MD11G1227400.v1.1

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011026
Physical Location & Seq
Reverse (-)
33125621 .. 33126618
998 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1227400.v1.1.491

Sequence Viewer

Length: 318 bp
ATGAAGCAGGTTATCGCAAAAGATTTCTATGAAAAGATTCCAAAGTTGAGAACCATAGAAGTCAGGGATATGGAAAGCTTAAGTACTATCTGTTCAAGGGGAGCGGAACTGTCAGCTCTAGAGAGGATTGTGGTGAGCAACTGCCCCAGGGTGGTGAAGCTTCCCTTCACAGCCCGTGATGCATTGACTATTAAAGAGATCAGAGGAGATTTAAACTGGTGGACAGGTCTTAAATGGCAAAATCGTGAAGATAAGATCAGTCTTCAGCAACGATTCCAAGCGTGCGCAGACACCGCAGTGCCGCCGATGGAGGATTAA

Protein Analysis

106

Amino Acids

12.11

Weight (kDa)

8.52

Isoelectric Point (pI)

29.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011026)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27190 AT4G27220 AT4G27220
fragaria_vesca FvH4_3g21750
malus_domestica MD11G1227400.v1.1 MD11G1227500.v1.1
prunus_persica Prupe.4G201800_v2.0.a1
pyrus_communis pycom11g20010
rosa_chinensis RchiOBHm_Chr5g0037231
rosa_multiflora Rmu_sc0005002.1_g000030
rosa_roxburghii Rroxscaffold_1G00043740
rosa_rugosa Rorug05G0163900 Rorug05G0163900
rosa_samantha Rh5AG253500 Rh5BG255500 Rh5CG288200 Rh5CG288300 Rh5DG263900
rosa_wichuraiana Rw5G023420 Rw5G023450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 286
AccBSI CCGCTC 1 cut(s) 104
AciI CCGC 3 cut(s) 104, 294, 302
AcuI CTGAAG 1 cut(s) 248
AfaI GTAC 1 cut(s) 85
AfiI CCNNNNNNNGG 1 cut(s) 151
AflII CTTAAG 1 cut(s) 79
AgsI TTSAA 1 cut(s) 96
AjnI CCWGG 1 cut(s) 146
AleI CACNNNNGTG 1 cut(s) 296
AluBI AGCT 3 cut(s) 78, 116, 160
AluI AGCT 3 cut(s) 78, 116, 160
Asp700I GAANNNNTTC 1 cut(s) 36
AspLEI GCGC 1 cut(s) 287
AsuHPI GGTGA 2 cut(s) 145, 166
BbsI GAAGAC 1 cut(s) 254
BccI CCATC 1 cut(s) 301
BciT130I CCWGG 1 cut(s) 148
BfaI CTAG 1 cut(s) 119
BfrI CTTAAG 1 cut(s) 79
BisI GCNGC 1 cut(s) 302
BlsI GCNGC 1 cut(s) 303
BmcAI AGTACT 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 148
BmrFI CCNGG 1 cut(s) 148
BmsI GCATC 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 254
BsaJI CCNNGG 2 cut(s) 146, 147
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 221
BseBI CCWGG 1 cut(s) 148
BseDI CCNNGG 2 cut(s) 146, 147
BseLI CCNNNNNNNGG 1 cut(s) 151
BseNI ACTGG 1 cut(s) 221
BseRI GAGGAG 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 151
Bsp143I GATC 2 cut(s) 198, 255
BspACI CCGC 3 cut(s) 104, 294, 302
BspTI CTTAAG 1 cut(s) 79
BsrBI CCGCTC 1 cut(s) 104
BsrI ACTGG 1 cut(s) 221
BssECI CCNNGG 2 cut(s) 146, 147
BssMI GATC 2 cut(s) 198, 255
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 111
BstAFI CTTAAG 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 283
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 2 cut(s) 201, 258
BstMBI GATC 2 cut(s) 198, 255
BstMWI GCNNNNNNNGC 2 cut(s) 179, 293
BstNI CCWGG 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 146
BstV2I GAAGAC 1 cut(s) 254
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 283
CfoI GCGC 1 cut(s) 287
Csp6I GTAC 1 cut(s) 84
CviJI RGCY 4 cut(s) 78, 116, 160, 173
CviKI_1 RGCY 4 cut(s) 78, 116, 160, 173
CviQI GTAC 1 cut(s) 84
DpnI GATC 2 cut(s) 200, 257
DpnII GATC 2 cut(s) 198, 255
DraI TTTAAA 1 cut(s) 213
Eco57I CTGAAG 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 146
EcoT22I ATGCAT 1 cut(s) 184
FaiI YATR 3 cut(s) 30, 56, 71
FalI AAGNNNNNCTT 2 cut(s) 149, 181
Fnu4HI GCNGC 1 cut(s) 302
Fsp4HI GCNGC 1 cut(s) 302
FspBI CTAG 1 cut(s) 119
FspI TGCGCA 1 cut(s) 286
GlaI GCGC 1 cut(s) 286
GluI GCNGC 1 cut(s) 302
HhaI GCGC 1 cut(s) 287
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HindIII AAGCTT 2 cut(s) 76, 158
HinfI GANTC 2 cut(s) 37, 273
HphI GGTGA 2 cut(s) 145, 166
Hpy166II GTNNAC 1 cut(s) 222
Hpy188I TCNGA 1 cut(s) 203
Hpy188III TCNNGA 2 cut(s) 119, 245
Hpy8I GTNNAC 1 cut(s) 222
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 293
HspAI GCGC 1 cut(s) 285
Kzo9I GATC 2 cut(s) 198, 255
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 5 cut(s) 49, 133, 160, 202, 210
LweI GCATC 1 cut(s) 169
MaeI CTAG 1 cut(s) 119
MalI GATC 2 cut(s) 200, 257
MbiI CCGCTC 1 cut(s) 104
MboI GATC 2 cut(s) 198, 255
MboII GAAGA 2 cut(s) 254, 260
MnlI CCTC 3 cut(s) 117, 197, 304
Mph1103I ATGCAT 1 cut(s) 184
MroXI GAANNNNTTC 1 cut(s) 36
MseI TTAA 5 cut(s) 80, 192, 212, 231, 316
MslI CAYNNNNRTG 1 cut(s) 296
MspCI CTTAAG 1 cut(s) 79
MspR9I CCNGG 1 cut(s) 148
MvaI CCWGG 1 cut(s) 148
MwoI GCNNNNNNNGC 2 cut(s) 179, 293
NdeII GATC 2 cut(s) 198, 255
NsbI TGCGCA 1 cut(s) 286
NsiI ATGCAT 1 cut(s) 184
OliI CACNNNNGTG 1 cut(s) 296
PasI CCCWGGG 1 cut(s) 147
PdmI GAANNNNTTC 1 cut(s) 36
PfeI GAWTC 2 cut(s) 37, 273
PkrI GCNGC 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
PsrI GAACNNNNNNTAC 2 cut(s) 76, 108
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
RseI CAYNNNNRTG 1 cut(s) 296
SaqAI TTAA 5 cut(s) 80, 192, 212, 231, 316
SatI GCNGC 1 cut(s) 302
Sau3AI GATC 2 cut(s) 198, 255
ScaI AGTACT 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 148
SetI ASST 5 cut(s) 12, 80, 118, 162, 229
SfaNI GCATC 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
SsiI CCGC 3 cut(s) 104, 294, 302
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 146
TaaI ACNGT 1 cut(s) 111
TatI WGTACW 1 cut(s) 83
TauI GCSGC 1 cut(s) 304
TfiI GAWTC 2 cut(s) 37, 273
Tru1I TTAA 5 cut(s) 80, 192, 212, 231, 316
Tru9I TTAA 5 cut(s) 80, 192, 212, 231, 316
TscAI CASTG 1 cut(s) 303
TspDTI ATGAA 2 cut(s) 17, 45
TspRI CASTG 1 cut(s) 303
Vha464I CTTAAG 1 cut(s) 79
XbaI TCTAGA 1 cut(s) 118
XmnI GAANNNNTTC 1 cut(s) 36
XspI CTAG 1 cut(s) 119
ZrmI AGTACT 1 cut(s) 85
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.