RLG00000033768

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006822
Physical Location & Seq
Reverse (-)
31900196 .. 31906651
6456 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033768

Sequence Viewer

Length: 2679 bp
ATGAATGATGCTGGCCGGAATGGTGGTGGTGTTTCCCGCCATGCCAAGACCAACGGCTTCATTCCAAGCTCGTTTCGGGCGCTTTCGAGTTATCTGAGAATTGTTTCTTCTGGGGCTTCAACTGTTGCCAGGTCGGCTGTGTCGGCGGCCTCTTCTATTGCGGAGAGGGATAATGATGCCACCCATGATCAGGTAAACTGGGCTGGATTTGACAAGTTAGAAGGGGAGGGAAATGTCTACCGGAAAGTTCTTCTGCTGGGTTACCGCTCTGGTTTCCAGGTTTGGGATGTTGAAGAAGCAGATAATGTCCGTGACCTGGTTTCCACACATGATGGTCCTATTTCATTTATGCAAATGCTACCTAAACCAATAGCATCAAAGAGATCGGATGACAAGTTTGTTGAAAGCCGTCCATTGCTGGTAGTTTGTGCTGATGGATCAATTTCTGTTGATAATAACATAGAGGATGGCACTGCCCCTCGCAATGGTGTTACTACAAACAGCCATGACAAAGTGAACAGTAGTTTTGTGCCTACTGCTGTTCGGTTCTATTCCTTGAGATCTCAATCCTATGTTCATGTGCTGAAGTTCAGATCAGCTATTTATTCTGTAAAGTGCAGTTCTCGAGTTGTTGCTATTTCTCAAGCAACTCAGATACACTGTTTTGATGCCACAACGTTGGAGCGGGAATATACTATTCTCACCAATCCTATAGTTACGGGATTCCCTGGTTCTGGAGGTATAAGCTGTGGACCTGTTGCAGTAGGCAAGAGATGGCTAGCTTATAGTGGAAGTCCTGTTGCAGTAACCAATTCTGGGCGCGTTAATCCACAACATCTGGCACCTTCCGCTAGTTTTCCTTCAAATGGGAGCCTGGTTGCTCACTATGCAAAAGAGTCAAGCAAGCAACTGGCTGCTGGGATTGCGACCTTGGGAGACATGGGGTATAAGAAGCTGTCCCAGTACTACTCAGAGCTTGTACCTGATAGTATTACTTATCCTCAGTCAGGGAATCCTGGCCGGAAAGCCAATGGAACTGTCAATGGGCAGTCAACAGACACAGATAGTGTTGGAATGGTCATTGTCAGAGACATTGTCAGTAAAGCTGTTATTGCACAGTTCAGGGCTCACCAGAGTCCTATTTCTGCATTATGCTTTGATCCTAGTGGCACGCTTTTAGTGTCTGCTTCGGTTCAGGGGCATAACATCAATGTTTTTAAGATAATGCCTGGATCTCCTGGAGTCTCCTCTTCAACTGATGCTGATGCATCTCATGTACATCTTTACAGGCTACAGCGTGGAATGACGCATGCAATTATTCAGGACATTAGTTTCAGTGATGACAGCAACTGGATTATGGTTAGTTCCTCTAGGGGGACCAGCCATCTGTTTGCTATAAATCCTTGGGGAGGAACTGTTGATATTCCAAATTCTGATGCTAGCTTTAATCCAAAAAATACTGTATCAGGTGTCACAACTAGGTCAGCAGTTCGTTGGCCACCTAATTCAGGTTCGCAAATGCCTAATCAGCAGAGCCTCTGTTCATCGGGTCCCCCAGTTACACTCTCTGTTGTTAGTAGAATAAGAAATGGAAACAATAGCTGGAGAGGCACTGTAACTGGTGCTGCGGCCGCCGCCACTGGCAAGATGAATTCCCTCTCTGGGGCAATTGCTTCCTCTTTCCGTAATTGCAAAGGCAATGATTACCATGTGGATTCCAGCTCTTTGAAGGCTAAGTACCACCTTTTGGTATTTTCTCCATCTGGTTGCATGATACAATATGCATTGCGAATACCAAATGGTCTAGATTTAACAAATGTGACTGGATTAAACACTGCTTATGAGTCAGATCACGAGTGTGATGCAAGATTAGTAGTTGAAGCTATCCAGAAGTGGAATGTATGTCAGAAGCAGAACCGAAGAGAACGGGAGGATAATACTGACATATATGGTGAGAATGGAAATTTAGACAACAATAAGATACATCCTGAAGGGATGAAGAAGGGAAACACGGTATATCCTGAAGCTTGGAGTTCTGTCACAAAAGAAAAGATCACCCCTGAGGAAAAACATCATTTGTATATTTCAGAAGCCGAACTGCAGATGCATGAAACTCGAAGTCCACTATGGGCAAGACCTGAGCTATACTTTCAGTCAATGATTGTGGAAGGTGTGAAGATGGATGGTGAAACTGCTACAGGAGGAGAAATTGAGATTGAAAGGATTCCGACTCGCATGATTGAAGCAAGGTCAAAGGATTTAGTCCCAGTTTTTGACTATCTTCAGACTCCAGTGTTCCAACAAACAAGGGTTGCTTCTGTGAATAGCAATATCAGTGGGCAACTTCTTCAACAGAGGTCTAGGATATCTGAAAAGGGCAGGCTTTCATGCAGAAACAGTTCAAACTCTCTTGATACCATGACTGACAGCGGTGCTGGACTCGCAGAACATCGCAGTGGTAGTGAAGAAACTGGGTGGGGTGTTCCTCAGATGACAATAGGAAGCACGGGCTCTGTAAATAACAATGACAGCCCAGAGACAAAGACTCAGCTTGAGACTGTAAATAGTAGAGAGCACGGCTTTAAAATGGAGGCTCAACTCAAGTTTGTAAATAATGACATAGAAGAAGACATGGGAATGGGGAATCTTTTTGAACAGGGAGGTGATGAGTATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000785 GO:0001952 GO:0001953 GO:0003674 GO:0003682 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0006355 GO:0006357 GO:0006810 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007030 GO:0007162 GO:0007275 GO:0008047 GO:0008092 GO:0008134 GO:0008150 GO:0009605 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010256 GO:0010468 GO:0010556 GO:0010557 GO:0010594 GO:0010595 GO:0010604 GO:0010628 GO:0010632 GO:0010634 GO:0010638 GO:0010698 GO:0010810 GO:0010812 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0019219 GO:0019222 GO:0019899 GO:0030155 GO:0030234 GO:0030334 GO:0030335 GO:0031023 GO:0031252 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031344 GO:0031346 GO:0031667 GO:0031974 GO:0031981 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032878 GO:0032879 GO:0032880 GO:0032956 GO:0032970 GO:0033043 GO:0033157 GO:0034260 GO:0035035 GO:0035148 GO:0035239 GO:0035257 GO:0035295 GO:0035327 GO:0040012 GO:0040017 GO:0042221 GO:0042393 GO:0042594 GO:0043085 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043547 GO:0043627 GO:0044087 GO:0044089 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045111 GO:0045893 GO:0045935 GO:0045944 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048646 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051270 GO:0051272 GO:0051336 GO:0051345 GO:0051346 GO:0051427 GO:0051489 GO:0051491 GO:0051493 GO:0051495 GO:0051716 GO:0051893 GO:0051895 GO:0060255 GO:0060341 GO:0060491 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070887 GO:0071391 GO:0071840 GO:0080090 GO:0090087 GO:0090109 GO:0090316 GO:0090630 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120032 GO:0120034 GO:0120035 GO:1901888 GO:1901889 GO:1902680 GO:1903391 GO:1903392 GO:1903506 GO:1903508 GO:1903827 GO:1903829 GO:1904951 GO:2000112 GO:2000114 GO:2000145 GO:2000147 GO:2000249 GO:2000251 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCAS3 WD40

Protein Analysis

893

Amino Acids

96.67

Weight (kDa)

6.38

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCAS3_WD40 PF21034 63 - 472 1.7e-48 BCAS3, WD40 repeat
PROPPIN PF21032 358 - 467 6.9e-06 PROPPIN
BCAS3 PF12490 614 - 759 1.3e-54 BCAS3 microtubule associated cell migration factor, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 841
AccB7I CCANNNNNTGG 1 cut(s) 1747
AccBSI CCGCTC 2 cut(s) 267, 685
AccI GTMKAC 1 cut(s) 237
AccII CGCG 1 cut(s) 822
AclI AACGTT 1 cut(s) 677
AclWI GGATC 3 cut(s) 445, 1154, 1240
AcoI YGGCCR 4 cut(s) 13, 1018, 1496, 1629
AcsI RAATTY 3 cut(s) 1429, 1651, 1963
AcuI CTGAAG 4 cut(s) 605, 2010, 2043, 2267
AfaI GTAC 4 cut(s) 965, 981, 1278, 1739
AjnI CCWGG 8 cut(s) 128, 276, 315, 727, 873, 1015, 1228, 1237
AleI CACNNNNGTG 1 cut(s) 1857
Alw21I GWGCWC 1 cut(s) 2577
Alw26I GTCTC 5 cut(s) 930, 1083, 1249, 2531, 2549
AlwI GGATC 3 cut(s) 445, 1154, 1240
AlwNI CAGNNNCTG 1 cut(s) 1350
Ama87I CYCGRG 1 cut(s) 624
AoxI GGCC 5 cut(s) 13, 147, 1018, 1496, 1629
ApeKI GCWGC 2 cut(s) 914, 1625
ApoI RAATTY 3 cut(s) 1429, 1651, 1963
Asp700I GAANNNNTTC 3 cut(s) 103, 2223, 2398
AspLEI GCGC 2 cut(s) 82, 822
AspS9I GGNCC 4 cut(s) 335, 752, 1377, 1550
AsuHPI GGTGA 6 cut(s) 694, 1121, 1964, 2047, 2198, 2675
AsuNHI GCTAGC 2 cut(s) 778, 1439
AvaI CYCGRG 1 cut(s) 624
AvaII GGWCC 4 cut(s) 335, 752, 1377, 1550
AxyI CCTNAGG 1 cut(s) 2061
BalI TGGCCA 1 cut(s) 1498
BanI GGYRCC 1 cut(s) 841
BanII GRGCYC 2 cut(s) 1129, 2513
BarI GAAGNNNNNNTAC 2 cut(s) 1721, 1753
BauI CACGAG 1 cut(s) 1853
BbsI GAAGAC 1 cut(s) 2634
Bbv12I GWGCWC 1 cut(s) 2577
BbvI GCAGC 2 cut(s) 901, 1612
BccI CCATC 8 cut(s) 326, 428, 461, 768, 1392, 1768, 2173, 2177
BceAI ACGGC 3 cut(s) 70, 393, 2593
BcgI CGANNNNNNTGC 4 cut(s) 1844, 1878, 2096, 2130
BciT130I CCWGG 8 cut(s) 130, 278, 317, 729, 875, 1017, 1230, 1239
BclI TGATCA 1 cut(s) 187
BcoDI GTCTC 5 cut(s) 930, 1083, 1249, 2531, 2549
BfaI CTAG 8 cut(s) 779, 852, 1164, 1371, 1440, 1479, 1805, 2361
BfmI CTRYAG 4 cut(s) 711, 1292, 2099, 2196
BfoI RGCGCY 1 cut(s) 83
BglI GCCNNNNNGGC 1 cut(s) 134
BglII AGATCT 1 cut(s) 560
BisI GCNGC 6 cut(s) 147, 915, 1626, 1629, 1632, 1635
BlsI GCNGC 6 cut(s) 148, 916, 1627, 1630, 1633, 1636
BmcAI AGTACT 1 cut(s) 965
Bme1390I CCNGG 8 cut(s) 130, 278, 317, 729, 875, 1017, 1230, 1239
Bme18I GGWCC 4 cut(s) 335, 752, 1377, 1550
BmeT110I CYCGRG 1 cut(s) 624
BmgT120I GGNCC 4 cut(s) 335, 752, 1377, 1550
BmiI GGNNCC 5 cut(s) 843, 872, 1378, 1551, 1552
BmrFI CCNGG 8 cut(s) 130, 278, 317, 729, 875, 1017, 1230, 1239
BmrI ACTGGG 5 cut(s) 208, 955, 1550, 2261, 2481
BmsI GCATC 9 cut(s) 166, 383, 658, 1249, 1255, 1277, 1426, 1852, 2094
BmtI GCTAGC 2 cut(s) 782, 1443
BmuI ACTGGG 5 cut(s) 208, 955, 1550, 2261, 2481
BpiI GAAGAC 1 cut(s) 2634
BpmI CTGGAG 4 cut(s) 756, 1260, 1624, 2274
Bpu10I CCTNAGC 1 cut(s) 2139
BpuEI CTTGAG 4 cut(s) 577, 627, 2573, 2585
BsaBI GATNNNNATC 1 cut(s) 565
BsaJI CCNNGG 3 cut(s) 727, 930, 1403
BsaWI WCCGGW 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 1401, 1431
Bse21I CCTNAGG 1 cut(s) 2061
Bse3DI GCAATG 4 cut(s) 413, 490, 1705, 1784
Bse8I GATNNNNATC 1 cut(s) 565
BseBI CCWGG 8 cut(s) 130, 278, 317, 729, 875, 1017, 1230, 1239
BseDI CCNNGG 3 cut(s) 727, 930, 1403
BseGI GGATG 6 cut(s) 292, 394, 472, 1984, 2001, 2188
BseJI GATNNNNATC 1 cut(s) 565
BseMI GCAATG 4 cut(s) 413, 490, 1705, 1784
BseMII CTCAG 8 cut(s) 86, 665, 984, 1016, 2052, 2130, 2501, 2561
BseRI GAGGAG 2 cut(s) 1237, 2217
BseX3I CGGCCG 1 cut(s) 1629
BseXI GCAGC 2 cut(s) 901, 1612
BseYI CCCAGC 2 cut(s) 256, 917
BsgI GTGCAG 1 cut(s) 637
Bsh1236I CGCG 1 cut(s) 822
Bsh1285I CGRYCG 1 cut(s) 1632
BshFI GGCC 5 cut(s) 15, 149, 1020, 1498, 1631
BshNI GGYRCC 1 cut(s) 841
BsiEI CGRYCG 1 cut(s) 1632
BsiHKAI GWGCWC 1 cut(s) 2577
BsiHKCI CYCGRG 1 cut(s) 624
BsiSI CCGG 3 cut(s) 16, 241, 1021
BslFI GGGAC 4 cut(s) 943, 1390, 1536, 2249
BsmAI GTCTC 5 cut(s) 930, 1083, 1249, 2531, 2549
BsmFI GGGAC 4 cut(s) 943, 1390, 1536, 2249
BsnI GGCC 5 cut(s) 15, 149, 1020, 1498, 1631
BsoBI CYCGRG 1 cut(s) 624
Bsp1286I GDGCHC 3 cut(s) 1129, 2513, 2577
Bsp1407I TGTACA 1 cut(s) 1276
Bsp143I GATC 9 cut(s) 187, 383, 437, 560, 593, 1159, 1232, 1849, 2052
BspANI GGCC 5 cut(s) 15, 149, 1020, 1498, 1631
BspCNI CTCAG 8 cut(s) 87, 664, 983, 1015, 2053, 2131, 2500, 2560
BspFNI CGCG 1 cut(s) 822
BspLI GGNNCC 5 cut(s) 843, 872, 1378, 1551, 1552
BspMAI CTGCAG 1 cut(s) 2103
BspOI GCTAGC 2 cut(s) 782, 1443
BspPI GGATC 3 cut(s) 445, 1154, 1240
BspT107I GGYRCC 1 cut(s) 841
BsrBI CCGCTC 2 cut(s) 267, 685
BsrDI GCAATG 4 cut(s) 413, 490, 1705, 1784
BsrGI TGTACA 1 cut(s) 1276
BssECI CCNNGG 3 cut(s) 727, 930, 1403
BssMI GATC 9 cut(s) 187, 383, 437, 560, 593, 1159, 1232, 1849, 2052
BssSI CACGAG 1 cut(s) 1853
BssT1I CCWWGG 2 cut(s) 930, 1403
Bst2BI CACGAG 1 cut(s) 1853
Bst2UI CCWGG 8 cut(s) 130, 278, 317, 729, 875, 1017, 1230, 1239
Bst6I CTCTTC 3 cut(s) 157, 1255, 1915
BstAUI TGTACA 1 cut(s) 1276
BstC8I GCNNGC 7 cut(s) 13, 780, 905, 1172, 1311, 1441, 2381
BstDEI CTNAG 9 cut(s) 95, 651, 970, 1002, 1734, 2061, 2139, 2487, 2547
BstEII GGTNACC 1 cut(s) 260
BstENI CCTNNNNNAGG 3 cut(s) 1005, 1407, 1506
BstF5I GGATG 6 cut(s) 292, 394, 472, 1984, 2001, 2188
BstFNI CGCG 1 cut(s) 822
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 2 cut(s) 82, 822
BstKTI GATC 9 cut(s) 190, 386, 440, 563, 596, 1162, 1235, 1852, 2055
BstMAI GTCTC 5 cut(s) 930, 1083, 1249, 2531, 2549
BstMBI GATC 9 cut(s) 187, 383, 437, 560, 593, 1159, 1232, 1849, 2052
BstMCI CGRYCG 1 cut(s) 1632
BstNI CCWGG 8 cut(s) 130, 278, 317, 729, 875, 1017, 1230, 1239
BstNSI RCATGY 1 cut(s) 1313
BstPI GGTNACC 1 cut(s) 260
BstSCI CCNGG 8 cut(s) 128, 276, 315, 727, 873, 1015, 1228, 1237
BstSFI CTRYAG 4 cut(s) 711, 1292, 2099, 2196
BstUI CGCG 1 cut(s) 822
BstV1I GCAGC 2 cut(s) 901, 1612
BstV2I GAAGAC 1 cut(s) 2634
BstX2I RGATCY 2 cut(s) 560, 1232
BstXI CCANNNNNNTGG 1 cut(s) 679
BstYI RGATCY 2 cut(s) 560, 1232
BstZI CGGCCG 1 cut(s) 1629
Bsu36I CCTNAGG 1 cut(s) 2061
BsuRI GGCC 5 cut(s) 15, 149, 1020, 1498, 1631
BtgZI GCGATG 1 cut(s) 2435
BtsCI GGATG 6 cut(s) 292, 394, 472, 1984, 2001, 2188
BtsI GCAGTG 3 cut(s) 471, 1833, 2461
BtsIMutI CAGTG 9 cut(s) 471, 658, 1342, 1611, 1638, 1833, 2298, 2341, 2461
Cac8I GCNNGC 7 cut(s) 13, 780, 905, 1172, 1311, 1441, 2381
CaiI CAGNNNCTG 1 cut(s) 1350
CciNI GCGGCCGC 1 cut(s) 1629
CfoI GCGC 2 cut(s) 82, 822
Cfr13I GGNCC 4 cut(s) 335, 752, 1377, 1550
CseI GACGC 1 cut(s) 1315
CsiI ACCWGGT 1 cut(s) 315
Csp6I GTAC 4 cut(s) 964, 980, 1277, 1738
CspCI CAANNNNNGTGG 4 cut(s) 2145, 2180, 2317, 2352
CviQI GTAC 4 cut(s) 964, 980, 1277, 1738
DdeI CTNAG 9 cut(s) 95, 651, 970, 1002, 1734, 2061, 2139, 2487, 2547
DpnI GATC 9 cut(s) 189, 385, 439, 562, 595, 1161, 1234, 1851, 2054
DpnII GATC 9 cut(s) 187, 383, 437, 560, 593, 1159, 1232, 1849, 2052
DraI TTTAAA 1 cut(s) 2584
EaeI YGGCCR 4 cut(s) 13, 1018, 1496, 1629
EagI CGGCCG 1 cut(s) 1629
Eam1104I CTCTTC 3 cut(s) 157, 1255, 1915
EarI CTCTTC 3 cut(s) 157, 1255, 1915
EclXI CGGCCG 1 cut(s) 1629
Eco130I CCWWGG 2 cut(s) 930, 1403
Eco24I GRGCYC 2 cut(s) 1129, 2513
Eco32I GATATC 1 cut(s) 2367
Eco47I GGWCC 4 cut(s) 335, 752, 1377, 1550
Eco52I CGGCCG 1 cut(s) 1629
Eco57I CTGAAG 4 cut(s) 605, 2010, 2043, 2267
Eco81I CCTNAGG 1 cut(s) 2061
Eco88I CYCGRG 1 cut(s) 624
Eco91I GGTNACC 1 cut(s) 260
EcoNI CCTNNNNNAGG 3 cut(s) 1005, 1407, 1506
EcoO109I RGGNCCY 1 cut(s) 1550
EcoO65I GGTNACC 1 cut(s) 260
EcoRI GAATTC 1 cut(s) 1651
EcoRII CCWGG 8 cut(s) 128, 276, 315, 727, 873, 1015, 1228, 1237
EcoRV GATATC 1 cut(s) 2367
EcoT14I CCWWGG 2 cut(s) 930, 1403
EcoT22I ATGCAT 3 cut(s) 1270, 1786, 2109
EcoT38I GRGCYC 2 cut(s) 1129, 2513
ErhI CCWWGG 2 cut(s) 930, 1403
FalI AAGNNNNNCTT 2 cut(s) 2299, 2331
FaqI GGGAC 4 cut(s) 943, 1390, 1536, 2249
FauI CCCGC 2 cut(s) 44, 678
FbaI TGATCA 1 cut(s) 187
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 6 cut(s) 147, 915, 1626, 1629, 1632, 1635
FokI GGATG 6 cut(s) 299, 401, 479, 1971, 2008, 2195
FriOI GRGCYC 2 cut(s) 1129, 2513
Fsp4HI GCNGC 6 cut(s) 147, 915, 1626, 1629, 1632, 1635
FspBI CTAG 8 cut(s) 779, 852, 1164, 1371, 1440, 1479, 1805, 2361
GlaI GCGC 2 cut(s) 81, 821
GluI GCNGC 6 cut(s) 147, 915, 1626, 1629, 1632, 1635
GsaI CCCAGC 2 cut(s) 260, 921
GsuI CTGGAG 4 cut(s) 756, 1260, 1624, 2274
HaeII RGCGCY 1 cut(s) 83
HaeIII GGCC 5 cut(s) 15, 149, 1020, 1498, 1631
HapII CCGG 3 cut(s) 16, 241, 1021
HgaI GACGC 1 cut(s) 1315
HhaI GCGC 2 cut(s) 82, 822
Hin6I GCGC 2 cut(s) 80, 820
HinP1I GCGC 2 cut(s) 80, 820
HincII GTYRAC 1 cut(s) 1053
HindII GTYRAC 1 cut(s) 1053
HindIII AAGCTT 1 cut(s) 2025
HpaII CCGG 3 cut(s) 16, 241, 1021
HphI GGTGA 6 cut(s) 694, 1121, 1964, 2047, 2198, 2675
Hpy166II GTNNAC 6 cut(s) 196, 238, 517, 752, 1053, 2123
Hpy188III TCNNGA 9 cut(s) 624, 735, 1322, 1805, 1853, 1888, 1988, 2021, 2411
Hpy8I GTNNAC 6 cut(s) 196, 238, 517, 752, 1053, 2123
HpyAV CCTTC 7 cut(s) 215, 855, 870, 1723, 1985, 1996, 2162
HpyCH4IV ACGT 1 cut(s) 677
HpyF3I CTNAG 9 cut(s) 95, 651, 970, 1002, 1734, 2061, 2139, 2487, 2547
HpySE526I ACGT 1 cut(s) 677
HspAI GCGC 2 cut(s) 80, 820
KflI GGGWCCC 1 cut(s) 1550
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 9 cut(s) 187, 383, 437, 560, 593, 1159, 1232, 1849, 2052
LmnI GCTCC 2 cut(s) 682, 870
Lsp1109I GCAGC 2 cut(s) 901, 1612
LweI GCATC 9 cut(s) 166, 383, 658, 1249, 1255, 1277, 1426, 1852, 2094
MabI ACCWGGT 1 cut(s) 315
MaeI CTAG 8 cut(s) 779, 852, 1164, 1371, 1440, 1479, 1805, 2361
MaeII ACGT 1 cut(s) 677
MalI GATC 9 cut(s) 189, 385, 439, 562, 595, 1161, 1234, 1851, 2054
MbiI CCGCTC 2 cut(s) 267, 685
MboI GATC 9 cut(s) 187, 383, 437, 560, 593, 1159, 1232, 1849, 2052
MfeI CAATTG 1 cut(s) 1668
MflI RGATCY 2 cut(s) 560, 1232
MhlI GDGCHC 3 cut(s) 1129, 2513, 2577
MlsI TGGCCA 1 cut(s) 1498
MluNI TGGCCA 1 cut(s) 1498
MlyI GAGTC 8 cut(s) 905, 1144, 1251, 1853, 2224, 2281, 2433, 2539
MmeI TCCRAC 4 cut(s) 660, 1051, 2252, 2323
Mox20I TGGCCA 1 cut(s) 1498
Mph1103I ATGCAT 3 cut(s) 1270, 1786, 2109
MroXI GAANNNNTTC 3 cut(s) 103, 2223, 2398
MscI TGGCCA 1 cut(s) 1498
MseI TTAA 6 cut(s) 825, 1218, 1446, 1811, 1829, 2583
MslI CAYNNNNRTG 3 cut(s) 1857, 2454, 2636
Msp20I TGGCCA 1 cut(s) 1498
MspA1I CMGCKG 1 cut(s) 2430
MspI CCGG 3 cut(s) 16, 241, 1021
MspR9I CCNGG 8 cut(s) 130, 278, 317, 729, 875, 1017, 1230, 1239
MunI CAATTG 1 cut(s) 1668
MvaI CCWGG 8 cut(s) 130, 278, 317, 729, 875, 1017, 1230, 1239
MvnI CGCG 1 cut(s) 822
NdeII GATC 9 cut(s) 187, 383, 437, 560, 593, 1159, 1232, 1849, 2052
NheI GCTAGC 2 cut(s) 778, 1439
NlaIV GGNNCC 5 cut(s) 843, 872, 1378, 1551, 1552
NmuCI GTSAC 4 cut(s) 311, 1471, 1819, 2038
NotI GCGGCCGC 1 cut(s) 1629
NsiI ATGCAT 3 cut(s) 1270, 1786, 2109
NspI RCATGY 1 cut(s) 1313
OliI CACNNNNGTG 1 cut(s) 1857
PaeI GCATGC 1 cut(s) 1313
PaeR7I CTCGAG 1 cut(s) 624
PdmI GAANNNNTTC 3 cut(s) 103, 2223, 2398
PfeI GAWTC 5 cut(s) 723, 1012, 1715, 2224, 2644
PflFI GACNNNGTC 1 cut(s) 1094
PflMI CCANNNNNTGG 1 cut(s) 1747
PfoI TCCNGGA 1 cut(s) 1237
PkrI GCNGC 6 cut(s) 148, 916, 1627, 1630, 1633, 1636
PleI GAGTC 8 cut(s) 904, 1143, 1250, 1852, 2224, 2281, 2433, 2539
PpsI GAGTC 8 cut(s) 904, 1143, 1250, 1852, 2224, 2281, 2433, 2539
PpuMI RGGWCCY 1 cut(s) 1550
Psp1406I AACGTT 1 cut(s) 677
Psp5II RGGWCCY 1 cut(s) 1550
Psp6I CCWGG 8 cut(s) 128, 276, 315, 727, 873, 1015, 1228, 1237
PspEI GGTNACC 1 cut(s) 260
PspFI CCCAGC 2 cut(s) 256, 917
PspGI CCWGG 8 cut(s) 128, 276, 315, 727, 873, 1015, 1228, 1237
PspN4I GGNNCC 5 cut(s) 843, 872, 1378, 1551, 1552
PspPI GGNCC 4 cut(s) 335, 752, 1377, 1550
PspPPI RGGWCCY 1 cut(s) 1550
PstI CTGCAG 1 cut(s) 2103
PstNI CAGNNNCTG 1 cut(s) 1350
PsuI RGATCY 2 cut(s) 560, 1232
PsyI GACNNNGTC 1 cut(s) 1094
RsaI GTAC 4 cut(s) 965, 981, 1278, 1739
RsaNI GTAC 4 cut(s) 964, 980, 1277, 1738
RseI CAYNNNNRTG 3 cut(s) 1857, 2454, 2636
SaqAI TTAA 6 cut(s) 825, 1218, 1446, 1811, 1829, 2583
SatI GCNGC 6 cut(s) 147, 915, 1626, 1629, 1632, 1635
Sau3AI GATC 9 cut(s) 187, 383, 437, 560, 593, 1159, 1232, 1849, 2052
Sau96I GGNCC 4 cut(s) 335, 752, 1377, 1550
ScaI AGTACT 1 cut(s) 965
SchI GAGTC 8 cut(s) 905, 1144, 1251, 1853, 2224, 2281, 2433, 2539
ScrFI CCNGG 8 cut(s) 130, 278, 317, 729, 875, 1017, 1230, 1239
SduI GDGCHC 3 cut(s) 1129, 2513, 2577
SexAI ACCWGGT 1 cut(s) 315
SfaNI GCATC 9 cut(s) 166, 383, 658, 1249, 1255, 1277, 1426, 1852, 2094
SfcI CTRYAG 4 cut(s) 711, 1292, 2099, 2196
Sfr274I CTCGAG 1 cut(s) 624
SinI GGWCC 4 cut(s) 335, 752, 1377, 1550
SlaI CTCGAG 1 cut(s) 624
SmiMI CAYNNNNRTG 3 cut(s) 1857, 2454, 2636
SmlI CTYRAG 5 cut(s) 556, 624, 642, 2552, 2600
SmoI CTYRAG 5 cut(s) 556, 624, 642, 2552, 2600
SphI GCATGC 1 cut(s) 1313
SspMI CTAG 8 cut(s) 779, 852, 1164, 1371, 1440, 1479, 1805, 2361
StyD4I CCNGG 8 cut(s) 128, 276, 315, 727, 873, 1015, 1228, 1237
StyI CCWWGG 2 cut(s) 930, 1403
TaiI ACGT 1 cut(s) 680
TaqI TCGA 3 cut(s) 86, 625, 2116
TatI WGTACW 2 cut(s) 963, 1276
TauI GCSGC 4 cut(s) 149, 1631, 1634, 1637
TfiI GAWTC 5 cut(s) 723, 1012, 1715, 2224, 2644
Tru1I TTAA 6 cut(s) 825, 1218, 1446, 1811, 1829, 2583
Tru9I TTAA 6 cut(s) 825, 1218, 1446, 1811, 1829, 2583
TscAI CASTG 9 cut(s) 478, 665, 1342, 1618, 1645, 1840, 2298, 2341, 2461
TseFI GTSAC 4 cut(s) 311, 1471, 1819, 2038
TseI GCWGC 2 cut(s) 914, 1625
Tsp45I GTSAC 4 cut(s) 311, 1471, 1819, 2038
TspDTI ATGAA 9 cut(s) 17, 49, 333, 566, 1533, 1664, 2012, 2124, 2376
TspGWI ACGGA 2 cut(s) 299, 1673
TspRI CASTG 9 cut(s) 478, 665, 1342, 1618, 1645, 1840, 2298, 2341, 2461
Tth111I GACNNNGTC 1 cut(s) 1094
Van91I CCANNNNNTGG 1 cut(s) 1747
VpaK11BI GGWCC 4 cut(s) 335, 752, 1377, 1550
XagI CCTNNNNNAGG 3 cut(s) 1005, 1407, 1506
XapI RAATTY 3 cut(s) 1429, 1651, 1963
XbaI TCTAGA 1 cut(s) 1804
XceI RCATGY 1 cut(s) 1313
XhoI CTCGAG 1 cut(s) 624
XmiI GTMKAC 1 cut(s) 237
XmnI GAANNNNTTC 3 cut(s) 103, 2223, 2398
XspI CTAG 8 cut(s) 779, 852, 1164, 1371, 1440, 1479, 1805, 2361
ZrmI AGTACT 1 cut(s) 965
Zsp2I ATGCAT 3 cut(s) 1270, 1786, 2109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.