCNNNNNNNGG	7 cut(s)	82, 336, 339, 481, 736, 949, 1452
BseMI	GCAATG	1 cut(s)	724
BseMII	CTCAG	3 cut(s)	254, 884, 1415
BseNI	ACTGG	2 cut(s)	718, 1165
BseXI	GCAGC	7 cut(s)	51, 52, 399, 402, 697, 1021, 1136
BseYI	CCCAGC	2 cut(s)	185, 678
Bsh1236I	CGCG	5 cut(s)	70, 157, 282, 394, 867
Bsh1285I	CGRYCG	2 cut(s)	149, 337
BshFI	GGCC	5 cut(s)	104, 297, 777, 803, 1290
BsiEI	CGRYCG	2 cut(s)	149, 337
BsiHKAI	GWGCWC	1 cut(s)	1209
BslFI	GGGAC	3 cut(s)	470, 664, 1042
BslI	CCNNNNNNNGG	7 cut(s)	82, 336, 339, 481, 736, 949, 1452
BsmAI	GTCTC	3 cut(s)	89, 245, 383
BsmBI	CGTCTC	2 cut(s)	89, 383
BsmFI	GGGAC	3 cut(s)	470, 664, 1042
BsmI	GAATGC	2 cut(s)	126, 616
BsnI	GGCC	5 cut(s)	104, 297, 777, 803, 1290
Bso31I	GGTCTC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	1209
Bsp143I	GATC	4 cut(s)	7, 146, 191, 334
BspANI	GGCC	5 cut(s)	104, 297, 777, 803, 1290
BspCNI	CTCAG	3 cut(s)	253, 883, 1414
BspFNI	CGCG	5 cut(s)	70, 157, 282, 394, 867
BspLI	GGNNCC	4 cut(s)	74, 298, 486, 1058
BspMAI	CTGCAG	1 cut(s)	1102
BspPI	GGATC	2 cut(s)	2, 186
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	724
BsrFI	RCCGGY	3 cut(s)	100, 308, 517
BsrI	ACTGG	2 cut(s)	718, 1165
BssAI	RCCGGY	3 cut(s)	100, 308, 517
BssECI	CCNNGG	3 cut(s)	68, 476, 488
BssMI	GATC	4 cut(s)	7, 146, 191, 334
BssNI	GRCGYC	1 cut(s)	98
Bst2UI	CCWGG	3 cut(s)	478, 490, 805
Bst4CI	ACNGT	3 cut(s)	596, 944, 1022
Bst6I	CTCTTC	1 cut(s)	296
BstACI	GRCGYC	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	412
BstBAI	YACGTR	1 cut(s)	788
BstC8I	GCNNGC	4 cut(s)	102, 310, 1217, 1275
BstDEI	CTNAG	5 cut(s)	240, 633, 870, 1367, 1401
BstDSI	CCRYGG	1 cut(s)	68
BstEII	GGTNACC	1 cut(s)	442
BstF5I	GGATG	3 cut(s)	517, 745, 812
BstFNI	CGCG	5 cut(s)	70, 157, 282, 394, 867
BstH2I	RGCGCY	1 cut(s)	264
BstHHI	GCGC	4 cut(s)	263, 284, 685, 869
BstKTI	GATC	4 cut(s)	10, 149, 194, 337
BstMAI	GTCTC	3 cut(s)	89, 245, 383
BstMBI	GATC	4 cut(s)	7, 146, 191, 334
BstMCI	CGRYCG	2 cut(s)	149, 337
BstNI	CCWGG	3 cut(s)	478, 490, 805
BstPAI	GACNNNNGTC	2 cut(s)	904, 1340
BstPI	GGTNACC	1 cut(s)	442
BstSCI	CCNGG	4 cut(s)	104, 476, 488, 803
BstSFI	CTRYAG	1 cut(s)	1098
BstSNI	TACGTA	1 cut(s)	788
BstUI	CGCG	5 cut(s)	70, 157, 282, 394, 867
BstV1I	GCAGC	7 cut(s)	51, 52, 399, 402, 697, 1021, 1136
BstV2I	GAAGAC	3 cut(s)	476, 552, 816
BstX2I	RGATCY	1 cut(s)	191
BstXI	CCANNNNNNTGG	1 cut(s)	1070
BstYI	RGATCY	1 cut(s)	191
BsuI	GTATCC	1 cut(s)	1121
BsuRI	GGCC	5 cut(s)	104, 297, 777, 803, 1290
BtgI	CCRYGG	1 cut(s)	68
BtrI	CACGTC	1 cut(s)	439
BtsCI	GGATG	3 cut(s)	517, 745, 812
BtsIMutI	CAGTG	1 cut(s)	1158
Cac8I	GCNNGC	4 cut(s)	102, 310, 1217, 1275
CfoI	GCGC	4 cut(s)	263, 284, 685, 869
Cfr10I	RCCGGY	3 cut(s)	100, 308, 517
Cfr42I	CCGCGG	1 cut(s)	71
CseI	GACGC	3 cut(s)	70, 106, 400
Csp6I	GTAC	1 cut(s)	1225
CviAII	CATG	6 cut(s)	403, 817, 1053, 1070, 1153, 1431
CviQI	GTAC	1 cut(s)	1225
DdeI	CTNAG	5 cut(s)	240, 633, 870, 1367, 1401
DpnI	GATC	4 cut(s)	9, 148, 193, 336
DpnII	GATC	4 cut(s)	7, 146, 191, 334
DrdI	GACNNNNNNGTC	1 cut(s)	397
DseDI	GACNNNNNNGTC	1 cut(s)	397
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Ecl136II	GAGCTC	1 cut(s)	1207
Eco105I	TACGTA	1 cut(s)	788
Eco24I	GRGCYC	1 cut(s)	1209
Eco31I	GGTCTC	1 cut(s)	245
Eco32I	GATATC	1 cut(s)	1256
Eco47I	GGWCC	6 cut(s)	72, 85, 399, 484, 1056, 1188
Eco53kI	GAGCTC	1 cut(s)	1207
Eco57I	CTGAAG	2 cut(s)	836, 944
Eco91I	GGTNACC	1 cut(s)	442
EcoICRI	GAGCTC	1 cut(s)	1207
EcoO109I	RGGNCCY	1 cut(s)	484
EcoO65I	GGTNACC	1 cut(s)	442
EcoRI	GAATTC	1 cut(s)	235
EcoRII	CCWGG	3 cut(s)	476, 488, 803
EcoRV	GATATC	1 cut(s)	1256
EcoT22I	ATGCAT	1 cut(s)	745
EcoT38I	GRGCYC	1 cut(s)	1209
Esp3I	CGTCTC	2 cut(s)	89, 383
FaeI	CATG	6 cut(s)	406, 820, 1056, 1073, 1156, 1434
FaqI	GGGAC	3 cut(s)	470, 664, 1042
FatI	CATG	6 cut(s)	402, 816, 1052, 1069, 1152, 1430
FauI	CCCGC	5 cut(s)	333, 363, 681, 849, 953
FblI	GTMKAC	1 cut(s)	784
FokI	GGATG	3 cut(s)	524, 752, 799
FriOI	GRGCYC	1 cut(s)	1209
FspBI	CTAG	1 cut(s)	1436
GlaI	GCGC	4 cut(s)	262, 283, 684, 868
GsaI	CCCAGC	2 cut(s)	189, 682
GsuI	CTGGAG	2 cut(s)	241, 826
HaeII	RGCGCY	1 cut(s)	264
HaeIII	GGCC	5 cut(s)	104, 297, 777, 803, 1290
HgaI	GACGC	3 cut(s)	70, 106, 400
HhaI	GCGC	4 cut(s)	263, 284, 685, 869
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	6 cut(s)	406, 820, 1056, 1073, 1156, 1434
Hin6I	GCGC	4 cut(s)	261, 282, 683, 867
HinP1I	GCGC	4 cut(s)	261, 282, 683, 867
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	3 cut(s)	316, 544, 988
HphI	GGTGA	3 cut(s)	436, 478, 1314
Hpy166II	GTNNAC	3 cut(s)	133, 785, 920
Hpy188I	TCNGA	7 cut(s)	172, 247, 543, 910, 1239, 1404, 1424
Hpy188III	TCNNGA	4 cut(s)	382, 872, 897, 1120
Hpy8I	GTNNAC	3 cut(s)	133, 785, 920
Hpy99I	CGWCG	4 cut(s)	64, 157, 235, 251
HpyAV	CCTTC	2 cut(s)	475, 1398
HpyCH4III	ACNGT	3 cut(s)	596, 944, 1022
HpyCH4IV	ACGT	3 cut(s)	129, 438, 787
HpyCH4V	TGCA	9 cut(s)	406, 515, 526, 743, 1052, 1082, 1100, 1152, 1176
HpyF3I	CTNAG	5 cut(s)	240, 633, 870, 1367, 1401
HpySE526I	ACGT	3 cut(s)	129, 438, 787
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	6 cut(s)	406, 820, 1056, 1073, 1156, 1434
HspAI	GCGC	4 cut(s)	261, 282, 683, 867
KroI	GCCGGC	2 cut(s)	100, 308
KroNI	GCCGGC	2 cut(s)	102, 310
KspI	CCGCGG	1 cut(s)	71
Kzo9I	GATC	4 cut(s)	7, 146, 191, 334
LmnI	GCTCC	3 cut(s)	279, 1349, 1424
Lsp1109I	GCAGC	7 cut(s)	51, 52, 399, 402, 697, 1021, 1136
LweI	GCATC	6 cut(s)	502, 730, 752, 962, 1091, 1436
MaeI	CTAG	1 cut(s)	1436
MaeII	ACGT	3 cut(s)	129, 438, 787
MaeIII	GTNAC	4 cut(s)	442, 628, 836, 1342
MalI	GATC	4 cut(s)	9, 148, 193, 336
MboI	GATC	4 cut(s)	7, 146, 191, 334
MfeI	CAATTG	1 cut(s)	1338
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	1209
MluCI	AATT	3 cut(s)	235, 732, 1338
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	8 cut(s)	87, 265, 299, 330, 750, 766, 904, 1085
Mph1103I	ATGCAT	1 cut(s)	745
MreI	CGCCGGCG	1 cut(s)	308
MroNI	GCCGGC	2 cut(s)	100, 308
MroXI	GAANNNNTTC	1 cut(s)	371
MslI	CAYNNNNRTG	1 cut(s)	1068
MspA1I	CMGCKG	3 cut(s)	70, 688, 856
MspR9I	CCNGG	4 cut(s)	106, 478, 490, 805
MunI	CAATTG	1 cut(s)	1338
Mva1269I	GAATGC	2 cut(s)	126, 616
MvaI	CCWGG	3 cut(s)	478, 490, 805
MvnI	CGCG	5 cut(s)	70, 157, 282, 394, 867
NaeI	GCCGGC	2 cut(s)	102, 310
NciI	CCSGG	1 cut(s)	106
NdeII	GATC	4 cut(s)	7, 146, 191, 334
NgoMIV	GCCGGC	2 cut(s)	100, 308
NlaIII	CATG	6 cut(s)	406, 820, 1056, 1073, 1156, 1434
NlaIV	GGNNCC	4 cut(s)	74, 298, 486, 1058
NmuCI	GTSAC	3 cut(s)	442, 836, 1342
NsiI	ATGCAT	1 cut(s)	745
PcsI	WCGNNNNNNNCGW	1 cut(s)	416
PctI	GAATGC	2 cut(s)	126, 616
PdiI	GCCGGC	2 cut(s)	102, 310
PdmI	GAANNNNTTC	1 cut(s)	371
PfeI	GAWTC	3 cut(s)	316, 544, 988
PflFI	GACNNNGTC	1 cut(s)	440
Ple19I	CGATCG	2 cut(s)	149, 337
Ppu21I	YACGTR	1 cut(s)	788
PpuMI	RGGWCCY	1 cut(s)	484
PshAI	GACNNNNGTC	2 cut(s)	904, 1340
Psp124BI	GAGCTC	1 cut(s)	1209
Psp5II	RGGWCCY	1 cut(s)	484
Psp6I	CCWGG	3 cut(s)	476, 488, 803
PspEI	GGTNACC	1 cut(s)	442
PspFI	CCCAGC	2 cut(s)	185, 678
PspGI	CCWGG	3 cut(s)	476, 488, 803
PspN4I	GGNNCC	4 cut(s)	74, 298, 486, 1058
PspPPI	RGGWCCY	1 cut(s)	484
PstI	CTGCAG	1 cut(s)	1102
PsuI	RGATCY	1 cut(s)	191
PsyI	GACNNNGTC	1 cut(s)	440
PvuI	CGATCG	2 cut(s)	149, 337
RsaI	GTAC	1 cut(s)	1226
RsaNI	GTAC	1 cut(s)	1225
RseI	CAYNNNNRTG	1 cut(s)	1068
SacI	GAGCTC	1 cut(s)	1209
SacII	CCGCGG	1 cut(s)	71
Sau3AI	GATC	4 cut(s)	7, 146, 191, 334
ScrFI	CCNGG	4 cut(s)	106, 478, 490, 805
SduI	GDGCHC	1 cut(s)	1209
SfaNI	GCATC	6 cut(s)	502, 730, 752, 962, 1091, 1436
SfcI	CTRYAG	1 cut(s)	1098
Sfr303I	CCGCGG	1 cut(s)	71
SgrAI	CRCCGGYG	1 cut(s)	308
SgrBI	CCGCGG	1 cut(s)	71
SinI	GGWCC	6 cut(s)	72, 85, 399, 484, 1056, 1188
SmiMI	CAYNNNNRTG	1 cut(s)	1068
SmlI	CTYRAG	1 cut(s)	1144
SmoI	CTYRAG	1 cut(s)	1144
SnaBI	TACGTA	1 cut(s)	788
Sse9I	AATT	3 cut(s)	235, 732, 1338
SspMI	CTAG	1 cut(s)	1436
SstI	GAGCTC	1 cut(s)	1209
StyD4I	CCNGG	4 cut(s)	104, 476, 488, 803
TaaI	ACNGT	3 cut(s)	596, 944, 1022
TaiI	ACGT	3 cut(s)	132, 441, 790
TaqI	TCGA	2 cut(s)	114, 216
TaqII	GACCGA	1 cut(s)	1119
TasI	AATT	3 cut(s)	235, 732, 1338
TauI	GCSGC	5 cut(s)	55, 58, 70, 287, 397
TfiI	GAWTC	3 cut(s)	316, 544, 988
TscAI	CASTG	1 cut(s)	1165
TseFI	GTSAC	3 cut(s)	442, 836, 1342
TseI	GCWGC	7 cut(s)	40, 64, 412, 415, 685, 1034, 1149
Tsp45I	GTSAC	3 cut(s)	442, 836, 1342
TspDTI	ATGAA	6 cut(s)	169, 365, 443, 801, 1058, 1374
TspGWI	ACGGA	2 cut(s)	1103, 1344
TspRI	CASTG	1 cut(s)	1165
Tth111I	GACNNNGTC	1 cut(s)	440
VpaK11BI	GGWCC	6 cut(s)	72, 85, 399, 484, 1056, 1188
XapI	RAATTY	2 cut(s)	235, 732
XmiI	GTMKAC	1 cut(s)	784
XmnI	GAANNNNTTC	1 cut(s)	371
XspI	CTAG	1 cut(s)	1436
Zsp2I	ATGCAT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.