Rh5CG288200

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0011026
Physical Location & Seq
Reverse (-)
31565957 .. 31567239
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG288200.1

Sequence Viewer

Length: 1092 bp
ATGGGAACATTAACTCATTTGAGAGATCTAAACTTGTCACGCACAAACCACTTAGAAAGTATCATAGCTGGAAGCATCTCAGGATTATACAGTCTTGAGGCCTTGGACATGTCTTCCAGTGCTTATAAGTGGGATTTGGAACGTAACGTAGAAGGAGCACCATTTGATGAAATTCTATCCTTACAGGGACTTTCAGTTCTTCACATAAGGCTAGACACAGTTAATTGTGTTGCTTTAGACTCGGATGGCTCTTGGTTTGGAAGATTGAAAGAGTTTTCTATTTGGATTGGTCCAAGGAGCTGCGATTCAAGCTATTTACCAACTCAGCATGATGAGAAAAGGGTCATACTTAGAGGGGTTGACCTCTTGCAAAGTGGCCTTGAGGGGTTATTGTACACTGCAAGTTCCCTGGATCTGGTCACATGTGGAGGTATAAGTAGTTTATCTGATCTAATTTCCAGCAGGAAACTGGGTGGCCTGCCAAACTTGAAGTTTCTCACCATCTCAAATTGTGACTGCATTACTAGTTTGTTAAATGGCGAAGAAACTCTTGGGAGCACATTGTCAAATCTGGAGCATTTGACCCTCAATTGCCTAAACAACTTGGAAACCATAGTGGACAGGATAGTCCCTAGAGGATGCCTTGGCAAATTAAAGATGATTGAAGTGATGGGATGCCGAAGACTAAAGACTCTCATATCCTTCACTTTACTTCGACGGGTTCAAAATGTTGAAGAAATCAAGGTGAGTGATTGCAGAAGGATGAAGAAAATTATTGTAAACATCAATTTGTGCGAAACTCTTCCAAAGCTGAAATACATAGAACTAAGGAATATGGACAGCTTAACAGCTATTTGTTCAAGGGCCGCAAAGTGGTCTGCTCTGGAAAGGATTGAAGTGAGCAATTGCCCCAAGCTAGAGAAGCTTCCACTCAGAGCCCAGAATGCAGCAAATCTTAAAGAAATTAGAGGGGACTTGAGTTGGTGGAATGGTCTTAGATGGGAAAATGATGGAGATAAGATCAGTCTTGAGCAACGATTCCAAGCGTGTGCAGACTCCACACAGCTGTTAAGAGAGGATACAGAGGCTTGA

Protein Analysis

363

Amino Acids

40.59

Weight (kDa)

6.05

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 135 - 253 6e-13 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 211 - 309 1.3e-11 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011026)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27190 AT4G27220 AT4G27220
fragaria_vesca FvH4_3g21750
malus_domestica MD11G1227400.v1.1 MD11G1227500.v1.1
prunus_persica Prupe.4G201800_v2.0.a1
pyrus_communis pycom11g20010
rosa_chinensis RchiOBHm_Chr5g0037231
rosa_multiflora Rmu_sc0005002.1_g000030
rosa_roxburghii Rroxscaffold_1G00043740
rosa_rugosa Rorug05G0163900 Rorug05G0163900
rosa_samantha Rh5AG253500 Rh5BG255500 Rh5CG288200 Rh5CG288300 Rh5DG263900
rosa_wichuraiana Rw5G023420 Rw5G023450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 126
AasI GACNNNNNNGTC 1 cut(s) 626
AciI CCGC 1 cut(s) 867
AclWI GGATC 1 cut(s) 420
AcsI RAATTY 1 cut(s) 171
AfaI GTAC 1 cut(s) 395
AfiI CCNNNNNNNGG 2 cut(s) 415, 873
AflIII ACRYGT 2 cut(s) 108, 422
AgsI TTSAA 8 cut(s) 268, 309, 490, 665, 725, 734, 861, 896
AhlI ACTAGT 1 cut(s) 524
AjnI CCWGG 1 cut(s) 408
AjuI GAANNNNNNNTTGG 2 cut(s) 534, 566
AloI GAACNNNNNNTCC 2 cut(s) 180, 212
AluBI AGCT 9 cut(s) 68, 300, 312, 811, 843, 851, 916, 925, 1066
AluI AGCT 9 cut(s) 68, 300, 312, 811, 843, 851, 916, 925, 1066
Alw21I GWGCWC 2 cut(s) 160, 560
AlwI GGATC 1 cut(s) 420
AoxI GGCC 4 cut(s) 99, 376, 475, 864
ApeKI GCWGC 2 cut(s) 300, 947
ApoI RAATTY 1 cut(s) 171
Asp700I GAANNNNTTC 1 cut(s) 801
AspS9I GGNCC 2 cut(s) 290, 864
AsuHPI GGTGA 2 cut(s) 490, 757
AvaII GGWCC 1 cut(s) 290
BanII GRGCYC 1 cut(s) 940
BbsI GAAGAC 2 cut(s) 105, 688
Bbv12I GWGCWC 2 cut(s) 160, 560
BbvI GCAGC 2 cut(s) 287, 959
BccI CCATC 5 cut(s) 239, 509, 664, 993, 1004
BciT130I CCWGG 1 cut(s) 410
BciVI GTATCC 1 cut(s) 1072
BcuI ACTAGT 1 cut(s) 524
BfaI CTAG 4 cut(s) 212, 525, 633, 917
BfuI GTATCC 1 cut(s) 1072
BglII AGATCT 1 cut(s) 25
BisI GCNGC 3 cut(s) 301, 867, 948
BlsI GCNGC 3 cut(s) 302, 868, 949
Bme1390I CCNGG 1 cut(s) 410
Bme18I GGWCC 1 cut(s) 290
BmgT120I GGNCC 2 cut(s) 290, 864
BmrFI CCNGG 1 cut(s) 410
BmrI ACTGGG 1 cut(s) 479
BmsI GCATC 3 cut(s) 84, 629, 665
BmuI ACTGGG 1 cut(s) 479
BpiI GAAGAC 2 cut(s) 105, 688
BpmI CTGGAG 1 cut(s) 593
BpuEI CTTGAG 4 cut(s) 116, 401, 997, 1049
BsaJI CCNNGG 4 cut(s) 102, 293, 408, 643
Bsc4I CCNNNNNNNGG 2 cut(s) 415, 873
Bse1I ACTGG 2 cut(s) 117, 474
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 4 cut(s) 102, 293, 408, 643
BseGI GGATG 4 cut(s) 250, 644, 680, 768
BseLI CCNNNNNNNGG 2 cut(s) 415, 873
BseMII CTCAG 3 cut(s) 93, 338, 946
BseNI ACTGG 2 cut(s) 117, 474
BseXI GCAGC 2 cut(s) 287, 959
BsgI GTGCAG 1 cut(s) 1071
BshFI GGCC 4 cut(s) 101, 378, 477, 866
BsiHKAI GWGCWC 2 cut(s) 160, 560
BslFI GGGAC 3 cut(s) 201, 614, 986
BslI CCNNNNNNNGG 2 cut(s) 415, 873
BsmFI GGGAC 3 cut(s) 201, 614, 986
BsmI GAATGC 1 cut(s) 949
BsnI GGCC 4 cut(s) 101, 378, 477, 866
Bsp1286I GDGCHC 3 cut(s) 160, 560, 940
Bsp1407I TGTACA 1 cut(s) 393
Bsp143I GATC 4 cut(s) 25, 412, 448, 1020
BspACI CCGC 1 cut(s) 867
BspANI GGCC 4 cut(s) 101, 378, 477, 866
BspCNI CTCAG 3 cut(s) 92, 337, 945
BspPI GGATC 1 cut(s) 420
BsrGI TGTACA 1 cut(s) 393
BsrI ACTGG 2 cut(s) 117, 474
BssECI CCNNGG 4 cut(s) 102, 293, 408, 643
BssMI GATC 4 cut(s) 25, 412, 448, 1020
BssT1I CCWWGG 3 cut(s) 102, 293, 643
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 2 cut(s) 92, 220
Bst6I CTCTTC 1 cut(s) 807
BstAUI TGTACA 1 cut(s) 393
BstC8I GCNNGC 1 cut(s) 479
BstDEI CTNAG 7 cut(s) 52, 79, 324, 350, 827, 932, 995
BstF5I GGATG 4 cut(s) 250, 644, 680, 768
BstKTI GATC 4 cut(s) 28, 415, 451, 1023
BstMBI GATC 4 cut(s) 25, 412, 448, 1020
BstMWI GCNNNNNNNGC 3 cut(s) 309, 922, 944
BstNI CCWGG 1 cut(s) 410
BstNSI RCATGY 2 cut(s) 112, 426
BstSCI CCNGG 1 cut(s) 408
BstV1I GCAGC 2 cut(s) 287, 959
BstV2I GAAGAC 2 cut(s) 105, 688
BstX2I RGATCY 2 cut(s) 25, 412
BstYI RGATCY 2 cut(s) 25, 412
BsuI GTATCC 1 cut(s) 1072
BsuRI GGCC 4 cut(s) 101, 378, 477, 866
BtsCI GGATG 4 cut(s) 250, 644, 680, 768
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 2 cut(s) 124, 396
Cac8I GCNNGC 1 cut(s) 479
Cfr13I GGNCC 2 cut(s) 290, 864
Csp6I GTAC 1 cut(s) 394
CviAII CATG 3 cut(s) 109, 329, 423
CviQI GTAC 1 cut(s) 394
DdeI CTNAG 7 cut(s) 52, 79, 324, 350, 827, 932, 995
DpnI GATC 4 cut(s) 27, 414, 450, 1022
DpnII GATC 4 cut(s) 25, 412, 448, 1020
DrdI GACNNNNNNGTC 1 cut(s) 626
DseDI GACNNNNNNGTC 1 cut(s) 626
Eam1104I CTCTTC 1 cut(s) 807
EarI CTCTTC 1 cut(s) 807
Eco130I CCWWGG 3 cut(s) 102, 293, 643
Eco147I AGGCCT 1 cut(s) 101
Eco24I GRGCYC 1 cut(s) 940
Eco47I GGWCC 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 408
EcoT14I CCWWGG 3 cut(s) 102, 293, 643
EcoT38I GRGCYC 1 cut(s) 940
ErhI CCWWGG 3 cut(s) 102, 293, 643
FaeI CATG 3 cut(s) 112, 332, 426
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FaqI GGGAC 3 cut(s) 201, 614, 986
FatI CATG 3 cut(s) 108, 328, 422
Fnu4HI GCNGC 3 cut(s) 301, 867, 948
FokI GGATG 4 cut(s) 257, 651, 687, 775
FriOI GRGCYC 1 cut(s) 940
Fsp4HI GCNGC 3 cut(s) 301, 867, 948
FspBI CTAG 4 cut(s) 212, 525, 633, 917
GluI GCNGC 3 cut(s) 301, 867, 948
GsuI CTGGAG 1 cut(s) 593
HaeIII GGCC 4 cut(s) 101, 378, 477, 866
Hin1II CATG 3 cut(s) 112, 332, 426
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HindIII AAGCTT 1 cut(s) 923
HinfI GANTC 5 cut(s) 239, 305, 691, 1038, 1055
HphI GGTGA 2 cut(s) 490, 757
Hpy166II GTNNAC 4 cut(s) 361, 396, 619, 781
Hpy188I TCNGA 3 cut(s) 244, 448, 935
Hpy188III TCNNGA 5 cut(s) 81, 95, 572, 884, 1028
Hpy8I GTNNAC 4 cut(s) 361, 396, 619, 781
Hpy99I CGWCG 1 cut(s) 720
HpyAV CCTTC 3 cut(s) 146, 712, 753
HpyCH4III ACNGT 2 cut(s) 92, 220
HpyCH4IV ACGT 2 cut(s) 142, 147
HpyCH4V TGCA 6 cut(s) 370, 401, 519, 756, 947, 1052
HpyF10VI GCNNNNNNNGC 3 cut(s) 309, 922, 944
HpyF3I CTNAG 7 cut(s) 52, 79, 324, 350, 827, 932, 995
HpySE526I ACGT 2 cut(s) 142, 147
Hsp92II CATG 3 cut(s) 112, 332, 426
Kzo9I GATC 4 cut(s) 25, 412, 448, 1020
LmnI GCTCC 4 cut(s) 155, 297, 555, 574
Lsp1109I GCAGC 2 cut(s) 287, 959
LweI GCATC 3 cut(s) 84, 629, 665
MaeI CTAG 4 cut(s) 212, 525, 633, 917
MaeII ACGT 2 cut(s) 142, 147
MaeIII GTNAC 4 cut(s) 36, 143, 418, 512
MalI GATC 4 cut(s) 27, 414, 450, 1022
MboI GATC 4 cut(s) 25, 412, 448, 1020
MboII GAAGA 8 cut(s) 105, 191, 273, 554, 693, 746, 778, 794
MfeI CAATTG 2 cut(s) 589, 904
MflI RGATCY 2 cut(s) 25, 412
MhlI GDGCHC 3 cut(s) 160, 560, 940
MlyI GAGTC 3 cut(s) 233, 685, 1049
MroXI GAANNNNTTC 1 cut(s) 801
MseI TTAA 7 cut(s) 11, 222, 533, 653, 845, 957, 1070
MspA1I CMGCKG 1 cut(s) 1066
MspR9I CCNGG 1 cut(s) 410
MunI CAATTG 2 cut(s) 589, 904
Mva1269I GAATGC 1 cut(s) 949
MvaI CCWGG 1 cut(s) 410
MwoI GCNNNNNNNGC 3 cut(s) 309, 922, 944
NdeII GATC 4 cut(s) 25, 412, 448, 1020
NlaIII CATG 3 cut(s) 112, 332, 426
NmuCI GTSAC 3 cut(s) 36, 418, 512
NspI RCATGY 2 cut(s) 112, 426
PceI AGGCCT 1 cut(s) 101
PciI ACATGT 2 cut(s) 108, 422
PctI GAATGC 1 cut(s) 949
PdmI GAANNNNTTC 1 cut(s) 801
PfeI GAWTC 2 cut(s) 305, 1038
PkrI GCNGC 3 cut(s) 302, 868, 949
PleI GAGTC 3 cut(s) 233, 685, 1049
PpsI GAGTC 3 cut(s) 233, 685, 1049
PscI ACATGT 2 cut(s) 108, 422
PsiI TTATAA 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 408
PspGI CCWGG 1 cut(s) 408
PspPI GGNCC 2 cut(s) 290, 864
PsuI RGATCY 2 cut(s) 25, 412
PvuII CAGCTG 1 cut(s) 1066
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
SaqAI TTAA 7 cut(s) 11, 222, 533, 653, 845, 957, 1070
SatI GCNGC 3 cut(s) 301, 867, 948
Sau3AI GATC 4 cut(s) 25, 412, 448, 1020
Sau96I GGNCC 2 cut(s) 290, 864
SchI GAGTC 3 cut(s) 233, 685, 1049
ScrFI CCNGG 1 cut(s) 410
SduI GDGCHC 3 cut(s) 160, 560, 940
SfaNI GCATC 3 cut(s) 84, 629, 665
SinI GGWCC 1 cut(s) 290
SmlI CTYRAG 4 cut(s) 95, 380, 976, 1028
SmoI CTYRAG 4 cut(s) 95, 380, 976, 1028
SpeI ACTAGT 1 cut(s) 524
SseBI AGGCCT 1 cut(s) 101
SsiI CCGC 1 cut(s) 867
SspMI CTAG 4 cut(s) 212, 525, 633, 917
StuI AGGCCT 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 408
StyI CCWWGG 3 cut(s) 102, 293, 643
TaaI ACNGT 2 cut(s) 92, 220
TaiI ACGT 2 cut(s) 145, 150
TaqI TCGA 1 cut(s) 715
TatI WGTACW 1 cut(s) 393
TauI GCSGC 1 cut(s) 869
TfiI GAWTC 2 cut(s) 305, 1038
Tru1I TTAA 7 cut(s) 11, 222, 533, 653, 845, 957, 1070
Tru9I TTAA 7 cut(s) 11, 222, 533, 653, 845, 957, 1070
TscAI CASTG 2 cut(s) 124, 403
TseFI GTSAC 3 cut(s) 36, 418, 512
TseI GCWGC 2 cut(s) 300, 947
Tsp45I GTSAC 3 cut(s) 36, 418, 512
TspDTI ATGAA 2 cut(s) 183, 779
TspRI CASTG 2 cut(s) 124, 403
VpaK11BI GGWCC 1 cut(s) 290
XapI RAATTY 1 cut(s) 171
XceI RCATGY 2 cut(s) 112, 426
XcmI CCANNNNNNNNNTGG 1 cut(s) 466
XmnI GAANNNNTTC 1 cut(s) 801
XspI CTAG 4 cut(s) 212, 525, 633, 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.