Rorug05G0163900

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006822
Physical Location & Seq
Forward (+)
15174394 .. 15177022
2629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0163900.1

Sequence Viewer

Length: 711 bp
ATGAAGCAGCAATCCAAGGACCCATTCGAAGCCGCGTTCGAGGAGCAAGACGACTCGCCGCCCGATTCTCCGGCCGCCGTCGACGCCATACGCGCCGCCCTCGACGAAGACTATGACGAGGGTCTCCCCCCTGAAGACCTACCTTCCTCATCCGCACCATCAACCGCCGCAGCAGCAGCAACCACCACCACAACCACCGTAGCCACTGTAACTCCCGCAACCAAAACCCTAACTAAGAAAAGCTCAGCAAAGCCAACTCCTGCCTCCTCGGCTCGGGCCACGAAGCAGAGCCAGCAGAACAAGGAGGAGGATGATGATGAAGACGAAGACAACGTCGATGTGGAGCTCGGGAAGTATCCGGCGACCGGCGACCCTGTGAAAATGGCGAAGATGCAGGCCATTTTATCACGATTCTCGGAGGAGCAGATGAGTAGATATGAGTCTTTTCGGAGAGCTGGGTTTCAGAAATCCAACATGAAAAGGTTGCTAGCAAGCATCAGTGGAACCCCGAAAATATCGGTGCCAATGACTATTGTAGTTTCAGGGATAGCAAAGATGTTTGTTGGTGAACTTGTTGAAACAGCCAGAATGGTTATGTCAGAGAGGAGAGAATCTGGGCCAATTCGACCATGCCACATTAGAGAATCCTATCGAAGATTAAAGCTGGAAGGCAAAGTCCCCAAGAGATCAGTCTCAAGGCTCTTCCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000785 GO:0001952 GO:0001953 GO:0003674 GO:0003682 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0006355 GO:0006357 GO:0006810 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007030 GO:0007162 GO:0007275 GO:0008047 GO:0008092 GO:0008134 GO:0008150 GO:0009605 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010256 GO:0010468 GO:0010556 GO:0010557 GO:0010594 GO:0010595 GO:0010604 GO:0010628 GO:0010632 GO:0010634 GO:0010638 GO:0010698 GO:0010810 GO:0010812 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0019219 GO:0019222 GO:0019899 GO:0030155 GO:0030234 GO:0030334 GO:0030335 GO:0031023 GO:0031252 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031344 GO:0031346 GO:0031667 GO:0031974 GO:0031981 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032878 GO:0032879 GO:0032880 GO:0032956 GO:0032970 GO:0033043 GO:0033157 GO:0034260 GO:0035035 GO:0035148 GO:0035239 GO:0035257 GO:0035295 GO:0035327 GO:0040012 GO:0040017 GO:0042221 GO:0042393 GO:0042594 GO:0043085 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043547 GO:0043627 GO:0044087 GO:0044089 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045111 GO:0045893 GO:0045935 GO:0045944 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048646 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051270 GO:0051272 GO:0051336 GO:0051345 GO:0051346 GO:0051427 GO:0051489 GO:0051491 GO:0051493 GO:0051495 GO:0051716 GO:0051893 GO:0051895 GO:0060255 GO:0060341 GO:0060491 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070887 GO:0071391 GO:0071840 GO:0080090 GO:0090087 GO:0090109 GO:0090316 GO:0090630 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120032 GO:0120034 GO:0120035 GO:1901888 GO:1901889 GO:1902680 GO:1903391 GO:1903392 GO:1903506 GO:1903508 GO:1903827 GO:1903829 GO:1904951 GO:2000112 GO:2000114 GO:2000145 GO:2000147 GO:2000249 GO:2000251 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCAS3 WD40

Protein Analysis

236

Amino Acids

25.85

Weight (kDa)

6.05

Isoelectric Point (pI)

75.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAFII28 PF04719 134 - 219 2.8e-32 hTAFII28-like protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 520
AccI GTMKAC 1 cut(s) 81
AccII CGCG 2 cut(s) 35, 93
AciI CCGC 8 cut(s) 33, 59, 75, 96, 153, 165, 168, 216
AcoI YGGCCR 1 cut(s) 72
AcuI CTGAAG 1 cut(s) 153
AcyI GRCGYC 1 cut(s) 84
AfiI CCNNNNNNNGG 2 cut(s) 273, 365
AgsI TTSAA 1 cut(s) 578
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AluBI AGCT 4 cut(s) 243, 346, 455, 664
AluI AGCT 4 cut(s) 243, 346, 455, 664
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 2 cut(s) 128, 697
Ama87I CYCGRG 2 cut(s) 273, 347
AoxI GGCC 4 cut(s) 72, 276, 396, 617
ApeKI GCWGC 4 cut(s) 7, 170, 173, 176
ArsI GACNNNNNNTTYG 2 cut(s) 318, 350
AspLEI GCGC 1 cut(s) 95
AspS9I GGNCC 3 cut(s) 19, 276, 617
AsuHPI GGTGA 1 cut(s) 578
AsuII TTCGAA 1 cut(s) 27
AsuNHI GCTAGC 1 cut(s) 487
AvaI CYCGRG 2 cut(s) 273, 347
AvaII GGWCC 1 cut(s) 19
BanI GGYRCC 1 cut(s) 520
BanII GRGCYC 1 cut(s) 348
BbsI GAAGAC 4 cut(s) 114, 141, 327, 333
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 4 cut(s) 19, 182, 185, 188
BccI CCATC 1 cut(s) 166
BceAI ACGGC 1 cut(s) 62
BciVI GTATCC 1 cut(s) 366
BcoDI GTCTC 2 cut(s) 128, 697
BfaI CTAG 1 cut(s) 488
BfuI GTATCC 1 cut(s) 366
BglI GCCNNNNNGGC 1 cut(s) 269
BisI GCNGC 9 cut(s) 8, 33, 59, 75, 96, 168, 171, 174, 177
BlpI GCTNAGC 1 cut(s) 244
BlsI GCNGC 9 cut(s) 9, 34, 60, 76, 97, 169, 172, 175, 178
Bme18I GGWCC 1 cut(s) 19
BmeT110I CYCGRG 2 cut(s) 273, 347
BmgT120I GGNCC 3 cut(s) 19, 276, 617
BmiI GGNNCC 3 cut(s) 21, 505, 522
BmsI GCATC 2 cut(s) 381, 504
BmtI GCTAGC 1 cut(s) 491
BoxI GACNNNNGTC 1 cut(s) 120
BpiI GAAGAC 4 cut(s) 114, 141, 327, 333
Bpu1102I GCTNAGC 1 cut(s) 244
Bpu14I TTCGAA 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 679
BsaHI GRCGYC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 2 cut(s) 15, 267
BsaWI WCCGGW 1 cut(s) 705
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 2 cut(s) 273, 365
Bse118I RCCGGY 1 cut(s) 365
BseDI CCNNGG 2 cut(s) 15, 267
BseGI GGATG 2 cut(s) 149, 316
BseLI CCNNNNNNNGG 2 cut(s) 273, 365
BseMII CTCAG 1 cut(s) 258
BseRI GAGGAG 5 cut(s) 56, 256, 320, 434, 619
BseX3I CGGCCG 1 cut(s) 72
BseXI GCAGC 4 cut(s) 19, 182, 185, 188
BseYI CCCAGC 1 cut(s) 455
Bsh1236I CGCG 2 cut(s) 35, 93
Bsh1285I CGRYCG 2 cut(s) 75, 366
BshFI GGCC 4 cut(s) 74, 278, 398, 619
BshNI GGYRCC 1 cut(s) 520
BsiEI CGRYCG 2 cut(s) 75, 366
BsiHKAI GWGCWC 1 cut(s) 348
BsiHKCI CYCGRG 2 cut(s) 273, 347
BsiSI CCGG 4 cut(s) 71, 359, 366, 706
BslFI GGGAC 1 cut(s) 662
BslI CCNNNNNNNGG 2 cut(s) 273, 365
BsmAI GTCTC 2 cut(s) 128, 697
BsmFI GGGAC 1 cut(s) 662
BsnI GGCC 4 cut(s) 74, 278, 398, 619
Bso31I GGTCTC 1 cut(s) 128
BsoBI CYCGRG 2 cut(s) 273, 347
Bsp119I TTCGAA 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 1 cut(s) 686
Bsp1720I GCTNAGC 1 cut(s) 244
BspACI CCGC 8 cut(s) 33, 59, 75, 96, 153, 165, 168, 216
BspANI GGCC 4 cut(s) 74, 278, 398, 619
BspCNI CTCAG 1 cut(s) 257
BspFNI CGCG 2 cut(s) 35, 93
BspLI GGNNCC 3 cut(s) 21, 505, 522
BspOI GCTAGC 1 cut(s) 491
BspQI GCTCTTC 1 cut(s) 707
BspT104I TTCGAA 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 520
BspTNI GGTCTC 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 365
BssAI RCCGGY 1 cut(s) 365
BssECI CCNNGG 2 cut(s) 15, 267
BssMI GATC 1 cut(s) 686
BssNI GRCGYC 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 15
Bst4CI ACNGT 2 cut(s) 199, 208
Bst6I CTCTTC 1 cut(s) 707
BstACI GRCGYC 1 cut(s) 84
BstBI TTCGAA 1 cut(s) 27
BstC8I GCNNGC 4 cut(s) 293, 396, 489, 493
BstDEI CTNAG 2 cut(s) 234, 244
BstF5I GGATG 2 cut(s) 149, 316
BstFNI CGCG 2 cut(s) 35, 93
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 1 cut(s) 689
BstMAI GTCTC 2 cut(s) 128, 697
BstMBI GATC 1 cut(s) 686
BstMCI CGRYCG 2 cut(s) 75, 366
BstMWI GCNNNNNNNGC 6 cut(s) 83, 92, 173, 176, 269, 292
BstPAI GACNNNNGTC 1 cut(s) 120
BstUI CGCG 2 cut(s) 35, 93
BstV1I GCAGC 4 cut(s) 19, 182, 185, 188
BstV2I GAAGAC 4 cut(s) 114, 141, 327, 333
BstZI CGGCCG 1 cut(s) 72
BsuI GTATCC 1 cut(s) 366
BsuRI GGCC 4 cut(s) 74, 278, 398, 619
BtsCI GGATG 2 cut(s) 149, 316
BtsIMutI CAGTG 2 cut(s) 204, 505
Cac8I GCNNGC 4 cut(s) 293, 396, 489, 493
CfoI GCGC 1 cut(s) 95
Cfr10I RCCGGY 1 cut(s) 365
Cfr13I GGNCC 3 cut(s) 19, 276, 617
CseI GACGC 1 cut(s) 92
CviAII CATG 2 cut(s) 475, 630
DdeI CTNAG 2 cut(s) 234, 244
DpnI GATC 1 cut(s) 688
DpnII GATC 1 cut(s) 686
EaeI YGGCCR 1 cut(s) 72
EagI CGGCCG 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 707
EarI CTCTTC 1 cut(s) 707
Ecl136II GAGCTC 1 cut(s) 346
EclXI CGGCCG 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 348
Eco31I GGTCTC 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 19
Eco52I CGGCCG 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 153
Eco88I CYCGRG 2 cut(s) 273, 347
EcoICRI GAGCTC 1 cut(s) 346
EcoO109I RGGNCCY 1 cut(s) 19
EcoT14I CCWWGG 1 cut(s) 15
EcoT38I GRGCYC 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 2 cut(s) 478, 633
FaiI YATR 6 cut(s) 89, 114, 438, 476, 596, 631
FaqI GGGAC 1 cut(s) 662
FatI CATG 2 cut(s) 474, 629
FauI CCCGC 1 cut(s) 223
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 9 cut(s) 8, 33, 59, 75, 96, 168, 171, 174, 177
FokI GGATG 2 cut(s) 136, 323
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 9 cut(s) 8, 33, 59, 75, 96, 168, 171, 174, 177
FspBI CTAG 1 cut(s) 488
GlaI GCGC 1 cut(s) 94
GluI GCNGC 9 cut(s) 8, 33, 59, 75, 96, 168, 171, 174, 177
GsaI CCCAGC 1 cut(s) 459
HaeIII GGCC 4 cut(s) 74, 278, 398, 619
HapII CCGG 4 cut(s) 71, 359, 366, 706
HgaI GACGC 1 cut(s) 92
HhaI GCGC 1 cut(s) 95
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 2 cut(s) 478, 633
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 6 cut(s) 53, 65, 411, 440, 611, 644
HpaII CCGG 4 cut(s) 71, 359, 366, 706
HphI GGTGA 1 cut(s) 578
Hpy166II GTNNAC 2 cut(s) 82, 569
Hpy188I TCNGA 4 cut(s) 418, 450, 465, 601
Hpy188III TCNNGA 2 cut(s) 349, 408
Hpy8I GTNNAC 2 cut(s) 82, 569
Hpy99I CGWCG 4 cut(s) 83, 86, 107, 338
HpyAV CCTTC 2 cut(s) 153, 662
HpyCH4III ACNGT 2 cut(s) 199, 208
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 1 cut(s) 394
HpyF10VI GCNNNNNNNGC 6 cut(s) 83, 92, 173, 176, 269, 292
HpyF3I CTNAG 2 cut(s) 234, 244
HpySE526I ACGT 1 cut(s) 333
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 2 cut(s) 478, 633
HspAI GCGC 1 cut(s) 93
Kzo9I GATC 1 cut(s) 686
LguI GCTCTTC 1 cut(s) 707
LmnI GCTCC 3 cut(s) 43, 343, 421
Lsp1109I GCAGC 4 cut(s) 19, 182, 185, 188
LweI GCATC 2 cut(s) 381, 504
MaeI CTAG 1 cut(s) 488
MaeII ACGT 1 cut(s) 333
MaeIII GTNAC 1 cut(s) 208
MalI GATC 1 cut(s) 688
MboI GATC 1 cut(s) 686
MboII GAAGA 7 cut(s) 119, 146, 332, 338, 400, 666, 694
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 1 cut(s) 621
MlyI GAGTC 2 cut(s) 47, 449
MmeI TCCRAC 1 cut(s) 495
MseI TTAA 1 cut(s) 659
MspI CCGG 4 cut(s) 71, 359, 366, 706
MvnI CGCG 2 cut(s) 35, 93
MwoI GCNNNNNNNGC 6 cut(s) 83, 92, 173, 176, 269, 292
NdeII GATC 1 cut(s) 686
NheI GCTAGC 1 cut(s) 487
NlaIII CATG 2 cut(s) 478, 633
NlaIV GGNNCC 3 cut(s) 21, 505, 522
NmeAIII GCCGAG 1 cut(s) 248
NspV TTCGAA 1 cut(s) 27
PciSI GCTCTTC 1 cut(s) 707
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PfeI GAWTC 4 cut(s) 65, 411, 611, 644
PflFI GACNNNGTC 1 cut(s) 332
PkrI GCNGC 9 cut(s) 9, 34, 60, 76, 97, 169, 172, 175, 178
PleI GAGTC 2 cut(s) 47, 448
PpsI GAGTC 2 cut(s) 47, 448
PpuMI RGGWCCY 1 cut(s) 19
PshAI GACNNNNGTC 1 cut(s) 120
Psp124BI GAGCTC 1 cut(s) 348
Psp5II RGGWCCY 1 cut(s) 19
PspFI CCCAGC 1 cut(s) 455
PspN4I GGNNCC 3 cut(s) 21, 505, 522
PspPI GGNCC 3 cut(s) 19, 276, 617
PspPPI RGGWCCY 1 cut(s) 19
PsyI GACNNNGTC 1 cut(s) 332
SacI GAGCTC 1 cut(s) 348
SalI GTCGAC 1 cut(s) 80
SapI GCTCTTC 1 cut(s) 707
SaqAI TTAA 1 cut(s) 659
SatI GCNGC 9 cut(s) 8, 33, 59, 75, 96, 168, 171, 174, 177
Sau3AI GATC 1 cut(s) 686
Sau96I GGNCC 3 cut(s) 19, 276, 617
SchI GAGTC 2 cut(s) 47, 449
SduI GDGCHC 1 cut(s) 348
SetI ASST 8 cut(s) 141, 145, 245, 336, 348, 457, 485, 666
SfaNI GCATC 2 cut(s) 381, 504
SfuI TTCGAA 1 cut(s) 27
SgrDI CGTCGACG 1 cut(s) 80
SinI GGWCC 1 cut(s) 19
SmlI CTYRAG 1 cut(s) 694
SmoI CTYRAG 1 cut(s) 694
Sse9I AATT 1 cut(s) 621
SsiI CCGC 8 cut(s) 33, 59, 75, 96, 153, 165, 168, 216
SspMI CTAG 1 cut(s) 488
SstI GAGCTC 1 cut(s) 348
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 2 cut(s) 199, 208
TaiI ACGT 1 cut(s) 336
TaqI TCGA 7 cut(s) 27, 39, 81, 102, 336, 625, 652
TasI AATT 1 cut(s) 621
TauI GCSGC 5 cut(s) 35, 61, 77, 98, 170
TfiI GAWTC 4 cut(s) 65, 411, 611, 644
Tru1I TTAA 1 cut(s) 659
Tru9I TTAA 1 cut(s) 659
TscAI CASTG 2 cut(s) 211, 505
TseI GCWGC 4 cut(s) 7, 170, 173, 176
TspDTI ATGAA 3 cut(s) 17, 333, 491
TspRI CASTG 2 cut(s) 211, 505
Tth111I GACNNNGTC 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 81
XspI CTAG 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.