MD11G1227300.v1.1

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0006822
Physical Location & Seq
Forward (+)
33101310 .. 33108765
7456 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1227300.v1.1.491

Sequence Viewer

Length: 2850 bp
ATGATTAAGGCAGTTTTCGAAGAATCATCGGTTTTCGTGATTTGGGTATTGACTAGTTTGATCTCTCTGGTTCTGGGGATGAGGAATGATGGCGGTCAGAAGCAGCAGCAGGGTGGTGTTCCTCGCCCCGCTCGGTCCAACAGCTTCATTCCCAACTCTTTTCGGGCCATTTCGAGCTACTTGAGGATCGTTTCGTCCGGTGCTTCCACCGTTGCGAGGTCCGCAGCTTCGGTGGCTTCCTCGATTGTGGAGAGGGATGATGATACCAACCATGATCAGGTGAACTGGGCTGGCTTTGACAAGTTAGAAGGTGAGGGGAATGACACTCGTCAAGTTCTCCTTCTGGGTTACCGTTCTGGATTCCAGGTTTGGGATGTTGAAGAAGCAGATAATGTCCGGGACCTGGTTTCCAGATATGATGGTCCTGCCTCATTCATGCAAATGCTACCTAAACCAATAGCATCAAAGAGATCAGAAGACAAATTTGAAGAAAGCCGTCCATTGCTGGTAGTTTGTGCCGATGGGTCCATTTCTGTTGGTAATATCATACAGGATGGCACCGCCACTCCTCACAATGGTGTTACTGCATATAGCCATGACACAGTGAACAGCAGTTTTGTGCCTACTGTTGTTCGGTTTTATTCTTTGAAATCTCAATCTTATGTTCATGTTCTAAAGTTCAGATCAGTTGTTTATTCAGTAAAGTGCAGTTCTCGAGTTGTTGCTATTTCTCTAGCAGCTCAGATTCACTGTTTTGATTCCATGACATTGGAGAGAGAATATACTATTCTTACCAATCCGATAGTTACGGGATTCCCTGGTTCTGGAGGTATAGGTTGTGGACCTCTTGCATTAGGCAATAGATGGCTGGCTTATAGTGGAAGTCCTGTTGCTGTATCCAATTCCGGGCGTGTCAGTCCACAGCATCTGGAACCTTCTGCAAGTTTTTCTGGTTTTCCTTCAAATGGAAGCCTGGTTGCTCACTATGCAAAAGAGTCAAGCAAGCAACTAGCTGCTGGGATTGTAACCCTGGGAGACATGGGATATAAGAAGCTGTCCCGGTACTGCTCTGAGCTTATACCTGATAGTAATACTTCTCTTCAATCAGCGAATCCTGTCTGGAAAGTCAATGGTACTGTCAATGGCCAGTCCACAGACACTGATAATGTTGGAATGGTAATTGTCAGAGATATTGTCAGTAAGGCTGTTATTGCCCAGTTTAGGGCGCACACGAGTCCTATTTCTGCATTACGCTATGATCCTAGTGGCACCCTTTTAGTGACTGCATCAACTCAGGGGCATAACATCAATGTTTTTAAGTTAATGCCTGGAATCTCTTCTTCAACTGATGGTGGTGCATCATATGTACATCTTTACAGGCTGCAACGTGGATTAACAAATGCAGTAGGAGCCATTCTCTTGTTTCAGAATTCCTTGTTGGGTATGCCATTTATCATACAGGACATCAGTTTTAGTGCTGACAGCAACTGGATCATGGTTAGTTCCTCTAGGGGGACAAGCCATCTGTTTGCTATAAATCCTTGGGGAGGATTAGTAAATCTCCCAACTACTGATGCTGGTTTTACCACCAAAAGTACAGGATTGGGTGTTACAACTAGATCGTCAGTTCGTTGGCCAGGTTTGCAAACACCTAATCAGCGAAGCCTTTGCTCAGCTGGTCCCCCAGTTACACTTTCTGTTGTTAGTAGAATAAGAAATGGAAATAATAGTTGGAGAGGCACTGTAAGTGGTGCTGCAGCAGCTGCAACAGGCAAGATGACTACCCTTTCTGGGGCAGTTGCTTCTTCATTCCACAATTGCAAAGGCAATGCTCATTATGTGGATCGCAACTCTTCGAAGGCTAAGTACCACCTCTTGGTTTTTTCTCCTTCTGGTTCCATGATACAATACGCATTGCGAATATCAAATGATCTAGATTCGACAGCTGTGGCTGGATTGAACACTGCTTATGAGTCAGGCCTGGAGGATGATGCAAGATTAGTAGTTGAAGCTATCCAGAAATGGAATATATGTCAAAAGCAAAACCGAAGGGAGCGTGAGGATACTTCTGACATATATGGTGAGAATGGAAATTTCGACAACAATAAGATATGTCGCGAAGGGAAGAAGAAGGGAAACACCATTTACCCTGAAGCTTGCAGTACTGTTACAAAAGCAAAGATCAGCCCTGAGGAAAAACATCAGTTGTATATTTCAGAAGCTGAACTGCAGATGCATGAAGCTCAAAGTCCAGTGTGGGCAAAACCTGAGCTATACTTTCAGTCGATAGTAGTGGAAGGTGTCAAAATGGATGATGAAACTGCTTCAGTAGGGGAAATTGAGATCGAGAGAATTCCAACTCGCATGATTGAAGCAAGATCAAAGGATTTGGTCCCAGTTTTTGAATATCTTCAAACTCCCATATTTCAACAAACAAGGGTTGCTTCTGTAGATAGCAATTTTAGCGGGCAACTTTCACATCAGAGATCTCGTGTATCTGAAAATAGCGGGCTTTCGTGCAGAAACAGTTCAAGCTCTCTTGACACCATGACTGAAAGTGGTGCTGGAGTGGCACAACTTGCTAATGGGATTGAAGAAACTGGACGGGGTGGTTCTCAGACGCCCATAGAAAGAAAGGGCTTTGTAAATAACAATTACAGCCCGAAGACAGAGACTCAGCTTGAGACTGTAAATAATAGAGAGAGCAGCTTAAACTCGGAGGCCCAACTTAAGTTTGTAAATAATGACATAGAAGGCCTGGGATTGGGGAATCTGTTTGGAGGCGAAGGCGATGAGTTTGGTGTGCAGATTTTCTTTACTTCTACTGGGAGATTAACACTGTTTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000785 GO:0001952 GO:0001953 GO:0003674 GO:0003682 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0006355 GO:0006357 GO:0006810 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007030 GO:0007162 GO:0007275 GO:0008047 GO:0008092 GO:0008134 GO:0008150 GO:0009605 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010256 GO:0010468 GO:0010556 GO:0010557 GO:0010594 GO:0010595 GO:0010604 GO:0010628 GO:0010632 GO:0010634 GO:0010638 GO:0010698 GO:0010810 GO:0010812 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0019219 GO:0019222 GO:0019899 GO:0030155 GO:0030234 GO:0030334 GO:0030335 GO:0031023 GO:0031252 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031344 GO:0031346 GO:0031667 GO:0031974 GO:0031981 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032878 GO:0032879 GO:0032880 GO:0032956 GO:0032970 GO:0033043 GO:0033157 GO:0034260 GO:0035035 GO:0035148 GO:0035239 GO:0035257 GO:0035295 GO:0035327 GO:0040012 GO:0040017 GO:0042221 GO:0042393 GO:0042594 GO:0043085 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043547 GO:0043627 GO:0044087 GO:0044089 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045111 GO:0045893 GO:0045935 GO:0045944 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048646 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051270 GO:0051272 GO:0051336 GO:0051345 GO:0051346 GO:0051427 GO:0051489 GO:0051491 GO:0051493 GO:0051495 GO:0051716 GO:0051893 GO:0051895 GO:0060255 GO:0060341 GO:0060491 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070887 GO:0071391 GO:0071840 GO:0080090 GO:0090087 GO:0090109 GO:0090316 GO:0090630 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120032 GO:0120034 GO:0120035 GO:1901888 GO:1901889 GO:1902680 GO:1903391 GO:1903392 GO:1903506 GO:1903508 GO:1903827 GO:1903829 GO:1904951 GO:2000112 GO:2000114 GO:2000145 GO:2000147 GO:2000249 GO:2000251 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCAS3 WD40

Protein Analysis

950

Amino Acids

102.61

Weight (kDa)

6.65

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCAS3_WD40 PF21034 95 - 518 8.7e-42 BCAS3, WD40 repeat
BCAS3 PF12490 657 - 802 3.1e-53 BCAS3 microtubule associated cell migration factor, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 557, 1268
AccB7I CCANNNNNTGG 1 cut(s) 1876
AccBSI CCGCTC 1 cut(s) 131
AccII CGCG 1 cut(s) 2118
AciI CCGC 6 cut(s) 93, 129, 222, 561, 2466, 2508
AclWI GGATC 4 cut(s) 194, 1253, 1499, 1851
AcoI YGGCCR 2 cut(s) 1144, 1634
AcsI RAATTY 4 cut(s) 482, 1429, 2092, 2352
AcuI CTGAAG 2 cut(s) 2172, 2310
AcyI GRCGYC 1 cut(s) 2621
AfaI GTAC 6 cut(s) 1064, 1135, 1368, 1597, 1868, 2164
AflII CTTAAG 1 cut(s) 2729
AhlI ACTAGT 1 cut(s) 53
AjnI CCWGG 9 cut(s) 363, 402, 817, 972, 1029, 1327, 1636, 1980, 2757
AjuI GAANNNNNNNTTGG 4 cut(s) 1421, 1453, 1714, 1746
AleI CACNNNNGTG 1 cut(s) 576
Alw26I GTCTC 3 cut(s) 1029, 2666, 2678
AlwI GGATC 4 cut(s) 194, 1253, 1499, 1851
AlwNI CAGNNNCTG 5 cut(s) 928, 1160, 1488, 1763, 2222
Ama87I CYCGRG 1 cut(s) 714
AoxI GGCC 6 cut(s) 165, 1144, 1634, 1978, 2721, 2755
ApoI RAATTY 4 cut(s) 482, 1429, 2092, 2352
Asp700I GAANNNNTTC 3 cut(s) 1336, 2409, 2527
AspLEI GCGC 1 cut(s) 1228
AsuC2I CCSGG 3 cut(s) 398, 907, 1060
AsuHPI GGTGA 3 cut(s) 292, 323, 2093
AsuII TTCGAA 2 cut(s) 18, 1856
AvaI CYCGRG 1 cut(s) 714
AvaII GGWCC 8 cut(s) 135, 219, 400, 422, 525, 842, 1679, 2392
AxyI CCTNAGG 1 cut(s) 2190
BalI TGGCCA 2 cut(s) 1146, 1636
BanI GGYRCC 2 cut(s) 557, 1268
BarI GAAGNNNNNNTAC 2 cut(s) 1850, 1882
BauI CACGAG 2 cut(s) 1231, 2490
BbsI GAAGAC 2 cut(s) 483, 2672
BccI CCATC 7 cut(s) 83, 413, 515, 548, 858, 1343, 1530
BceAI ACGGC 1 cut(s) 480
BcgI CGANNNNNNTGC 2 cut(s) 1650, 1684
BciT130I CCWGG 9 cut(s) 365, 404, 819, 974, 1031, 1329, 1638, 1982, 2759
BciVI GTATCC 2 cut(s) 907, 2056
BclI TGATCA 1 cut(s) 274
BcnI CCSGG 3 cut(s) 398, 907, 1060
BcoDI GTCTC 3 cut(s) 1029, 2666, 2678
BcuI ACTAGT 1 cut(s) 53
BfaI CTAG 7 cut(s) 54, 734, 1010, 1263, 1509, 1617, 1934
BfmI CTRYAG 3 cut(s) 1755, 2228, 2448
BfrI CTTAAG 1 cut(s) 2729
BfuI GTATCC 2 cut(s) 907, 2056
BglII AGATCT 1 cut(s) 2486
BlpI GCTNAGC 1 cut(s) 1672
BmcAI AGTACT 1 cut(s) 2164
Bme18I GGWCC 8 cut(s) 135, 219, 400, 422, 525, 842, 1679, 2392
BmeT110I CYCGRG 1 cut(s) 714
BmiI GGNNCC 9 cut(s) 401, 526, 559, 933, 1270, 1411, 1681, 1897, 2394
BmrI ACTGGG 5 cut(s) 295, 1210, 1679, 2390, 2835
BmsI GCATC 7 cut(s) 470, 934, 1295, 1367, 1564, 1981, 2223
BmuI ACTGGG 5 cut(s) 295, 1210, 1679, 2390, 2835
BoxI GACNNNNGTC 1 cut(s) 327
BpiI GAAGAC 2 cut(s) 483, 2672
BplI GAGNNNNNCTC 2 cut(s) 1401, 1433
BpmI CTGGAG 3 cut(s) 846, 2003, 2586
Bpu10I CCTNAGC 1 cut(s) 2268
Bpu1102I GCTNAGC 1 cut(s) 1672
Bpu14I TTCGAA 2 cut(s) 18, 1856
BpuEI CTTGAG 2 cut(s) 202, 2702
BpuMI CCSGG 3 cut(s) 398, 907, 1060
BsaHI GRCGYC 1 cut(s) 2621
BsaJI CCNNGG 5 cut(s) 817, 1029, 1030, 1541, 2758
BsaWI WCCGGW 1 cut(s) 197
BsaXI ACNNNNNCTCC 4 cut(s) 550, 580, 1539, 1569
Bse1I ACTGG 9 cut(s) 290, 1147, 1216, 1493, 1685, 2252, 2396, 2605, 2830
Bse21I CCTNAGG 1 cut(s) 2190
Bse3DI GCAATG 3 cut(s) 500, 1834, 1913
BseBI CCWGG 9 cut(s) 365, 404, 819, 974, 1031, 1329, 1638, 1982, 2759
BseDI CCNNGG 5 cut(s) 817, 1029, 1030, 1541, 2758
BseGI GGATG 6 cut(s) 84, 262, 379, 559, 1993, 2317
BseMI GCAATG 3 cut(s) 500, 1834, 1913
BseMII CTCAG 8 cut(s) 755, 1062, 1307, 1686, 2181, 2259, 2630, 2690
BseNI ACTGG 9 cut(s) 290, 1147, 1216, 1493, 1685, 2252, 2396, 2605, 2830
BseRI GAGGAG 1 cut(s) 558
BseYI CCCAGC 1 cut(s) 1016
BsgI GTGCAG 3 cut(s) 727, 2539, 2825
Bsh1236I CGCG 1 cut(s) 2118
BshFI GGCC 6 cut(s) 167, 1146, 1636, 1980, 2723, 2757
BshNI GGYRCC 2 cut(s) 557, 1268
BsiHKCI CYCGRG 1 cut(s) 714
BsiSI CCGG 4 cut(s) 198, 397, 906, 1060
BslFI GGGAC 5 cut(s) 413, 1042, 1528, 1665, 2378
BsmAI GTCTC 3 cut(s) 1029, 2666, 2678
BsmFI GGGAC 5 cut(s) 413, 1042, 1528, 1665, 2378
BsnI GGCC 6 cut(s) 167, 1146, 1636, 1980, 2723, 2757
BsoBI CYCGRG 1 cut(s) 714
Bsp119I TTCGAA 2 cut(s) 18, 1856
Bsp1407I TGTACA 1 cut(s) 1366
Bsp1720I GCTNAGC 1 cut(s) 1672
Bsp68I TCGCGA 1 cut(s) 2118
BspACI CCGC 6 cut(s) 93, 129, 222, 561, 2466, 2508
BspANI GGCC 6 cut(s) 167, 1146, 1636, 1980, 2723, 2757
BspCNI CTCAG 8 cut(s) 754, 1063, 1306, 1685, 2182, 2260, 2629, 2689
BspFNI CGCG 1 cut(s) 2118
BspLI GGNNCC 9 cut(s) 401, 526, 559, 933, 1270, 1411, 1681, 1897, 2394
BspMAI CTGCAG 2 cut(s) 1759, 2232
BspPI GGATC 4 cut(s) 194, 1253, 1499, 1851
BspT104I TTCGAA 2 cut(s) 18, 1856
BspT107I GGYRCC 2 cut(s) 557, 1268
BspTI CTTAAG 1 cut(s) 2729
BsrBI CCGCTC 1 cut(s) 131
BsrDI GCAATG 3 cut(s) 500, 1834, 1913
BsrGI TGTACA 1 cut(s) 1366
BsrI ACTGG 9 cut(s) 290, 1147, 1216, 1493, 1685, 2252, 2396, 2605, 2830
BssECI CCNNGG 5 cut(s) 817, 1029, 1030, 1541, 2758
BssNI GRCGYC 1 cut(s) 2621
BssSI CACGAG 2 cut(s) 1231, 2490
BssT1I CCWWGG 1 cut(s) 1541
Bst2BI CACGAG 2 cut(s) 1231, 2490
Bst2UI CCWGG 9 cut(s) 365, 404, 819, 974, 1031, 1329, 1638, 1982, 2759
Bst6I CTCTTC 3 cut(s) 1104, 1342, 1858
BstACI GRCGYC 1 cut(s) 2621
BstAFI CTTAAG 1 cut(s) 2729
BstAPI GCANNNNNTGC 2 cut(s) 1763, 2579
BstAUI TGTACA 1 cut(s) 1366
BstBI TTCGAA 2 cut(s) 18, 1856
BstC8I GCNNGC 6 cut(s) 292, 870, 1004, 2158, 2468, 2510
BstDEI CTNAG 9 cut(s) 741, 1071, 1293, 1672, 1863, 2190, 2268, 2616, 2676
BstEII GGTNACC 1 cut(s) 347
BstENI CCTNNNNNAGG 1 cut(s) 1545
BstF5I GGATG 6 cut(s) 84, 262, 379, 559, 1993, 2317
BstFNI CGCG 1 cut(s) 2118
BstHHI GCGC 1 cut(s) 1228
BstMAI GTCTC 3 cut(s) 1029, 2666, 2678
BstNI CCWGG 9 cut(s) 365, 404, 819, 974, 1031, 1329, 1638, 1982, 2759
BstPAI GACNNNNGTC 1 cut(s) 327
BstPI GGTNACC 1 cut(s) 347
BstSFI CTRYAG 3 cut(s) 1755, 2228, 2448
BstUI CGCG 1 cut(s) 2118
BstV2I GAAGAC 2 cut(s) 483, 2672
BstX2I RGATCY 1 cut(s) 2486
BstXI CCANNNNNNTGG 1 cut(s) 769
BstYI RGATCY 1 cut(s) 2486
Bsu36I CCTNAGG 1 cut(s) 2190
BsuI GTATCC 2 cut(s) 907, 2056
BsuRI GGCC 6 cut(s) 167, 1146, 1636, 1980, 2723, 2757
BtgZI GCGATG 1 cut(s) 2805
BtsCI GGATG 6 cut(s) 84, 262, 379, 559, 1993, 2317
BtsI GCAGTG 1 cut(s) 1962
BtsIMutI CAGTG 7 cut(s) 609, 748, 1158, 1740, 1962, 2259, 2837
BtuMI TCGCGA 1 cut(s) 2118
Cac8I GCNNGC 6 cut(s) 292, 870, 1004, 2158, 2468, 2510
CaiI CAGNNNCTG 5 cut(s) 928, 1160, 1488, 1763, 2222
CfoI GCGC 1 cut(s) 1228
CseI GACGC 1 cut(s) 2629
CsiI ACCWGGT 1 cut(s) 402
Csp6I GTAC 6 cut(s) 1063, 1134, 1367, 1596, 1867, 2163
CviQI GTAC 6 cut(s) 1063, 1134, 1367, 1596, 1867, 2163
DdeI CTNAG 9 cut(s) 741, 1071, 1293, 1672, 1863, 2190, 2268, 2616, 2676
EaeI YGGCCR 2 cut(s) 1144, 1634
Eam1104I CTCTTC 3 cut(s) 1104, 1342, 1858
EarI CTCTTC 3 cut(s) 1104, 1342, 1858
Eco130I CCWWGG 1 cut(s) 1541
Eco147I AGGCCT 2 cut(s) 1980, 2757
Eco47I GGWCC 8 cut(s) 135, 219, 400, 422, 525, 842, 1679, 2392
Eco57I CTGAAG 2 cut(s) 2172, 2310
Eco81I CCTNAGG 1 cut(s) 2190
Eco88I CYCGRG 1 cut(s) 714
Eco91I GGTNACC 1 cut(s) 347
EcoNI CCTNNNNNAGG 1 cut(s) 1545
EcoO109I RGGNCCY 1 cut(s) 400
EcoO65I GGTNACC 1 cut(s) 347
EcoRI GAATTC 2 cut(s) 1429, 2352
EcoRII CCWGG 9 cut(s) 363, 402, 817, 972, 1029, 1327, 1636, 1980, 2757
EcoT14I CCWWGG 1 cut(s) 1541
EcoT22I ATGCAT 1 cut(s) 2238
ErhI CCWWGG 1 cut(s) 1541
FalI AAGNNNNNCTT 4 cut(s) 324, 356, 2428, 2460
FaqI GGGAC 5 cut(s) 413, 1042, 1528, 1665, 2378
FauI CCCGC 3 cut(s) 136, 2459, 2501
FauNDI CATATG 1 cut(s) 1363
FbaI TGATCA 1 cut(s) 274
FokI GGATG 6 cut(s) 91, 269, 386, 566, 2000, 2324
FspBI CTAG 7 cut(s) 54, 734, 1010, 1263, 1509, 1617, 1934
GlaI GCGC 1 cut(s) 1227
GsaI CCCAGC 1 cut(s) 1020
GsuI CTGGAG 3 cut(s) 846, 2003, 2586
HaeIII GGCC 6 cut(s) 167, 1146, 1636, 1980, 2723, 2757
HapII CCGG 4 cut(s) 198, 397, 906, 1060
HgaI GACGC 1 cut(s) 2629
HhaI GCGC 1 cut(s) 1228
Hin1I GRCGYC 1 cut(s) 2621
Hin6I GCGC 1 cut(s) 1226
HinP1I GCGC 1 cut(s) 1226
HindIII AAGCTT 1 cut(s) 2154
HpaII CCGG 4 cut(s) 198, 397, 906, 1060
HphI GGTGA 3 cut(s) 292, 323, 2093
Hpy166II GTNNAC 5 cut(s) 283, 607, 842, 920, 1152
Hpy8I GTNNAC 5 cut(s) 283, 607, 842, 920, 1152
HpyCH4IV ACGT 1 cut(s) 1387
HpyF3I CTNAG 9 cut(s) 741, 1071, 1293, 1672, 1863, 2190, 2268, 2616, 2676
HpySE526I ACGT 1 cut(s) 1387
Hsp92I GRCGYC 1 cut(s) 2621
HspAI GCGC 1 cut(s) 1226
Ksp22I TGATCA 1 cut(s) 274
LmnI GCTCC 2 cut(s) 1409, 2053
LweI GCATC 7 cut(s) 470, 934, 1295, 1367, 1564, 1981, 2223
MabI ACCWGGT 1 cut(s) 402
MaeI CTAG 7 cut(s) 54, 734, 1010, 1263, 1509, 1617, 1934
MaeII ACGT 1 cut(s) 1387
MaeIII GTNAC 8 cut(s) 347, 580, 805, 1024, 1279, 1609, 1687, 2167
MbiI CCGCTC 1 cut(s) 131
MfeI CAATTG 1 cut(s) 1816
MflI RGATCY 1 cut(s) 2486
MlsI TGGCCA 2 cut(s) 1146, 1636
MluNI TGGCCA 2 cut(s) 1146, 1636
MlyI GAGTC 4 cut(s) 1004, 1243, 1982, 2668
MmeI TCCRAC 4 cut(s) 162, 1150, 1712, 2381
Mox20I TGGCCA 2 cut(s) 1146, 1636
Mph1103I ATGCAT 1 cut(s) 2238
MroXI GAANNNNTTC 3 cut(s) 1336, 2409, 2527
MscI TGGCCA 2 cut(s) 1146, 1636
MseI TTAA 7 cut(s) 6, 1317, 1322, 1394, 2711, 2730, 2834
MslI CAYNNNNRTG 2 cut(s) 440, 576
Msp20I TGGCCA 2 cut(s) 1146, 1636
MspA1I CMGCKG 3 cut(s) 1676, 1763, 1946
MspCI CTTAAG 1 cut(s) 2729
MspI CCGG 4 cut(s) 198, 397, 906, 1060
MunI CAATTG 1 cut(s) 1816
MvaI CCWGG 9 cut(s) 365, 404, 819, 974, 1031, 1329, 1638, 1982, 2759
MvnI CGCG 1 cut(s) 2118
NciI CCSGG 3 cut(s) 398, 907, 1060
NdeI CATATG 1 cut(s) 1363
NlaIV GGNNCC 9 cut(s) 401, 526, 559, 933, 1270, 1411, 1681, 1897, 2394
NmuCI GTSAC 1 cut(s) 1279
NruI TCGCGA 1 cut(s) 2118
NsiI ATGCAT 1 cut(s) 2238
NspV TTCGAA 2 cut(s) 18, 1856
OliI CACNNNNGTG 1 cut(s) 576
PaeR7I CTCGAG 1 cut(s) 714
PasI CCCWGGG 1 cut(s) 1030
PceI AGGCCT 2 cut(s) 1980, 2757
PdmI GAANNNNTTC 3 cut(s) 1336, 2409, 2527
PfeI GAWTC 9 cut(s) 23, 360, 745, 758, 813, 1111, 1332, 1937, 2770
PflMI CCANNNNNTGG 1 cut(s) 1876
PfoI TCCNGGA 1 cut(s) 396
PleI GAGTC 4 cut(s) 1003, 1242, 1981, 2668
PpsI GAGTC 4 cut(s) 1003, 1242, 1981, 2668
PpuMI RGGWCCY 1 cut(s) 400
PshAI GACNNNNGTC 1 cut(s) 327
Psp5II RGGWCCY 1 cut(s) 400
Psp6I CCWGG 9 cut(s) 363, 402, 817, 972, 1029, 1327, 1636, 1980, 2757
PspEI GGTNACC 1 cut(s) 347
PspFI CCCAGC 1 cut(s) 1016
PspGI CCWGG 9 cut(s) 363, 402, 817, 972, 1029, 1327, 1636, 1980, 2757
PspN4I GGNNCC 9 cut(s) 401, 526, 559, 933, 1270, 1411, 1681, 1897, 2394
PspPPI RGGWCCY 1 cut(s) 400
PstI CTGCAG 2 cut(s) 1759, 2232
PstNI CAGNNNCTG 5 cut(s) 928, 1160, 1488, 1763, 2222
PsuI RGATCY 1 cut(s) 2486
PvuII CAGCTG 3 cut(s) 1676, 1763, 1946
RruI TCGCGA 1 cut(s) 2118
RsaI GTAC 6 cut(s) 1064, 1135, 1368, 1597, 1868, 2164
RsaNI GTAC 6 cut(s) 1063, 1134, 1367, 1596, 1867, 2163
RseI CAYNNNNRTG 2 cut(s) 440, 576
SaqAI TTAA 7 cut(s) 6, 1317, 1322, 1394, 2711, 2730, 2834
ScaI AGTACT 1 cut(s) 2164
SchI GAGTC 4 cut(s) 1004, 1243, 1982, 2668
SexAI ACCWGGT 1 cut(s) 402
SfaNI GCATC 7 cut(s) 470, 934, 1295, 1367, 1564, 1981, 2223
SfcI CTRYAG 3 cut(s) 1755, 2228, 2448
Sfr274I CTCGAG 1 cut(s) 714
SfuI TTCGAA 2 cut(s) 18, 1856
SinI GGWCC 8 cut(s) 135, 219, 400, 422, 525, 842, 1679, 2392
SlaI CTCGAG 1 cut(s) 714
SmiMI CAYNNNNRTG 2 cut(s) 440, 576
SmlI CTYRAG 4 cut(s) 181, 714, 2681, 2729
SmoI CTYRAG 4 cut(s) 181, 714, 2681, 2729
SpeI ACTAGT 1 cut(s) 53
SseBI AGGCCT 2 cut(s) 1980, 2757
SsiI CCGC 6 cut(s) 93, 129, 222, 561, 2466, 2508
SspMI CTAG 7 cut(s) 54, 734, 1010, 1263, 1509, 1617, 1934
StuI AGGCCT 2 cut(s) 1980, 2757
StyI CCWWGG 1 cut(s) 1541
TaiI ACGT 1 cut(s) 1390
TaqI TCGA 9 cut(s) 18, 173, 242, 715, 1856, 1940, 2097, 2285, 2346
TaqII GACCGA 1 cut(s) 123
TatI WGTACW 3 cut(s) 1366, 1595, 2162
TfiI GAWTC 9 cut(s) 23, 360, 745, 758, 813, 1111, 1332, 1937, 2770
Tru1I TTAA 7 cut(s) 6, 1317, 1322, 1394, 2711, 2730, 2834
Tru9I TTAA 7 cut(s) 6, 1317, 1322, 1394, 2711, 2730, 2834
TscAI CASTG 7 cut(s) 609, 755, 1165, 1747, 1969, 2259, 2844
TseFI GTSAC 1 cut(s) 1279
Tsp45I GTSAC 1 cut(s) 1279
TspDTI ATGAA 6 cut(s) 136, 424, 656, 1797, 2253, 2331
TspRI CASTG 7 cut(s) 609, 755, 1165, 1747, 1969, 2259, 2844
Van91I CCANNNNNTGG 1 cut(s) 1876
Vha464I CTTAAG 1 cut(s) 2729
VpaK11BI GGWCC 8 cut(s) 135, 219, 400, 422, 525, 842, 1679, 2392
XagI CCTNNNNNAGG 1 cut(s) 1545
XapI RAATTY 4 cut(s) 482, 1429, 2092, 2352
XbaI TCTAGA 1 cut(s) 1933
XhoI CTCGAG 1 cut(s) 714
XmnI GAANNNNTTC 3 cut(s) 1336, 2409, 2527
XspI CTAG 7 cut(s) 54, 734, 1010, 1263, 1509, 1617, 1934
ZrmI AGTACT 1 cut(s) 2164
Zsp2I ATGCAT 1 cut(s) 2238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.