Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0011780

Physical Location & Seq

Genomic Coordinates Forward (+)

4031445 .. 4031672

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0056700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGAAACGAAGTGTCACCAGAGGTTGTTCTGGTCGACAACATAGTGGGAAAGCTGGTTTTATTGCTTTATGGCTTTGTATGAGCTTTGACTTTCATATATGTCACTTTTGTAAAGCAAATTGTGTTGCCCAGATATCTGGTATGTCAACCCTTGCTAGTTGGTGCATGTTTGAATACATAGGATTAGTGAGAGCTCTTGTTAAACTTCCTGAGTTCTCATGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009653 GO:0009825 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010026 GO:0010073 GO:0010074 GO:0010090 GO:0010091 GO:0010492 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0019827 GO:0022402 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032535 GO:0032875 GO:0032877 GO:0032989 GO:0034641 GO:0034645 GO:0040007 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045740 GO:0045787 GO:0045935 GO:0046483 GO:0048468 GO:0048507 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051726 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090066 GO:0090068 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0098727 GO:1901360 GO:1901576 GO:2000105 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04120 ko04914 map04110 map04111 map04120 map04914

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

75

Amino Acids

8.43

Weight (kDa)

8.99

Isoelectric Point (pI)

60.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11920 AT4G22910
fragaria_vesca	FvH4_5g01220 FvH4_5g01220
malus_domestica	MD00G1131600.v1.1 MD04G1070400.v1.1 MD11G1180200.v1.1 MD13G1123600.v1.1
prunus_persica	Prupe.5G087300_v2.0.a1
pyrus_communis	pycom04g06380 pycom06g06850
rosa_chinensis	RchiOBHm_Chr7g0199871
rosa_laevigata	RLG00000003764
rosa_multiflora	Rmu_sc0002748.1_g000015
rosa_roxburghii	Rroxscaffold_3G00256420
rosa_rugosa	Rorug07G0056700
rosa_samantha	Rh7AG181900 Rh7CG191500
rosa_wichuraiana	Rw7G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	34
AgsI	TTSAA	1 cut(s)	173
AluBI	AGCT	3 cut(s)	53, 84, 194
AluI	AGCT	3 cut(s)	53, 84, 194
Alw21I	GWGCWC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	196
Bbv12I	GWGCWC	1 cut(s)	196
BfaI	CTAG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	196
BspCNI	CTCAG	1 cut(s)	202
BstDEI	CTNAG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	169
BstXI	CCANNNNNNTGG	1 cut(s)	137
CviAII	CATG	2 cut(s)	166, 219
CviJI	RGCY	4 cut(s)	53, 73, 84, 194
CviKI_1	RGCY	4 cut(s)	53, 73, 84, 194
DdeI	CTNAG	1 cut(s)	210
Ecl136II	GAGCTC	1 cut(s)	194
Eco24I	GRGCYC	1 cut(s)	196
Eco32I	GATATC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	194
EcoICRI	GAGCTC	1 cut(s)	194
EcoRV	GATATC	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	196
FaeI	CATG	2 cut(s)	169, 222
FatI	CATG	2 cut(s)	165, 218
FblI	GTMKAC	1 cut(s)	34
FriOI	GRGCYC	1 cut(s)	196
FspBI	CTAG	1 cut(s)	156
Hin1II	CATG	2 cut(s)	169, 222
HincII	GTYRAC	2 cut(s)	35, 147
HindII	GTYRAC	2 cut(s)	35, 147
HphI	GGTGA	1 cut(s)	7
Hpy166II	GTNNAC	2 cut(s)	35, 147
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	2 cut(s)	35, 147
HpyCH4V	TGCA	1 cut(s)	165
HpyF3I	CTNAG	1 cut(s)	210
Hsp92II	CATG	2 cut(s)	169, 222
LpnPI	CCDG	6 cut(s)	15, 31, 39, 123, 143, 222
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	3 cut(s)	13, 101, 221
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	1 cut(s)	118
MnlI	CCTC	1 cut(s)	14
MseI	TTAA	1 cut(s)	201
NlaIII	CATG	2 cut(s)	169, 222
NmuCI	GTSAC	2 cut(s)	13, 101
NspI	RCATGY	1 cut(s)	169
Psp124BI	GAGCTC	1 cut(s)	196
SacI	GAGCTC	1 cut(s)	196
SalI	GTCGAC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	4 cut(s)	25, 55, 86, 196
Sse9I	AATT	1 cut(s)	118
SspMI	CTAG	1 cut(s)	156
SstI	GAGCTC	1 cut(s)	196
TaqI	TCGA	1 cut(s)	34
TasI	AATT	1 cut(s)	118
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TseFI	GTSAC	2 cut(s)	13, 101
Tsp45I	GTSAC	2 cut(s)	13, 101
TspDTI	ATGAA	2 cut(s)	17, 83
XceI	RCATGY	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	34
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.