Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0011780

Physical Location & Seq

Genomic Coordinates Reverse (-)

16910372 .. 16914862

Gene Structure 4491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG191500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGGACGATCCTATGCTATCTTCTTCTTCTTCTTCTTCTTCTACGCAGCTCAATCAGCCGCCGCCGACGCTGCCGCGGACCCCTCTGGCGGTCCAGCCGGAGACGCCGGCCCGGCACATCGAGCGAATGCTGAACGTCAACCACCACCACCGATCGCCGTCGCGGACCATCTACTCCGATAGGTTCATACCCAGCAGATCCGGCTCTAACTTTGGTTTGTTCGACATCAAATCGCCAACGAATTCTCAGTCCGACGAGACCTCCAGCGCCTACACCACGCTCCTACGCGCAGCCCTCTTCGGCCCCGACACCGCCGGCGTGATTCCTCCGGCGACCCCCGATCGGCGGGGGCTGATGAACCCGCCGAACCAGAATATATTCCGGTTCAAGAGCGAGACGCGGCGGTCCATGCACTCGCTGCTGCCGTTTGGGTTTGATGACGACGTGGTCACCGGAGTTCATCATAGTCCGGTGAAGACCCCCAGGAAGGTCCCCAGGTCGCCCTATAAGGTTTTGGATGCACCGGCTTTGCAAGACGATTTCTATCTGAATCTGGTGGATTGGTCTTCGCATAATGTATTGGCTGTGGGGTTGGGGAACTGTGTTTATTTGTGGAATGCTTGTAGTAGTAAGGTAACTAAGTTATGCGATTTGGGGACTGATGATAGTGTCTGTTCGGTTGGCTGGGCGCAGCGGGGAACTCATCTTGCTGTGGGAACTGGCAATGGGAAAGTCCAAATTTGGGATGCATCTCGCTGTAAGAGGGTAAGAACTATGGAGGGCCATCGTCTACGTATTGGGGCATTGGCCTGGAGTTCATCCATGTTGTCTTCTGGTAGCCGTGACAAGAGTATTCTTCAACGGGATATACGCGCTCAGGAAGATTTCGTTAGCAAACTTTCTGGACATAAGTCAGAGGTTTGTGGACTGAAGTGGTCTTATGACAACCGTGAGTTGGCATCAGGCGGGAATGATAATAGACTTTTTGTTTGGAATCAACATTCAACTCAACCCGTGCTGAAATACTGTGAGCATACTGCTGCCGTGAAAGCTATTGCATGGTCCCCCCATCTTCATGGACTTCTTGCATCTGGGGGAGGAACTGCAGACCGATGTATCCGTTTCTGGAATACAACCACTAACTCTCACTTGAGCTGCATGGACACTGGAAGTCAGGTTTGCAATCTTGTGTGGTCCAAAAATGTCAATGAGCTCGTCAGCACGCACGGGTACTCCCAAAATCAGATAATAGTTTGGAGATATCCTACGATGTCCAAGCTGGCAACTCTCACGGGCCATACATATAGAGTTCTTTATCTTGCCATCTCACCTGACGGACAGACAATTGTCACAGGAGCAGGAGATGAAACACTTAGGTTTTGGAATGTGTTTCCATCCCCTAAATCTCAGAATACGGGAAGTGAAATCGGAGCATCATGTCTAGGCAGAACCATCATCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009653 GO:0009825 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010026 GO:0010073 GO:0010074 GO:0010090 GO:0010091 GO:0010492 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0019827 GO:0022402 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032535 GO:0032875 GO:0032877 GO:0032989 GO:0034641 GO:0034645 GO:0040007 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045740 GO:0045787 GO:0045935 GO:0046483 GO:0048468 GO:0048507 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051726 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090066 GO:0090068 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0098727 GO:1901360 GO:1901576 GO:2000105 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04120 ko04914 map04110 map04111 map04120 map04914

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

487

Amino Acids

53.72

Weight (kDa)

9.22

Isoelectric Point (pI)

45.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	172 - 461	8.2e-128	CDC20/Fizzy WD40 domain
WD40_WDHD1_1st	PF24817	184 - 273	2.1e-08	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	190 - 355	4.9e-17	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR19_1st	PF23389	192 - 285	5.4e-12	WDR19 first beta-propeller
Beta-prop_WDR3_1st	PF25173	193 - 307	4.1e-16	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	201 - 285	2.9e-09	THOC3 beta-propeller domain
ANAPC4_WD40	PF12894	212 - 273	9.3e-06	Anaphase-promoting complex subunit 4 WD40 domain
Beta-prop_WDR5	PF25175	220 - 401	1.5e-23	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	220 - 285	6.4e-06	WDR3 second beta-propeller domain
WDR55	PF24796	220 - 466	3e-11	WDR55
WD40_MABP1-WDR62_2nd	PF24782	222 - 462	1.7e-14	MABP1/WDR62 second WD40 domain
Beta-prop_TEP1_2nd	PF25047	224 - 397	1.2e-10	TEP-1 second beta-propeller
WD40_Prp19	PF24814	274 - 462	3.4e-17	Prp19 WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	291 - 383	4.3e-10	CAF1B/HIR1 beta-propeller domain
WD40_WDHD1_1st	PF24817	292 - 360	2.5e-06	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	295 - 407	1.7e-14	WDR3 first beta-propeller domain
WD40	PF00400	296 - 332	4.3e-07	WD domain, G-beta repeat
WD40_Gbeta	PF25391	298 - 467	1.9e-12	G protein beta WD-40 repeat protein
Beta-prop_THOC3	PF25174	303 - 409	7.7e-19	THOC3 beta-propeller domain
Beta-prop_Aladin	PF25460	303 - 463	2.6e-08	Aladin seven-bladed propeller
Beta-prop_EML	PF23409	342 - 464	2.6e-10	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR5	PF25175	344 - 463	1.1e-13	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	345 - 463	1.6e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	369 - 466	2.5e-08	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	393 - 463	3.1e-08	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	412 - 463	2.6e-08	THOC3 beta-propeller domain
WD40	PF00400	426 - 462	1e-07	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11920 AT4G22910
fragaria_vesca	FvH4_5g01220 FvH4_5g01220
malus_domestica	MD00G1131600.v1.1 MD04G1070400.v1.1 MD11G1180200.v1.1 MD13G1123600.v1.1
prunus_persica	Prupe.5G087300_v2.0.a1
pyrus_communis	pycom04g06380 pycom06g06850
rosa_chinensis	RchiOBHm_Chr7g0199871
rosa_laevigata	RLG00000003764
rosa_multiflora	Rmu_sc0002748.1_g000015
rosa_roxburghii	Rroxscaffold_3G00256420
rosa_rugosa	Rorug07G0056700
rosa_samantha	Rh7AG181900 Rh7CG191500
rosa_wichuraiana	Rw7G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	403, 446
AccI	GTMKAC	1 cut(s)	790
AccII	CGCG	5 cut(s)	76, 163, 288, 400, 873
AclWI	GGATC	2 cut(s)	2, 192
AcsI	RAATTY	2 cut(s)	241, 738
AcuI	CTGAAG	1 cut(s)	950
AcyI	GRCGYC	1 cut(s)	104
AfaI	GTAC	1 cut(s)	1232
AfiI	CCNNNNNNNGG	7 cut(s)	88, 342, 345, 487, 742, 955, 1458
AgsI	TTSAA	3 cut(s)	388, 860, 1005
AjiI	CACGTC	1 cut(s)	445
AjnI	CCWGG	3 cut(s)	482, 494, 809
AluBI	AGCT	5 cut(s)	49, 1052, 1155, 1213, 1279
AluI	AGCT	5 cut(s)	49, 1052, 1155, 1213, 1279
Alw21I	GWGCWC	1 cut(s)	1215
Alw26I	GTCTC	3 cut(s)	95, 251, 389
AlwI	GGATC	2 cut(s)	2, 192
AoxI	GGCC	5 cut(s)	108, 301, 781, 807, 1294
ApeKI	GCWGC	8 cut(s)	46, 70, 290, 418, 421, 691, 1040, 1155
ApoI	RAATTY	2 cut(s)	241, 738
ArsI	GACNNNNNNTTYG	4 cut(s)	233, 265, 972, 1004
Asp700I	GAANNNNTTC	1 cut(s)	377
AspLEI	GCGC	4 cut(s)	269, 290, 691, 875
AsuC2I	CCSGG	1 cut(s)	112
AsuHPI	GGTGA	3 cut(s)	442, 484, 1320
AvaII	GGWCC	7 cut(s)	78, 91, 165, 405, 490, 1062, 1194
BaeI	ACNNNNGTAYC	2 cut(s)	1099, 1132
BanII	GRGCYC	1 cut(s)	1215
BbsI	GAAGAC	3 cut(s)	482, 558, 822
Bbv12I	GWGCWC	1 cut(s)	1215
BbvI	GCAGC	8 cut(s)	57, 58, 302, 405, 408, 703, 1027, 1142
BccI	CCATC	6 cut(s)	176, 792, 1077, 1331, 1402, 1460
BceAI	ACGGC	4 cut(s)	142, 409, 825, 1028
BciT130I	CCWGG	3 cut(s)	484, 496, 811
BciVI	GTATCC	1 cut(s)	1127
BcnI	CCSGG	1 cut(s)	112
BcoDI	GTCTC	3 cut(s)	95, 251, 389
BfaI	CTAG	1 cut(s)	1442
BfmI	CTRYAG	1 cut(s)	1104
BfoI	RGCGCY	1 cut(s)	270
BfuI	GTATCC	1 cut(s)	1127
BglI	GCCNNNNNGGC	1 cut(s)	112
Bme1390I	CCNGG	4 cut(s)	112, 484, 496, 811
Bme18I	GGWCC	7 cut(s)	78, 91, 165, 405, 490, 1062, 1194
BmgBI	CACGTC	1 cut(s)	445
BmiI	GGNNCC	4 cut(s)	80, 304, 492, 1064
BmrFI	CCNGG	4 cut(s)	112, 484, 496, 811
BmsI	GCATC	6 cut(s)	508, 736, 758, 968, 1097, 1442
BoxI	GACNNNNGTC	2 cut(s)	910, 1346
BpiI	GAAGAC	3 cut(s)	482, 558, 822
BpmI	CTGGAG	2 cut(s)	247, 832
Bpu10I	CCTNAGC	1 cut(s)	876
BpuEI	CTTGAG	1 cut(s)	1171
BpuMI	CCSGG	1 cut(s)	112
BsaAI	YACGTR	1 cut(s)	794
BsaBI	GATNNNNATC	1 cut(s)	543
BsaHI	GRCGYC	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	3 cut(s)	74, 482, 494
BsaWI	WCCGGW	3 cut(s)	381, 452, 469
BsaXI	ACNNNNNCTCC	4 cut(s)	245, 275, 1217, 1247
Bsc4I	CCNNNNNNNGG	7 cut(s)	88, 342, 345, 487, 742, 955, 1458
Bse118I	RCCGGY	3 cut(s)	106, 314, 523
Bse1I	ACTGG	2 cut(s)	724, 1171
Bse3DI	GCAATG	1 cut(s)	730
Bse8I	GATNNNNATC	1 cut(s)	543
BseBI	CCWGG	3 cut(s)	484, 496, 811
BseDI	CCNNGG	3 cut(s)	74, 482, 494
BseGI	GGATG	4 cut(s)	523, 751, 818, 1394
BseJI	GATNNNNATC	1 cut(s)	543
BseLI	CCNNNNNNNGG	7 cut(s)	88, 342, 345, 487, 742, 955, 1458
BseMI	GCAATG	1 cut(s)	730
BseMII	CTCAG	3 cut(s)	260, 890, 1421
BseNI	ACTGG	2 cut(s)	724, 1171
BseXI	GCAGC	8 cut(s)	57, 58, 302, 405, 408, 703, 1027, 1142
BseYI	CCCAGC	2 cut(s)	191, 684
Bsh1236I	CGCG	5 cut(s)	76, 163, 288, 400, 873
Bsh1285I	CGRYCG	2 cut(s)	155, 343
BshFI	GGCC	5 cut(s)	110, 303, 783, 809, 1296
BsiEI	CGRYCG	2 cut(s)	155, 343
BsiHKAI	GWGCWC	1 cut(s)	1215
BslFI	GGGAC	3 cut(s)	476, 670, 1048
BslI	CCNNNNNNNGG	7 cut(s)	88, 342, 345, 487, 742, 955, 1458
BsmAI	GTCTC	3 cut(s)	95, 251, 389
BsmBI	CGTCTC	2 cut(s)	95, 389
BsmFI	GGGAC	3 cut(s)	476, 670, 1048
BsmI	GAATGC	2 cut(s)	132, 622
BsnI	GGCC	5 cut(s)	110, 303, 783, 809, 1296
Bso31I	GGTCTC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	1215
Bsp143I	GATC	4 cut(s)	7, 152, 197, 340
BspANI	GGCC	5 cut(s)	110, 303, 783, 809, 1296
BspCNI	CTCAG	3 cut(s)	259, 889, 1420
BspFNI	CGCG	5 cut(s)	76, 163, 288, 400, 873
BspLI	GGNNCC	4 cut(s)	80, 304, 492, 1064
BspMAI	CTGCAG	1 cut(s)	1108
BspPI	GGATC	2 cut(s)	2, 192
BspTNI	GGTCTC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	730
BsrFI	RCCGGY	3 cut(s)	106, 314, 523
BsrI	ACTGG	2 cut(s)	724, 1171
BssAI	RCCGGY	3 cut(s)	106, 314, 523
BssECI	CCNNGG	3 cut(s)	74, 482, 494
BssMI	GATC	4 cut(s)	7, 152, 197, 340
BssNI	GRCGYC	1 cut(s)	104
Bst2UI	CCWGG	3 cut(s)	484, 496, 811
Bst4CI	ACNGT	3 cut(s)	602, 950, 1028
Bst6I	CTCTTC	1 cut(s)	302
BstACI	GRCGYC	1 cut(s)	104
BstAPI	GCANNNNNTGC	1 cut(s)	418
BstBAI	YACGTR	1 cut(s)	794
BstC8I	GCNNGC	4 cut(s)	108, 316, 1223, 1281
BstDEI	CTNAG	5 cut(s)	246, 639, 876, 1373, 1407
BstDSI	CCRYGG	1 cut(s)	74
BstEII	GGTNACC	1 cut(s)	448
BstF5I	GGATG	4 cut(s)	523, 751, 818, 1394
BstFNI	CGCG	5 cut(s)	76, 163, 288, 400, 873
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	4 cut(s)	269, 290, 691, 875
BstKTI	GATC	4 cut(s)	10, 155, 200, 343
BstMAI	GTCTC	3 cut(s)	95, 251, 389
BstMBI	GATC	4 cut(s)	7, 152, 197, 340
BstMCI	CGRYCG	2 cut(s)	155, 343
BstNI	CCWGG	3 cut(s)	484, 496, 811
BstPAI	GACNNNNGTC	2 cut(s)	910, 1346
BstPI	GGTNACC	1 cut(s)	448
BstSCI	CCNGG	4 cut(s)	110, 482, 494, 809
BstSFI	CTRYAG	1 cut(s)	1104
BstSNI	TACGTA	1 cut(s)	794
BstUI	CGCG	5 cut(s)	76, 163, 288, 400, 873
BstV1I	GCAGC	8 cut(s)	57, 58, 302, 405, 408, 703, 1027, 1142
BstV2I	GAAGAC	3 cut(s)	482, 558, 822
BstX2I	RGATCY	1 cut(s)	197
BstXI	CCANNNNNNTGG	1 cut(s)	1076
BstYI	RGATCY	1 cut(s)	197
BsuI	GTATCC	1 cut(s)	1127
BsuRI	GGCC	5 cut(s)	110, 303, 783, 809, 1296
BtgI	CCRYGG	1 cut(s)	74
BtrI	CACGTC	1 cut(s)	445
BtsCI	GGATG	4 cut(s)	523, 751, 818, 1394
BtsIMutI	CAGTG	1 cut(s)	1164
Cac8I	GCNNGC	4 cut(s)	108, 316, 1223, 1281
CfoI	GCGC	4 cut(s)	269, 290, 691, 875
Cfr10I	RCCGGY	3 cut(s)	106, 314, 523
Cfr42I	CCGCGG	1 cut(s)	77
CseI	GACGC	3 cut(s)	76, 112, 406
Csp6I	GTAC	1 cut(s)	1231
CviAII	CATG	6 cut(s)	409, 823, 1059, 1076, 1159, 1437
CviQI	GTAC	1 cut(s)	1231
DdeI	CTNAG	5 cut(s)	246, 639, 876, 1373, 1407
DpnI	GATC	4 cut(s)	9, 154, 199, 342
DpnII	GATC	4 cut(s)	7, 152, 197, 340
DrdI	GACNNNNNNGTC	2 cut(s)	403, 446
DseDI	GACNNNNNNGTC	2 cut(s)	403, 446
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Ecl136II	GAGCTC	1 cut(s)	1213
Eco105I	TACGTA	1 cut(s)	794
Eco24I	GRGCYC	1 cut(s)	1215
Eco31I	GGTCTC	1 cut(s)	251
Eco32I	GATATC	1 cut(s)	1262
Eco47I	GGWCC	7 cut(s)	78, 91, 165, 405, 490, 1062, 1194
Eco53kI	GAGCTC	1 cut(s)	1213
Eco57I	CTGAAG	1 cut(s)	950
Eco91I	GGTNACC	1 cut(s)	448
EcoICRI	GAGCTC	1 cut(s)	1213
EcoO109I	RGGNCCY	1 cut(s)	490
EcoO65I	GGTNACC	1 cut(s)	448
EcoRI	GAATTC	1 cut(s)	241
EcoRII	CCWGG	3 cut(s)	482, 494, 809
EcoRV	GATATC	1 cut(s)	1262
EcoT22I	ATGCAT	1 cut(s)	751
EcoT38I	GRGCYC	1 cut(s)	1215
Esp3I	CGTCTC	2 cut(s)	95, 389
FaeI	CATG	6 cut(s)	412, 826, 1062, 1079, 1162, 1440
FaqI	GGGAC	3 cut(s)	476, 670, 1048
FatI	CATG	6 cut(s)	408, 822, 1058, 1075, 1158, 1436
FauI	CCCGC	4 cut(s)	339, 369, 687, 959
FblI	GTMKAC	1 cut(s)	790
FokI	GGATG	4 cut(s)	530, 758, 805, 1381
FriOI	GRGCYC	1 cut(s)	1215
FspBI	CTAG	1 cut(s)	1442
GlaI	GCGC	4 cut(s)	268, 289, 690, 874
GsaI	CCCAGC	2 cut(s)	195, 688
GsuI	CTGGAG	2 cut(s)	247, 832
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	5 cut(s)	110, 303, 783, 809, 1296
HgaI	GACGC	3 cut(s)	76, 112, 406
HhaI	GCGC	4 cut(s)	269, 290, 691, 875
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	6 cut(s)	412, 826, 1062, 1079, 1162, 1440
Hin6I	GCGC	4 cut(s)	267, 288, 689, 873
HinP1I	GCGC	4 cut(s)	267, 288, 689, 873
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	3 cut(s)	322, 550, 994
HphI	GGTGA	3 cut(s)	442, 484, 1320
Hpy166II	GTNNAC	3 cut(s)	139, 791, 926
Hpy188I	TCNGA	7 cut(s)	178, 253, 549, 916, 1245, 1410, 1430
Hpy188III	TCNNGA	4 cut(s)	388, 878, 903, 1126
Hpy8I	GTNNAC	3 cut(s)	139, 791, 926
Hpy99I	CGWCG	4 cut(s)	70, 163, 257, 446
HpyAV	CCTTC	1 cut(s)	481
HpyCH4III	ACNGT	3 cut(s)	602, 950, 1028
HpyCH4IV	ACGT	3 cut(s)	135, 444, 793
HpyCH4V	TGCA	9 cut(s)	412, 521, 532, 749, 1058, 1088, 1106, 1158, 1182
HpyF3I	CTNAG	5 cut(s)	246, 639, 876, 1373, 1407
HpySE526I	ACGT	3 cut(s)	135, 444, 793
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	6 cut(s)	412, 826, 1062, 1079, 1162, 1440
HspAI	GCGC	4 cut(s)	267, 288, 689, 873
KroI	GCCGGC	2 cut(s)	106, 314
KroNI	GCCGGC	2 cut(s)	108, 316
KspI	CCGCGG	1 cut(s)	77
Kzo9I	GATC	4 cut(s)	7, 152, 197, 340
LmnI	GCTCC	3 cut(s)	285, 1355, 1430
Lsp1109I	GCAGC	8 cut(s)	57, 58, 302, 405, 408, 703, 1027, 1142
LweI	GCATC	6 cut(s)	508, 736, 758, 968, 1097, 1442
MaeI	CTAG	1 cut(s)	1442
MaeII	ACGT	3 cut(s)	135, 444, 793
MaeIII	GTNAC	4 cut(s)	448, 634, 842, 1348
MalI	GATC	4 cut(s)	9, 154, 199, 342
MboI	GATC	4 cut(s)	7, 152, 197, 340
MfeI	CAATTG	1 cut(s)	1344
MflI	RGATCY	1 cut(s)	197
MhlI	GDGCHC	1 cut(s)	1215
MluCI	AATT	3 cut(s)	241, 738, 1344
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	8 cut(s)	93, 271, 305, 336, 756, 772, 910, 1091
Mph1103I	ATGCAT	1 cut(s)	751
MreI	CGCCGGCG	1 cut(s)	314
MroNI	GCCGGC	2 cut(s)	106, 314
MroXI	GAANNNNTTC	1 cut(s)	377
MslI	CAYNNNNRTG	1 cut(s)	1074
MspA1I	CMGCKG	2 cut(s)	76, 694
MspR9I	CCNGG	4 cut(s)	112, 484, 496, 811
MunI	CAATTG	1 cut(s)	1344
Mva1269I	GAATGC	2 cut(s)	132, 622
MvaI	CCWGG	3 cut(s)	484, 496, 811
MvnI	CGCG	5 cut(s)	76, 163, 288, 400, 873
NaeI	GCCGGC	2 cut(s)	108, 316
NciI	CCSGG	1 cut(s)	112
NdeII	GATC	4 cut(s)	7, 152, 197, 340
NgoMIV	GCCGGC	2 cut(s)	106, 314
NlaIII	CATG	6 cut(s)	412, 826, 1062, 1079, 1162, 1440
NlaIV	GGNNCC	4 cut(s)	80, 304, 492, 1064
NmuCI	GTSAC	3 cut(s)	448, 842, 1348
NsiI	ATGCAT	1 cut(s)	751
PcsI	WCGNNNNNNNCGW	1 cut(s)	422
PctI	GAATGC	2 cut(s)	132, 622
PdiI	GCCGGC	2 cut(s)	108, 316
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	3 cut(s)	322, 550, 994
PflFI	GACNNNGTC	1 cut(s)	446
Ple19I	CGATCG	2 cut(s)	155, 343
Ppu21I	YACGTR	1 cut(s)	794
PpuMI	RGGWCCY	1 cut(s)	490
PshAI	GACNNNNGTC	2 cut(s)	910, 1346
Psp124BI	GAGCTC	1 cut(s)	1215
Psp5II	RGGWCCY	1 cut(s)	490
Psp6I	CCWGG	3 cut(s)	482, 494, 809
PspEI	GGTNACC	1 cut(s)	448
PspFI	CCCAGC	2 cut(s)	191, 684
PspGI	CCWGG	3 cut(s)	482, 494, 809
PspN4I	GGNNCC	4 cut(s)	80, 304, 492, 1064
PspPPI	RGGWCCY	1 cut(s)	490
PstI	CTGCAG	1 cut(s)	1108
PsuI	RGATCY	1 cut(s)	197
PsyI	GACNNNGTC	1 cut(s)	446
PvuI	CGATCG	2 cut(s)	155, 343
RsaI	GTAC	1 cut(s)	1232
RsaNI	GTAC	1 cut(s)	1231
RseI	CAYNNNNRTG	1 cut(s)	1074
SacI	GAGCTC	1 cut(s)	1215
SacII	CCGCGG	1 cut(s)	77
Sau3AI	GATC	4 cut(s)	7, 152, 197, 340
ScrFI	CCNGG	4 cut(s)	112, 484, 496, 811
SduI	GDGCHC	1 cut(s)	1215
SfaNI	GCATC	6 cut(s)	508, 736, 758, 968, 1097, 1442
SfcI	CTRYAG	1 cut(s)	1104
Sfr303I	CCGCGG	1 cut(s)	77
SgrAI	CRCCGGYG	1 cut(s)	314
SgrBI	CCGCGG	1 cut(s)	77
SinI	GGWCC	7 cut(s)	78, 91, 165, 405, 490, 1062, 1194
SmiMI	CAYNNNNRTG	1 cut(s)	1074
SmlI	CTYRAG	1 cut(s)	1150
SmoI	CTYRAG	1 cut(s)	1150
SnaBI	TACGTA	1 cut(s)	794
Sse9I	AATT	3 cut(s)	241, 738, 1344
SspMI	CTAG	1 cut(s)	1442
SstI	GAGCTC	1 cut(s)	1215
StyD4I	CCNGG	4 cut(s)	110, 482, 494, 809
TaaI	ACNGT	3 cut(s)	602, 950, 1028
TaiI	ACGT	3 cut(s)	138, 447, 796
TaqI	TCGA	2 cut(s)	120, 222
TaqII	GACCGA	1 cut(s)	1125
TasI	AATT	3 cut(s)	241, 738, 1344
TauI	GCSGC	4 cut(s)	61, 64, 76, 403
TfiI	GAWTC	3 cut(s)	322, 550, 994
TscAI	CASTG	1 cut(s)	1171
TseFI	GTSAC	3 cut(s)	448, 842, 1348
TseI	GCWGC	8 cut(s)	46, 70, 290, 418, 421, 691, 1040, 1155
Tsp45I	GTSAC	3 cut(s)	448, 842, 1348
TspDTI	ATGAA	6 cut(s)	175, 371, 449, 807, 1064, 1380
TspGWI	ACGGA	2 cut(s)	1109, 1350
TspRI	CASTG	1 cut(s)	1171
Tth111I	GACNNNGTC	1 cut(s)	446
VpaK11BI	GGWCC	7 cut(s)	78, 91, 165, 405, 490, 1062, 1194
XapI	RAATTY	2 cut(s)	241, 738
XmiI	GTMKAC	1 cut(s)	790
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	1 cut(s)	1442
Zsp2I	ATGCAT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.