Rroxscaffold_1G00043730

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006822
Physical Location & Seq
Forward (+)
62440488 .. 62448242
7755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00043730.1

Sequence Viewer

Length: 2619 bp
ATGATGAATGATGCTGGCCGGAATGGTGGTGGTGTTTCCCGCCATGGCAAGACCAACGGCTTCATTCCAAGCTCGTTTCGGGCCCTTTCGAGTTATCTAAGAGTTGTTTCTTCTGGGGCTTCAACTGTTGCCAGGTCGGCGGTGTCGGCGGCCTCTTCTATTGCGGAGAGGGATAATGATGCCAACCATGATCAGAATTTAGGGTTTTATGCATGCATGGTTCACAAGATTGGATTCCTTGTTGACCTACTATCTATTGAGGAATTTGGCGTTTTCGTGCTGGGAATAGTGGATAATCTAGTAGATTTTGTCGTTTGGGATGTTGAAGAAGCAGATAATGTCCGTGACCTGGTTTCCACACATGATGGTCCTATTTCATTTATGCAAATGCTACCTAAACCAATAGCATCAAAGAGATCGGTTGACAAGTTTGCTGAATGCCGTCCATTGCTGGTAGTTTGTGCTGATGGGTCAATTTCTGTTGATAATAACATAGAGGATGGCACTGCCCCTCGCAATGGTGTTACTACAAACAGCCATGACAAAGTGAACAGTAGTTTTGTGCCTACTGCTGTTCGATTCTATTCCTTGAGATCTCAATCCTATGTTCATGTGCTGAAGTTCAGATCAGCTATTTATTCTGTAAAGTGCAGTTCTCGAGTTGTTGCTATTTCTCAAGCAACTCAGATACACTGTTTTGATGCCACAACGTTGGAGCGGGAATATACTATTCTCACCAATCCTATAGTTACTGGATTCCCTGGTTCTGGAGGTATAAGCTGTGGACCTGTTGCAGTAGGCAAGAGATGGCTGGCTTATAGTGGAAGTCCTGTTGCAGTAACCAATTCTGGGCGCGTTAATCCACAACATCTGGCACCTTCCGCTACTTTTCCTTCAAATGGGAGCCTGGTTATTCACTATGCAAAAGAGTCAAGCAAGCAACTAGCTGCTGGGATTGCGACCTTGGGAGACATTGGGTATAAGAAGCTGTCCCAGTACTACTCGGAGCTTGTACCTGATAGTATTACTTATCCTCAGTCAGGGAATCCTGGCCGGAAAGCCAATGGAACTGTCAATGGCCAGTCAACAGACACAGATAGTGTTGGAATGGTCATTGTCAGAGACATTGTCAGTAAAGCTGTTATTGCACAGTTCAGGGCTCACCAGAGTCCTATTTCTGCATTATGCTTTGATCCTAGTGGCACGCTTTTAGTGTCTGCTTCGGTTCAGGGGCATAACATCAATGTTTTTAAGATAATGCCTGGACCTCCTGGAGTCTCCTCTTCAACTGATGCTGATGCATCTCATGTACATCTTTACAGGCTACAGCGCGGAATGACGCATGCGATTATTCAGGACATTAGTTTCAGTGACGACAGCAACTGGATTATGGTGTCACAACTAGGTCAGCAGTTCGTTGGCCACCTAATTCAGGTTCACAAATGCCTAATCAGCAGAGCCTCTGTTCATCTGGTCCCCCAGTTACACTTTCTGTTGTTAGTAGAACTTTCTGTTGTTAAGAATAAAAATGGAAACAATAGCTGGAGAGGCACTGTAACTGGTGCTGCGGCCGCCGCCACTGGCAAGATGAATTCTCTCTCTGGGGCAATTGCTTCCTCTTTCCATAATTGCAAAGGCAATGATTACCATGTGGATTCCAGCTCTTTGAAGGCTAAGTACCACCTTTTGGTATTTTCTCCATCTGGTTGCATGATACAATATGCATTGCGAATACCAAATGGTCTAGATTTAACAACTGTGACTCGATTAAACACTGCTTATGAGTCAGATCATGAGTGTGATGCAAGATTAGTAGTTGAAGCTATCCAGAAGTGGAACGTATGTCAGAAGCAAAGCCGAAGAGAACGGGAGGATAATACTGACATATATGGTGAGAATGGAAATTTAGACAACAGTAAGATATATCCAGAAGGGATGAAGAAGGGAAACATGGTATATCCTGAAGCTTGGAGTTCTGTCACAAAAGAAAAGATCACCCCTGAGGAAAAACATCATTTGTATATTTCAGAAGCCGAACTGCAGATGCATGAAACTCGAAGTCCGCTATGGGCAAGACCTGAGCTATACTTTCAGTCAATGATTATGGAAGGTGTGAAGATGGATGGTGAAACTGCTACAGGAGGAGAAATTGAGATTGAAAGGATTCCGACTCGCATGATTGAAGCAAGGTCAAAGGATTTAGTCCCAGTTTTTGACTATCTTCAGACTCCAGTGTTCCAACAAACAAGGGTTGCTGCTGTGAGTAGCAATATCAGTGGGCAACTTCTTCAACAGAGGTCTGGGATATCTGAAAAGGGCAGGCTTTCATGCAGAAGCAGTTCAAACTCTCTTGATACCATGACTGACAGCGGTGCTGGACTCGCAGAACATCGCAGTGGTAGTGAAGAAACTGGGTGGGGTGTTCCTCAGATGACAATAGGAAGCACGGGCTCTGTAAATAACAATGACAGCCCAGGGACAAAGACTCAGCTTGAGACTGTAAATAGTAGAGAGCACGACTTTAAAATGGAGGCTCAACTCAAGTTTGTAAATAATGACATAGAAGAAGACATGGGAACAGGGAATCTTTTTGAACAGGGAGGTGATGAGTATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000785 GO:0001952 GO:0001953 GO:0003674 GO:0003682 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0006355 GO:0006357 GO:0006810 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007030 GO:0007162 GO:0007275 GO:0008047 GO:0008092 GO:0008134 GO:0008150 GO:0009605 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010256 GO:0010468 GO:0010556 GO:0010557 GO:0010594 GO:0010595 GO:0010604 GO:0010628 GO:0010632 GO:0010634 GO:0010638 GO:0010698 GO:0010810 GO:0010812 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0019219 GO:0019222 GO:0019899 GO:0030155 GO:0030234 GO:0030334 GO:0030335 GO:0031023 GO:0031252 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031344 GO:0031346 GO:0031667 GO:0031974 GO:0031981 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032878 GO:0032879 GO:0032880 GO:0032956 GO:0032970 GO:0033043 GO:0033157 GO:0034260 GO:0035035 GO:0035148 GO:0035239 GO:0035257 GO:0035295 GO:0035327 GO:0040012 GO:0040017 GO:0042221 GO:0042393 GO:0042594 GO:0043085 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043547 GO:0043627 GO:0044087 GO:0044089 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045111 GO:0045893 GO:0045935 GO:0045944 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048646 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051270 GO:0051272 GO:0051336 GO:0051345 GO:0051346 GO:0051427 GO:0051489 GO:0051491 GO:0051493 GO:0051495 GO:0051716 GO:0051893 GO:0051895 GO:0060255 GO:0060341 GO:0060491 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070887 GO:0071391 GO:0071840 GO:0080090 GO:0090087 GO:0090109 GO:0090316 GO:0090630 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120032 GO:0120034 GO:0120035 GO:1901888 GO:1901889 GO:1902680 GO:1903391 GO:1903392 GO:1903506 GO:1903508 GO:1903827 GO:1903829 GO:1904951 GO:2000112 GO:2000114 GO:2000145 GO:2000147 GO:2000249 GO:2000251 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCAS3 WD40

Protein Analysis

872

Amino Acids

94.8

Weight (kDa)

6.1

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCAS3_WD40 PF21034 103 - 469 3.7e-37 BCAS3, WD40 repeat
BCAS3 PF12490 594 - 739 5.4e-55 BCAS3 microtubule associated cell migration factor, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 874
AccB7I CCANNNNNTGG 1 cut(s) 1687
AccBSI CCGCTC 1 cut(s) 718
AccII CGCG 2 cut(s) 855, 1332
AclI AACGTT 1 cut(s) 710
AclWI GGATC 1 cut(s) 1187
AcoI YGGCCR 5 cut(s) 16, 1051, 1078, 1420, 1569
AcsI RAATTY 4 cut(s) 196, 263, 1591, 1903
AcuI CTGAAG 3 cut(s) 638, 1983, 2207
AfaI GTAC 4 cut(s) 998, 1014, 1311, 1679
AfiI CCNNNNNNNGG 8 cut(s) 349, 518, 767, 849, 899, 1040, 1432, 1687
AjnI CCWGG 8 cut(s) 131, 348, 760, 906, 1048, 1261, 1270, 2473
Alw21I GWGCWC 1 cut(s) 2517
Alw26I GTCTC 4 cut(s) 963, 1116, 1282, 2489
AlwI GGATC 1 cut(s) 1187
AlwNI CAGNNNCTG 1 cut(s) 1383
Ama87I CYCGRG 1 cut(s) 657
AoxI GGCC 7 cut(s) 16, 81, 150, 1051, 1078, 1420, 1569
ApaI GGGCCC 1 cut(s) 85
ApeKI GCWGC 3 cut(s) 947, 1565, 2255
ApoI RAATTY 4 cut(s) 196, 263, 1591, 1903
Asp700I GAANNNNTTC 2 cut(s) 2163, 2338
AspLEI GCGC 2 cut(s) 855, 1332
AspS9I GGNCC 6 cut(s) 81, 82, 368, 785, 1265, 1474
AsuHPI GGTGA 6 cut(s) 727, 1154, 1904, 1987, 2138, 2615
AvaI CYCGRG 1 cut(s) 657
AvaII GGWCC 4 cut(s) 368, 785, 1265, 1474
AxyI CCTNAGG 1 cut(s) 2001
BaeGI GKGCMC 1 cut(s) 85
BalI TGGCCA 2 cut(s) 1080, 1422
BanI GGYRCC 1 cut(s) 874
BanII GRGCYC 3 cut(s) 85, 1162, 2453
BarI GAAGNNNNNNTAC 2 cut(s) 1661, 1693
BbsI GAAGAC 1 cut(s) 2574
Bbv12I GWGCWC 1 cut(s) 2517
BbvI GCAGC 3 cut(s) 934, 1552, 2242
BccI CCATC 7 cut(s) 359, 461, 494, 801, 1708, 2113, 2117
BceAI ACGGC 2 cut(s) 73, 426
BcgI CGANNNNNNTGC 2 cut(s) 2036, 2070
BciT130I CCWGG 8 cut(s) 133, 350, 762, 908, 1050, 1263, 1272, 2475
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 4 cut(s) 963, 1116, 1282, 2489
BfaI CTAG 5 cut(s) 299, 944, 1197, 1403, 1745
BfmI CTRYAG 4 cut(s) 744, 1325, 2039, 2136
BglI GCCNNNNNGGC 1 cut(s) 137
BglII AGATCT 1 cut(s) 593
BisI GCNGC 7 cut(s) 150, 948, 1566, 1569, 1572, 1575, 2256
BlsI GCNGC 7 cut(s) 151, 949, 1567, 1570, 1573, 1576, 2257
BmcAI AGTACT 1 cut(s) 998
Bme1390I CCNGG 8 cut(s) 133, 350, 762, 908, 1050, 1263, 1272, 2475
Bme18I GGWCC 4 cut(s) 368, 785, 1265, 1474
BmeT110I CYCGRG 1 cut(s) 657
BmgT120I GGNCC 6 cut(s) 81, 82, 368, 785, 1265, 1474
BmiI GGNNCC 4 cut(s) 83, 876, 905, 1476
BmrFI CCNGG 8 cut(s) 133, 350, 762, 908, 1050, 1263, 1272, 2475
BmrI ACTGGG 4 cut(s) 988, 1474, 2201, 2421
BmsI GCATC 8 cut(s) 169, 416, 691, 1282, 1288, 1310, 1792, 2034
BmuI ACTGGG 4 cut(s) 988, 1474, 2201, 2421
BpiI GAAGAC 1 cut(s) 2574
BpmI CTGGAG 4 cut(s) 789, 1293, 1564, 2214
Bpu10I CCTNAGC 1 cut(s) 2079
BpuEI CTTGAG 4 cut(s) 610, 660, 2513, 2525
BsaBI GATNNNNATC 1 cut(s) 598
BsaJI CCNNGG 5 cut(s) 43, 760, 963, 2473, 2474
Bsc4I CCNNNNNNNGG 8 cut(s) 349, 518, 767, 849, 899, 1040, 1432, 1687
Bse21I CCTNAGG 1 cut(s) 2001
Bse3DI GCAATG 4 cut(s) 446, 523, 1645, 1724
Bse8I GATNNNNATC 1 cut(s) 598
BseBI CCWGG 8 cut(s) 133, 350, 762, 908, 1050, 1263, 1272, 2475
BseDI CCNNGG 5 cut(s) 43, 760, 963, 2473, 2474
BseGI GGATG 4 cut(s) 325, 505, 1941, 2128
BseJI GATNNNNATC 1 cut(s) 598
BseLI CCNNNNNNNGG 8 cut(s) 349, 518, 767, 849, 899, 1040, 1432, 1687
BseMI GCAATG 4 cut(s) 446, 523, 1645, 1724
BseMII CTCAG 6 cut(s) 698, 1049, 1992, 2070, 2441, 2501
BseRI GAGGAG 2 cut(s) 1270, 2157
BseSI GKGCMC 1 cut(s) 85
BseX3I CGGCCG 1 cut(s) 1569
BseXI GCAGC 3 cut(s) 934, 1552, 2242
BseYI CCCAGC 2 cut(s) 280, 950
BsgI GTGCAG 1 cut(s) 670
Bsh1236I CGCG 2 cut(s) 855, 1332
Bsh1285I CGRYCG 1 cut(s) 1572
BshFI GGCC 7 cut(s) 18, 83, 152, 1053, 1080, 1422, 1571
BshNI GGYRCC 1 cut(s) 874
BsiEI CGRYCG 1 cut(s) 1572
BsiHKAI GWGCWC 1 cut(s) 2517
BsiHKCI CYCGRG 1 cut(s) 657
BsiSI CCGG 2 cut(s) 19, 1054
BslFI GGGAC 4 cut(s) 976, 1460, 2189, 2491
BslI CCNNNNNNNGG 8 cut(s) 349, 518, 767, 849, 899, 1040, 1432, 1687
BsmAI GTCTC 4 cut(s) 963, 1116, 1282, 2489
BsmFI GGGAC 4 cut(s) 976, 1460, 2189, 2491
BsmI GAATGC 1 cut(s) 443
BsnI GGCC 7 cut(s) 18, 83, 152, 1053, 1080, 1422, 1571
BsoBI CYCGRG 1 cut(s) 657
Bsp120I GGGCCC 1 cut(s) 81
Bsp1286I GDGCHC 4 cut(s) 85, 1162, 2453, 2517
Bsp1407I TGTACA 1 cut(s) 1309
Bsp143I GATC 7 cut(s) 190, 416, 593, 626, 1192, 1789, 1992
Bsp19I CCATGG 1 cut(s) 43
BspANI GGCC 7 cut(s) 18, 83, 152, 1053, 1080, 1422, 1571
BspCNI CTCAG 6 cut(s) 697, 1048, 1993, 2071, 2440, 2500
BspFNI CGCG 2 cut(s) 855, 1332
BspHI TCATGA 1 cut(s) 1792
BspLI GGNNCC 4 cut(s) 83, 876, 905, 1476
BspMAI CTGCAG 1 cut(s) 2043
BspPI GGATC 1 cut(s) 1187
BspT107I GGYRCC 1 cut(s) 874
BsrBI CCGCTC 1 cut(s) 718
BsrDI GCAATG 4 cut(s) 446, 523, 1645, 1724
BsrGI TGTACA 1 cut(s) 1309
BssECI CCNNGG 5 cut(s) 43, 760, 963, 2473, 2474
BssMI GATC 7 cut(s) 190, 416, 593, 626, 1192, 1789, 1992
BssT1I CCWWGG 2 cut(s) 43, 963
Bst2UI CCWGG 8 cut(s) 133, 350, 762, 908, 1050, 1263, 1272, 2475
Bst4CI ACNGT 9 cut(s) 127, 554, 695, 1072, 1152, 1555, 1759, 1916, 2500
Bst6I CTCTTC 3 cut(s) 160, 1288, 1855
BstAUI TGTACA 1 cut(s) 1309
BstC8I GCNNGC 7 cut(s) 16, 214, 813, 938, 1205, 1344, 2321
BstDEI CTNAG 8 cut(s) 98, 684, 1035, 1674, 2001, 2079, 2427, 2487
BstDSI CCRYGG 1 cut(s) 43
BstENI CCTNNNNNAGG 2 cut(s) 1038, 1430
BstF5I GGATG 4 cut(s) 325, 505, 1941, 2128
BstFNI CGCG 2 cut(s) 855, 1332
BstHHI GCGC 2 cut(s) 855, 1332
BstKTI GATC 7 cut(s) 193, 419, 596, 629, 1195, 1792, 1995
BstMAI GTCTC 4 cut(s) 963, 1116, 1282, 2489
BstMBI GATC 7 cut(s) 190, 416, 593, 626, 1192, 1789, 1992
BstMCI CGRYCG 1 cut(s) 1572
BstNI CCWGG 8 cut(s) 133, 350, 762, 908, 1050, 1263, 1272, 2475
BstNSI RCATGY 2 cut(s) 216, 1346
BstSCI CCNGG 8 cut(s) 131, 348, 760, 906, 1048, 1261, 1270, 2473
BstSFI CTRYAG 4 cut(s) 744, 1325, 2039, 2136
BstSLI GKGCMC 1 cut(s) 85
BstUI CGCG 2 cut(s) 855, 1332
BstV1I GCAGC 3 cut(s) 934, 1552, 2242
BstV2I GAAGAC 1 cut(s) 2574
BstX2I RGATCY 1 cut(s) 593
BstXI CCANNNNNNTGG 1 cut(s) 712
BstYI RGATCY 1 cut(s) 593
BstZI CGGCCG 1 cut(s) 1569
Bsu36I CCTNAGG 1 cut(s) 2001
BsuRI GGCC 7 cut(s) 18, 83, 152, 1053, 1080, 1422, 1571
BtgI CCRYGG 1 cut(s) 43
BtgZI GCGATG 1 cut(s) 2375
BtsCI GGATG 4 cut(s) 325, 505, 1941, 2128
BtsI GCAGTG 3 cut(s) 504, 1773, 2401
BtsIMutI CAGTG 9 cut(s) 504, 691, 1375, 1551, 1578, 1773, 2238, 2281, 2401
Cac8I GCNNGC 7 cut(s) 16, 214, 813, 938, 1205, 1344, 2321
CaiI CAGNNNCTG 1 cut(s) 1383
CciI TCATGA 1 cut(s) 1792
CciNI GCGGCCGC 1 cut(s) 1569
CfoI GCGC 2 cut(s) 855, 1332
Cfr13I GGNCC 6 cut(s) 81, 82, 368, 785, 1265, 1474
CseI GACGC 1 cut(s) 1348
CsiI ACCWGGT 1 cut(s) 348
Csp6I GTAC 4 cut(s) 997, 1013, 1310, 1678
CspCI CAANNNNNGTGG 2 cut(s) 2257, 2292
CviQI GTAC 4 cut(s) 997, 1013, 1310, 1678
DdeI CTNAG 8 cut(s) 98, 684, 1035, 1674, 2001, 2079, 2427, 2487
DpnI GATC 7 cut(s) 192, 418, 595, 628, 1194, 1791, 1994
DpnII GATC 7 cut(s) 190, 416, 593, 626, 1192, 1789, 1992
DraI TTTAAA 1 cut(s) 2524
EaeI YGGCCR 5 cut(s) 16, 1051, 1078, 1420, 1569
EagI CGGCCG 1 cut(s) 1569
Eam1104I CTCTTC 3 cut(s) 160, 1288, 1855
EarI CTCTTC 3 cut(s) 160, 1288, 1855
EclXI CGGCCG 1 cut(s) 1569
Eco130I CCWWGG 2 cut(s) 43, 963
Eco24I GRGCYC 3 cut(s) 85, 1162, 2453
Eco32I GATATC 1 cut(s) 2307
Eco47I GGWCC 4 cut(s) 368, 785, 1265, 1474
Eco52I CGGCCG 1 cut(s) 1569
Eco57I CTGAAG 3 cut(s) 638, 1983, 2207
Eco81I CCTNAGG 1 cut(s) 2001
Eco88I CYCGRG 1 cut(s) 657
EcoNI CCTNNNNNAGG 2 cut(s) 1038, 1430
EcoO109I RGGNCCY 1 cut(s) 82
EcoRI GAATTC 1 cut(s) 1591
EcoRII CCWGG 8 cut(s) 131, 348, 760, 906, 1048, 1261, 1270, 2473
EcoRV GATATC 1 cut(s) 2307
EcoT14I CCWWGG 2 cut(s) 43, 963
EcoT22I ATGCAT 5 cut(s) 214, 218, 1303, 1726, 2049
EcoT38I GRGCYC 3 cut(s) 85, 1162, 2453
ErhI CCWWGG 2 cut(s) 43, 963
FaqI GGGAC 4 cut(s) 976, 1460, 2189, 2491
FauI CCCGC 2 cut(s) 47, 711
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 7 cut(s) 150, 948, 1566, 1569, 1572, 1575, 2256
FokI GGATG 4 cut(s) 332, 512, 1948, 2135
FriOI GRGCYC 3 cut(s) 85, 1162, 2453
Fsp4HI GCNGC 7 cut(s) 150, 948, 1566, 1569, 1572, 1575, 2256
FspBI CTAG 5 cut(s) 299, 944, 1197, 1403, 1745
GlaI GCGC 2 cut(s) 854, 1331
GluI GCNGC 7 cut(s) 150, 948, 1566, 1569, 1572, 1575, 2256
GsaI CCCAGC 2 cut(s) 284, 954
GsuI CTGGAG 4 cut(s) 789, 1293, 1564, 2214
HaeIII GGCC 7 cut(s) 18, 83, 152, 1053, 1080, 1422, 1571
HapII CCGG 2 cut(s) 19, 1054
HgaI GACGC 1 cut(s) 1348
HhaI GCGC 2 cut(s) 855, 1332
Hin6I GCGC 2 cut(s) 853, 1330
HinP1I GCGC 2 cut(s) 853, 1330
HincII GTYRAC 3 cut(s) 244, 424, 1086
HindII GTYRAC 3 cut(s) 244, 424, 1086
HindIII AAGCTT 1 cut(s) 1965
HpaII CCGG 2 cut(s) 19, 1054
HphI GGTGA 6 cut(s) 727, 1154, 1904, 1987, 2138, 2615
Hpy166II GTNNAC 7 cut(s) 223, 244, 424, 550, 785, 1086, 1438
Hpy188III TCNNGA 9 cut(s) 657, 768, 1355, 1745, 1793, 1828, 1928, 1961, 2351
Hpy8I GTNNAC 7 cut(s) 223, 244, 424, 550, 785, 1086, 1438
HpyAV CCTTC 6 cut(s) 888, 903, 1663, 1925, 1936, 2102
HpyCH4III ACNGT 9 cut(s) 127, 554, 695, 1072, 1152, 1555, 1759, 1916, 2500
HpyCH4IV ACGT 2 cut(s) 710, 1839
HpyF3I CTNAG 8 cut(s) 98, 684, 1035, 1674, 2001, 2079, 2427, 2487
HpySE526I ACGT 2 cut(s) 710, 1839
HspAI GCGC 2 cut(s) 853, 1330
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 7 cut(s) 190, 416, 593, 626, 1192, 1789, 1992
LmnI GCTCC 3 cut(s) 715, 903, 1006
Lsp1109I GCAGC 3 cut(s) 934, 1552, 2242
LweI GCATC 8 cut(s) 169, 416, 691, 1282, 1288, 1310, 1792, 2034
MabI ACCWGGT 1 cut(s) 348
MaeI CTAG 5 cut(s) 299, 944, 1197, 1403, 1745
MaeII ACGT 2 cut(s) 710, 1839
MalI GATC 7 cut(s) 192, 418, 595, 628, 1194, 1791, 1994
MbiI CCGCTC 1 cut(s) 718
MboI GATC 7 cut(s) 190, 416, 593, 626, 1192, 1789, 1992
MfeI CAATTG 1 cut(s) 1608
MflI RGATCY 1 cut(s) 593
MhlI GDGCHC 4 cut(s) 85, 1162, 2453, 2517
MlsI TGGCCA 2 cut(s) 1080, 1422
MluNI TGGCCA 2 cut(s) 1080, 1422
MlyI GAGTC 9 cut(s) 938, 1177, 1284, 1756, 1793, 2164, 2221, 2373, 2479
MmeI TCCRAC 4 cut(s) 693, 1084, 2192, 2263
Mox20I TGGCCA 2 cut(s) 1080, 1422
Mph1103I ATGCAT 5 cut(s) 214, 218, 1303, 1726, 2049
MroXI GAANNNNTTC 2 cut(s) 2163, 2338
MscI TGGCCA 2 cut(s) 1080, 1422
MseI TTAA 6 cut(s) 858, 1251, 1518, 1751, 1769, 2523
MslI CAYNNNNRTG 2 cut(s) 1797, 2394
Msp20I TGGCCA 2 cut(s) 1080, 1422
MspA1I CMGCKG 1 cut(s) 2370
MspI CCGG 2 cut(s) 19, 1054
MspR9I CCNGG 8 cut(s) 133, 350, 762, 908, 1050, 1263, 1272, 2475
MunI CAATTG 1 cut(s) 1608
Mva1269I GAATGC 1 cut(s) 443
MvaI CCWGG 8 cut(s) 133, 350, 762, 908, 1050, 1263, 1272, 2475
MvnI CGCG 2 cut(s) 855, 1332
NcoI CCATGG 1 cut(s) 43
NdeII GATC 7 cut(s) 190, 416, 593, 626, 1192, 1789, 1992
NlaIV GGNNCC 4 cut(s) 83, 876, 905, 1476
NmuCI GTSAC 5 cut(s) 344, 1370, 1395, 1759, 1978
NotI GCGGCCGC 1 cut(s) 1569
NsiI ATGCAT 5 cut(s) 214, 218, 1303, 1726, 2049
NspI RCATGY 2 cut(s) 216, 1346
PaeI GCATGC 2 cut(s) 216, 1346
PaeR7I CTCGAG 1 cut(s) 657
PagI TCATGA 1 cut(s) 1792
PasI CCCWGGG 1 cut(s) 2474
PctI GAATGC 1 cut(s) 443
PdmI GAANNNNTTC 2 cut(s) 2163, 2338
PfeI GAWTC 7 cut(s) 234, 579, 756, 1045, 1655, 2164, 2584
PflFI GACNNNGTC 1 cut(s) 1127
PflMI CCANNNNNTGG 1 cut(s) 1687
PfoI TCCNGGA 1 cut(s) 1270
PkrI GCNGC 7 cut(s) 151, 949, 1567, 1570, 1573, 1576, 2257
PleI GAGTC 9 cut(s) 937, 1176, 1283, 1756, 1792, 2164, 2221, 2373, 2479
PpsI GAGTC 9 cut(s) 937, 1176, 1283, 1756, 1792, 2164, 2221, 2373, 2479
Psp1406I AACGTT 1 cut(s) 710
Psp6I CCWGG 8 cut(s) 131, 348, 760, 906, 1048, 1261, 1270, 2473
PspFI CCCAGC 2 cut(s) 280, 950
PspGI CCWGG 8 cut(s) 131, 348, 760, 906, 1048, 1261, 1270, 2473
PspN4I GGNNCC 4 cut(s) 83, 876, 905, 1476
PspOMI GGGCCC 1 cut(s) 81
PspPI GGNCC 6 cut(s) 81, 82, 368, 785, 1265, 1474
PstI CTGCAG 1 cut(s) 2043
PstNI CAGNNNCTG 1 cut(s) 1383
PsuI RGATCY 1 cut(s) 593
PsyI GACNNNGTC 1 cut(s) 1127
RsaI GTAC 4 cut(s) 998, 1014, 1311, 1679
RsaNI GTAC 4 cut(s) 997, 1013, 1310, 1678
RseI CAYNNNNRTG 2 cut(s) 1797, 2394
SaqAI TTAA 6 cut(s) 858, 1251, 1518, 1751, 1769, 2523
SatI GCNGC 7 cut(s) 150, 948, 1566, 1569, 1572, 1575, 2256
Sau3AI GATC 7 cut(s) 190, 416, 593, 626, 1192, 1789, 1992
Sau96I GGNCC 6 cut(s) 81, 82, 368, 785, 1265, 1474
ScaI AGTACT 1 cut(s) 998
SchI GAGTC 9 cut(s) 938, 1177, 1284, 1756, 1793, 2164, 2221, 2373, 2479
ScrFI CCNGG 8 cut(s) 133, 350, 762, 908, 1050, 1263, 1272, 2475
SduI GDGCHC 4 cut(s) 85, 1162, 2453, 2517
SexAI ACCWGGT 1 cut(s) 348
SfaNI GCATC 8 cut(s) 169, 416, 691, 1282, 1288, 1310, 1792, 2034
SfcI CTRYAG 4 cut(s) 744, 1325, 2039, 2136
Sfr274I CTCGAG 1 cut(s) 657
SinI GGWCC 4 cut(s) 368, 785, 1265, 1474
SlaI CTCGAG 1 cut(s) 657
SmiMI CAYNNNNRTG 2 cut(s) 1797, 2394
SmlI CTYRAG 5 cut(s) 589, 657, 675, 2492, 2540
SmoI CTYRAG 5 cut(s) 589, 657, 675, 2492, 2540
SphI GCATGC 2 cut(s) 216, 1346
SspMI CTAG 5 cut(s) 299, 944, 1197, 1403, 1745
StyD4I CCNGG 8 cut(s) 131, 348, 760, 906, 1048, 1261, 1270, 2473
StyI CCWWGG 2 cut(s) 43, 963
TaaI ACNGT 9 cut(s) 127, 554, 695, 1072, 1152, 1555, 1759, 1916, 2500
TaiI ACGT 2 cut(s) 713, 1842
TaqI TCGA 5 cut(s) 89, 577, 658, 1765, 2056
TatI WGTACW 2 cut(s) 996, 1309
TauI GCSGC 4 cut(s) 152, 1571, 1574, 1577
TfiI GAWTC 7 cut(s) 234, 579, 756, 1045, 1655, 2164, 2584
Tru1I TTAA 6 cut(s) 858, 1251, 1518, 1751, 1769, 2523
Tru9I TTAA 6 cut(s) 858, 1251, 1518, 1751, 1769, 2523
TscAI CASTG 9 cut(s) 511, 698, 1375, 1558, 1585, 1780, 2238, 2281, 2401
TseFI GTSAC 5 cut(s) 344, 1370, 1395, 1759, 1978
TseI GCWGC 3 cut(s) 947, 1565, 2255
Tsp45I GTSAC 5 cut(s) 344, 1370, 1395, 1759, 1978
TspDTI ATGAA 9 cut(s) 20, 52, 366, 599, 1457, 1604, 1952, 2064, 2316
TspGWI ACGGA 1 cut(s) 332
TspRI CASTG 9 cut(s) 511, 698, 1375, 1558, 1585, 1780, 2238, 2281, 2401
Tth111I GACNNNGTC 1 cut(s) 1127
Van91I CCANNNNNTGG 1 cut(s) 1687
VpaK11BI GGWCC 4 cut(s) 368, 785, 1265, 1474
XagI CCTNNNNNAGG 2 cut(s) 1038, 1430
XapI RAATTY 4 cut(s) 196, 263, 1591, 1903
XbaI TCTAGA 1 cut(s) 1744
XceI RCATGY 2 cut(s) 216, 1346
XhoI CTCGAG 1 cut(s) 657
XmnI GAANNNNTTC 2 cut(s) 2163, 2338
XspI CTAG 5 cut(s) 299, 944, 1197, 1403, 1745
ZrmI AGTACT 1 cut(s) 998
Zsp2I ATGCAT 5 cut(s) 214, 218, 1303, 1726, 2049
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.