Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011780

Physical Location & Seq

Genomic Coordinates Forward (+)

9188103 .. 9188739

Gene Structure 637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1123600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGCACTCGCCTTCCCCTTTTGGGTTCGATGATGTGGTCACCGGAGTTCACCATAGCCCCGTCAAGGCTCCTCTGAAGGTTCCCCGGTCGCCTTATAAGGTTTTGGATGCACCTGCTTTGCAGGATGATTTCTATCTGAATCTTGTCGATTGGTCTTCGCACAATGTCTGTTGGGTTGGGAAATTGTGTTTATTTATGGAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009653 GO:0009825 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010026 GO:0010073 GO:0010074 GO:0010090 GO:0010091 GO:0010492 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0019827 GO:0022402 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032535 GO:0032875 GO:0032877 GO:0032989 GO:0034641 GO:0034645 GO:0040007 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045740 GO:0045787 GO:0045935 GO:0046483 GO:0048468 GO:0048507 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051726 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090066 GO:0090068 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0098727 GO:1901360 GO:1901576 GO:2000105 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04120 ko04914 map04110 map04111 map04120 map04914

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

69

Amino Acids

7.64

Weight (kDa)

5.98

Isoelectric Point (pI)

87.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	35 - 60	3e-07	CDC20/Fizzy WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11920 AT4G22910
fragaria_vesca	FvH4_5g01220 FvH4_5g01220
malus_domestica	MD00G1131600.v1.1 MD04G1070400.v1.1 MD11G1180200.v1.1 MD13G1123600.v1.1
prunus_persica	Prupe.5G087300_v2.0.a1
pyrus_communis	pycom04g06380 pycom06g06850
rosa_chinensis	RchiOBHm_Chr7g0199871
rosa_laevigata	RLG00000003764
rosa_multiflora	Rmu_sc0002748.1_g000015
rosa_roxburghii	Rroxscaffold_3G00256420
rosa_rugosa	Rorug07G0056700
rosa_samantha	Rh7AG181900 Rh7CG191500
rosa_wichuraiana	Rw7G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	96
AarI	CACCTGC	1 cut(s)	121
Acc36I	ACCTGC	1 cut(s)	121
AcuI	CTGAAG	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	21, 64
AsuC2I	CCSGG	1 cut(s)	85
AsuHPI	GGTGA	2 cut(s)	31, 41
BbsI	GAAGAC	1 cut(s)	147
BcnI	CCSGG	1 cut(s)	85
BfuAI	ACCTGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	85
BmiI	GGNNCC	2 cut(s)	69, 81
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	1 cut(s)	97
BpiI	GAAGAC	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	85
BsaBI	GATNNNNATC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	83
BsaWI	WCCGGW	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 64
Bse8I	GATNNNNATC	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	83
BseGI	GGATG	2 cut(s)	112, 130
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	2 cut(s)	21, 64
BseRI	GAGGAG	1 cut(s)	60
Bsh1285I	CGRYCG	1 cut(s)	89
BsiEI	CGRYCG	1 cut(s)	89
BsiSI	CCGG	2 cut(s)	42, 85
BslI	CCNNNNNNNGG	2 cut(s)	21, 64
BspLI	GGNNCC	2 cut(s)	69, 81
BspMI	ACCTGC	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	83
BstEII	GGTNACC	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	112, 130
BstMCI	CGRYCG	1 cut(s)	89
BstPI	GGTNACC	1 cut(s)	37
BstSCI	CCNGG	1 cut(s)	83
BstV2I	GAAGAC	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	112, 130
BveI	ACCTGC	1 cut(s)	121
CviJI	RGCY	2 cut(s)	57, 68
CviKI_1	RGCY	2 cut(s)	57, 68
Eco57I	CTGAAG	1 cut(s)	95
Eco91I	GGTNACC	1 cut(s)	37
EcoO65I	GGTNACC	1 cut(s)	37
FaiI	YATR	3 cut(s)	54, 96, 197
FokI	GGATG	2 cut(s)	119, 137
HapII	CCGG	2 cut(s)	42, 85
HinfI	GANTC	1 cut(s)	139
HpaII	CCGG	2 cut(s)	42, 85
HphI	GGTGA	2 cut(s)	31, 41
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	2 cut(s)	75, 138
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	2 cut(s)	21, 70
HpyCH4V	TGCA	3 cut(s)	4, 110, 121
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	4 cut(s)	55, 98, 107, 126
LweI	GCATC	1 cut(s)	97
MaeIII	GTNAC	1 cut(s)	37
MboII	GAAGA	1 cut(s)	147
MluCI	AATT	1 cut(s)	182
MnlI	CCTC	1 cut(s)	81
MspI	CCGG	2 cut(s)	42, 85
MspR9I	CCNGG	1 cut(s)	85
NciI	CCSGG	1 cut(s)	85
NlaIV	GGNNCC	2 cut(s)	69, 81
NmuCI	GTSAC	1 cut(s)	37
PaqCI	CACCTGC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	139
PsiI	TTATAA	1 cut(s)	96
PspEI	GGTNACC	1 cut(s)	37
PspN4I	GGNNCC	2 cut(s)	69, 81
ScrFI	CCNGG	1 cut(s)	85
SetI	ASST	3 cut(s)	81, 102, 115
SfaNI	GCATC	1 cut(s)	97
SgeI	CNNG	9 cut(s)	19, 54, 71, 76, 96, 97, 125, 134, 155
Sse9I	AATT	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	83
TaqI	TCGA	2 cut(s)	27, 147
TasI	AATT	1 cut(s)	182
TfiI	GAWTC	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.