FvH4_3g21770

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006822
Physical Location & Seq
Reverse (-)
14807216 .. 14815149
7934 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g21770.t1

Sequence Viewer

Length: 2688 bp
ATGATGAATGATGGTGGGCGTAATGGTGGTGGTGTTTCCCGCCATGGCAAGGCTAATGGTTTCATTCCAAGCTCGTTTCGGGCCCTTTCCAGTTATCTGAGGATTGTTTCTTCTGGGGCTTCTACTGTTGCCAGGTCGGCGGTGTCGGCGGCTTCTTCTATTGTGGAGAGGGATGAGGATGCTAACCATGATCAGGTAAACTGGGCTGGATTTGACAAGTTAGAAGGGGAGGGAAATGTCTACCGGAAAGTTCTTCTGCTGGGTTACCGCTCTGGTTTCCAGGTTTGGGATGTTGAAGAAGCAGATAATGTCCGTGACCTAGTTTCCACACATGATGGTCCTATTTCATTTATGCAAATGCTACCTAAACCAATAGCATCAAAGAGATCAGATGACAAGTTTGCAGAAAGCCGTCCGTTGCTGGTAGTTTGTGCTGATGGGTCAGTTTCCATTGATAATAACATGGAGGATGGGACTGCCCCTCGAAATGGTATTAATACAAACAGCCATGACAAAGTGAACAGTAGTTTTGTGCCTACATCTGTTCGGTTCTATTCCTTGAGATCTCAATCCTATGTTCATGTTCTGAAGTTCAGATCAGCTGTTTTTTCTGTAAAGTGCAGTTCTCGAGTTGTTGCTGTTTCTCAAGCAACTCAGATACACTGTTTTGATGCCACAACGTTAGAGCGGGAATATACTATTCTTACCAATCCTATAGTTACGGGATTCCCTGGTTCTGGAGGTATAAGTTGTGGACCTGTTGCAGTAGGCAAGAGATGGCTAGCTTATAGTGGAAGTCCTGTTGCAGTAACAAATTCTGGGCGCGTTAATCCACAACATCTGGCACCTTCCGCTAGCTTTCCTTCAAATGGGAGCCTGGTTGCTCACTATGCAAAAGAGTCAAGCAAGCAACTAGCTGCTGGCATTGCGACATTGGGAGACATGGGGTATAAGAAGCTGTCCCGGTACTACTCGGAGCTTGTACCTGATAGTATCACTTATCCTCAGTCAGGGAATCCTGGTCGGAAAGCCAATGGAACTGTCAACAGCCAGTCAACAGACACAGATTCTGTTGGAATGGTCATTGTCAGAGATATTGTCAGTAAAGCTGTTATTGCACAGTTCAGGGCTCACCAGAGTCCTATTTCTGCATTATGCTTTGATCCTAGTGGTACGCTTTTAGTGTCTGCTTCGGTTCAGGGGCATAACATCAATGTTTTTAAGATAATGCCTGGACCTCCTGGAGTCTCCTCTTCAACTGATGCTGATGCATCTCATGTACATCTTTACAGGCTACAACGCGGAATGACAAATGCAATTATTCAGGACATTAGTTTCAGTGATGACAGCAGCTGGATTATGGTTAGCTCGTCTAGGGGCACTAGCCATCTGTTTGCTATAAATCCTTGGGGAGGACCTGTTGATATTCCAAGTTCTGATGCTAGCTTCAATCCAATAAATACTGTATCAGGTGTCACAACTAGAGCGGCAGTTCGTTGGCCACCTAATTCAGGTTTGCAAATGCCTCATCAGCAGAGCCTCTGTTCATCTGGTCCCCCAGTTACACTTTCTGTTGTTAGTAGAATAAGAAATGGAAACAATAGTTGGAGAGGCACTGTAACTGGTGCTGCGGCGGCTGCCACTGGCAAGATGAATTCCCTCTCTGGGGCAATTGCTTCCTCTTTTCATAATTCCAAAGGCAATGATTACCATGTTGTTTCCAGCGCTTTGAAGGCGAAGTACCACCTTTTGGTCTTTTCTCCATCTGGTTGCATGATACAATATGCATTGCGAATACCAAATGGTCTAGATTTAACAACTGTGACTGGATTAAACACTGCTGCTTATGAGTCAGATCACGAGTCTGATGGAAGATTAGTGGTTGAAGCAATCCAGAAGTGGAACGTATGTCAGAAGCAGAACCGAAGAGAACACGAGGATAGTACTGACATATATGGTGAGAATAGAAATATAGACAGCAATAAGATATATCCTGAAGAAATGAAGAAGGGAAACACCGTATATCCTGAAGCTTGGAGTTCTATCACAAAAGAAAAGATCACCCCTGAGGAAAAACATCATTTGTATATTTCAGAAGCTGAACTACTGCAGATGCATGAAACTCGAAGTCCACTATGGGCAAGACCTGAGCTATACTTTCAGTCGATGATTGTGGAAGGTGTGAAGATGGATGGTGAAACTGCTGCTGGAGGAGAAATTGAGATTGAAAGGATTCCGACTCGCATGATTGAAGCAAGGTCAAAGGATTTAGTCCCAGTTTTTGACTATCTTCAGACTCCTGTGTTCCAACCAACAAGGGTTGCTGCTGTGAATAGCAATATCAGTGGGAAACTTATTCAACAGAGGTCTGGGATACCTGAAAATGACAGGCTTTCATGCAGAAGCAGTTCAAACTCTCTCGATACCATGACCCACAGTGGGGCTGGACTCACAGAACACTGCACTGGTAGTGAAGAAACTGGGTGGGGTGTTCCTCAGATGACAATAGGAAGCAAGGGCTCTGTAAATAACTATGACAGCCCAGAGACAAAGACTCAGCTTGAGACTGTAAATAGTAGAGAGCACAGCTTTAAAATGGAGGCTCAACTCAAGTTTGTAAATAATGACATAGAAGAAGACATGGGAATGGGGAATCTTTTTGAACAGGGAGGTGATGAGTATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000785 GO:0001952 GO:0001953 GO:0003674 GO:0003682 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0006355 GO:0006357 GO:0006810 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007030 GO:0007162 GO:0007275 GO:0008047 GO:0008092 GO:0008134 GO:0008150 GO:0009605 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010256 GO:0010468 GO:0010556 GO:0010557 GO:0010594 GO:0010595 GO:0010604 GO:0010628 GO:0010632 GO:0010634 GO:0010638 GO:0010698 GO:0010810 GO:0010812 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0019219 GO:0019222 GO:0019899 GO:0030155 GO:0030234 GO:0030334 GO:0030335 GO:0031023 GO:0031252 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031344 GO:0031346 GO:0031667 GO:0031974 GO:0031981 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032878 GO:0032879 GO:0032880 GO:0032956 GO:0032970 GO:0033043 GO:0033157 GO:0034260 GO:0035035 GO:0035148 GO:0035239 GO:0035257 GO:0035295 GO:0035327 GO:0040012 GO:0040017 GO:0042221 GO:0042393 GO:0042594 GO:0043085 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043547 GO:0043627 GO:0044087 GO:0044089 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045111 GO:0045893 GO:0045935 GO:0045944 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048646 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051270 GO:0051272 GO:0051336 GO:0051345 GO:0051346 GO:0051427 GO:0051489 GO:0051491 GO:0051493 GO:0051495 GO:0051716 GO:0051893 GO:0051895 GO:0060255 GO:0060341 GO:0060491 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070887 GO:0071391 GO:0071840 GO:0080090 GO:0090087 GO:0090109 GO:0090316 GO:0090630 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120032 GO:0120034 GO:0120035 GO:1901888 GO:1901889 GO:1902680 GO:1903391 GO:1903392 GO:1903506 GO:1903508 GO:1903827 GO:1903829 GO:1904951 GO:2000112 GO:2000114 GO:2000145 GO:2000147 GO:2000249 GO:2000251 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCAS3 WD40

Protein Analysis

896

Amino Acids

96.98

Weight (kDa)

6.22

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCAS3_WD40 PF21034 66 - 473 4e-49 BCAS3, WD40 repeat
BCAS3 PF12490 616 - 762 5.9e-53 BCAS3 microtubule associated cell migration factor, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 844
AccB7I CCANNNNNTGG 1 cut(s) 1750
AccBSI CCGCTC 3 cut(s) 270, 688, 1487
AccI GTMKAC 1 cut(s) 240
AccII CGCG 2 cut(s) 825, 1302
AclI AACGTT 1 cut(s) 680
AclWI GGATC 1 cut(s) 1157
AcoI YGGCCR 1 cut(s) 1499
AcsI RAATTY 2 cut(s) 814, 1654
AcuI CTGAAG 4 cut(s) 608, 2016, 2049, 2276
AfaI GTAC 6 cut(s) 968, 984, 1174, 1281, 1742, 1945
AfeI AGCGCT 1 cut(s) 1726
AjnI CCWGG 7 cut(s) 131, 279, 730, 876, 1018, 1231, 1240
AjuI GAANNNNNNNTTGG 2 cut(s) 1588, 1620
Alw21I GWGCWC 1 cut(s) 2586
Alw26I GTCTC 4 cut(s) 933, 1252, 2540, 2558
AlwI GGATC 1 cut(s) 1157
AlwNI CAGNNNCTG 3 cut(s) 1070, 1353, 2099
Ama87I CYCGRG 1 cut(s) 627
Aor51HI AGCGCT 1 cut(s) 1726
AoxI GGCC 2 cut(s) 81, 1499
ApaI GGGCCC 1 cut(s) 85
ApeKI GCWGC 7 cut(s) 917, 1350, 1628, 1637, 1841, 2204, 2324
ApoI RAATTY 2 cut(s) 814, 1654
AseI ATTAAT 1 cut(s) 495
Asp700I GAANNNNTTC 2 cut(s) 2232, 2407
AspLEI GCGC 2 cut(s) 825, 1727
AspS9I GGNCC 7 cut(s) 81, 82, 338, 755, 1235, 1415, 1553
AsuC2I CCSGG 1 cut(s) 964
AsuHPI GGTGA 5 cut(s) 1124, 1970, 2053, 2207, 2684
AsuNHI GCTAGC 3 cut(s) 781, 854, 1442
AvaI CYCGRG 1 cut(s) 627
AvaII GGWCC 5 cut(s) 338, 755, 1235, 1415, 1553
AxyI CCTNAGG 1 cut(s) 2067
BaeGI GKGCMC 2 cut(s) 85, 1382
BalI TGGCCA 1 cut(s) 1501
BanI GGYRCC 1 cut(s) 844
BanII GRGCYC 3 cut(s) 85, 1132, 2522
BarI GAAGNNNNNNTAC 4 cut(s) 1724, 1756, 2088, 2120
BauI CACGAG 2 cut(s) 1859, 1934
BbsI GAAGAC 1 cut(s) 2643
Bbv12I GWGCWC 1 cut(s) 2586
BbvI GCAGC 7 cut(s) 904, 1362, 1615, 1624, 1828, 2191, 2311
BceAI ACGGC 1 cut(s) 396
BcgI CGANNNNNNTGC 2 cut(s) 2105, 2139
BciT130I CCWGG 7 cut(s) 133, 281, 732, 878, 1020, 1233, 1242
BciVI GTATCC 1 cut(s) 2367
BclI TGATCA 1 cut(s) 190
BcnI CCSGG 1 cut(s) 964
BcoDI GTCTC 4 cut(s) 933, 1252, 2540, 2558
BfmI CTRYAG 2 cut(s) 714, 2108
BfoI RGCGCY 1 cut(s) 1728
BfuI GTATCC 1 cut(s) 2367
BglI GCCNNNNNGGC 1 cut(s) 137
BglII AGATCT 1 cut(s) 563
BmcAI AGTACT 1 cut(s) 1945
Bme1390I CCNGG 8 cut(s) 133, 281, 732, 878, 964, 1020, 1233, 1242
Bme18I GGWCC 5 cut(s) 338, 755, 1235, 1415, 1553
BmeT110I CYCGRG 1 cut(s) 627
BmgT120I GGNCC 7 cut(s) 81, 82, 338, 755, 1235, 1415, 1553
BmiI GGNNCC 4 cut(s) 83, 846, 875, 1555
BmrFI CCNGG 8 cut(s) 133, 281, 732, 878, 964, 1020, 1233, 1242
BmrI ACTGGG 4 cut(s) 211, 1553, 2270, 2490
BmsI GCATC 8 cut(s) 169, 386, 661, 1252, 1258, 1280, 1429, 2103
BmtI GCTAGC 3 cut(s) 785, 858, 1446
BmuI ACTGGG 4 cut(s) 211, 1553, 2270, 2490
BpiI GAAGAC 1 cut(s) 2643
BpmI CTGGAG 3 cut(s) 759, 1263, 2229
Bpu10I CCTNAGC 1 cut(s) 2148
BpuEI CTTGAG 4 cut(s) 580, 630, 2582, 2594
BpuMI CCSGG 1 cut(s) 964
BsaBI GATNNNNATC 1 cut(s) 568
BsaJI CCNNGG 3 cut(s) 43, 730, 1406
BsaWI WCCGGW 1 cut(s) 243
BsaXI ACNNNNNCTCC 2 cut(s) 1404, 1434
Bse21I CCTNAGG 1 cut(s) 2067
Bse3DI GCAATG 3 cut(s) 924, 1708, 1787
Bse8I GATNNNNATC 1 cut(s) 568
BseBI CCWGG 7 cut(s) 133, 281, 732, 878, 1020, 1233, 1242
BseDI CCNNGG 3 cut(s) 43, 730, 1406
BseGI GGATG 5 cut(s) 178, 184, 295, 475, 2197
BseJI GATNNNNATC 1 cut(s) 568
BseMI GCAATG 3 cut(s) 924, 1708, 1787
BseMII CTCAG 7 cut(s) 89, 668, 1019, 2058, 2139, 2510, 2570
BseRI GAGGAG 2 cut(s) 1240, 2226
BseSI GKGCMC 2 cut(s) 85, 1382
BseXI GCAGC 7 cut(s) 904, 1362, 1615, 1624, 1828, 2191, 2311
BseYI CCCAGC 1 cut(s) 259
BsgI GTGCAG 2 cut(s) 640, 2446
Bsh1236I CGCG 2 cut(s) 825, 1302
BshFI GGCC 2 cut(s) 83, 1501
BshNI GGYRCC 1 cut(s) 844
BsiHKAI GWGCWC 1 cut(s) 2586
BsiHKCI CYCGRG 1 cut(s) 627
BsiSI CCGG 2 cut(s) 244, 964
BslFI GGGAC 4 cut(s) 487, 946, 1539, 2258
BsmAI GTCTC 4 cut(s) 933, 1252, 2540, 2558
BsmFI GGGAC 4 cut(s) 487, 946, 1539, 2258
BsnI GGCC 2 cut(s) 83, 1501
BsoBI CYCGRG 1 cut(s) 627
Bsp120I GGGCCC 1 cut(s) 81
Bsp1286I GDGCHC 5 cut(s) 85, 1132, 1382, 2522, 2586
Bsp1407I TGTACA 1 cut(s) 1279
Bsp143I GATC 7 cut(s) 190, 386, 563, 596, 1162, 1855, 2058
Bsp19I CCATGG 1 cut(s) 43
BspANI GGCC 2 cut(s) 83, 1501
BspCNI CTCAG 7 cut(s) 90, 667, 1018, 2059, 2140, 2509, 2569
BspFNI CGCG 2 cut(s) 825, 1302
BspLI GGNNCC 4 cut(s) 83, 846, 875, 1555
BspMAI CTGCAG 1 cut(s) 2112
BspOI GCTAGC 3 cut(s) 785, 858, 1446
BspPI GGATC 1 cut(s) 1157
BspT107I GGYRCC 1 cut(s) 844
BsrBI CCGCTC 3 cut(s) 270, 688, 1487
BsrDI GCAATG 3 cut(s) 924, 1708, 1787
BsrGI TGTACA 1 cut(s) 1279
BssECI CCNNGG 3 cut(s) 43, 730, 1406
BssMI GATC 7 cut(s) 190, 386, 563, 596, 1162, 1855, 2058
BssSI CACGAG 2 cut(s) 1859, 1934
BssT1I CCWWGG 2 cut(s) 43, 1406
Bst2BI CACGAG 2 cut(s) 1859, 1934
Bst2UI CCWGG 7 cut(s) 133, 281, 732, 878, 1020, 1233, 1242
Bst6I CTCTTC 2 cut(s) 1258, 1921
BstAUI TGTACA 1 cut(s) 1279
BstC8I GCNNGC 5 cut(s) 783, 856, 908, 922, 1444
BstDEI CTNAG 7 cut(s) 98, 654, 1005, 2067, 2148, 2496, 2556
BstDSI CCRYGG 1 cut(s) 43
BstEII GGTNACC 1 cut(s) 263
BstENI CCTNNNNNAGG 3 cut(s) 1008, 1410, 1509
BstF5I GGATG 5 cut(s) 178, 184, 295, 475, 2197
BstFNI CGCG 2 cut(s) 825, 1302
BstH2I RGCGCY 1 cut(s) 1728
BstHHI GCGC 2 cut(s) 825, 1727
BstKTI GATC 7 cut(s) 193, 389, 566, 599, 1165, 1858, 2061
BstMAI GTCTC 4 cut(s) 933, 1252, 2540, 2558
BstMBI GATC 7 cut(s) 190, 386, 563, 596, 1162, 1855, 2058
BstNI CCWGG 7 cut(s) 133, 281, 732, 878, 1020, 1233, 1242
BstPI GGTNACC 1 cut(s) 263
BstSCI CCNGG 8 cut(s) 131, 279, 730, 876, 962, 1018, 1231, 1240
BstSFI CTRYAG 2 cut(s) 714, 2108
BstSLI GKGCMC 2 cut(s) 85, 1382
BstUI CGCG 2 cut(s) 825, 1302
BstV1I GCAGC 7 cut(s) 904, 1362, 1615, 1624, 1828, 2191, 2311
BstV2I GAAGAC 1 cut(s) 2643
BstX2I RGATCY 1 cut(s) 563
BstYI RGATCY 1 cut(s) 563
Bsu36I CCTNAGG 1 cut(s) 2067
BsuI GTATCC 1 cut(s) 2367
BsuRI GGCC 2 cut(s) 83, 1501
BtgI CCRYGG 1 cut(s) 43
BtsCI GGATG 5 cut(s) 178, 184, 295, 475, 2197
BtsI GCAGTG 2 cut(s) 1836, 2458
BtsIMutI CAGTG 9 cut(s) 661, 1345, 1614, 1641, 1836, 2350, 2443, 2458, 2463
Cac8I GCNNGC 5 cut(s) 783, 856, 908, 922, 1444
CaiI CAGNNNCTG 3 cut(s) 1070, 1353, 2099
CfoI GCGC 2 cut(s) 825, 1727
Cfr13I GGNCC 7 cut(s) 81, 82, 338, 755, 1235, 1415, 1553
Csp6I GTAC 6 cut(s) 967, 983, 1173, 1280, 1741, 1944
CspCI CAANNNNNGTGG 2 cut(s) 2326, 2361
CviQI GTAC 6 cut(s) 967, 983, 1173, 1280, 1741, 1944
DdeI CTNAG 7 cut(s) 98, 654, 1005, 2067, 2148, 2496, 2556
DpnI GATC 7 cut(s) 192, 388, 565, 598, 1164, 1857, 2060
DpnII GATC 7 cut(s) 190, 386, 563, 596, 1162, 1855, 2058
DraI TTTAAA 1 cut(s) 2593
EaeI YGGCCR 1 cut(s) 1499
Eam1104I CTCTTC 2 cut(s) 1258, 1921
EarI CTCTTC 2 cut(s) 1258, 1921
Eco130I CCWWGG 2 cut(s) 43, 1406
Eco24I GRGCYC 3 cut(s) 85, 1132, 2522
Eco47I GGWCC 5 cut(s) 338, 755, 1235, 1415, 1553
Eco47III AGCGCT 1 cut(s) 1726
Eco57I CTGAAG 4 cut(s) 608, 2016, 2049, 2276
Eco81I CCTNAGG 1 cut(s) 2067
Eco88I CYCGRG 1 cut(s) 627
Eco91I GGTNACC 1 cut(s) 263
EcoNI CCTNNNNNAGG 3 cut(s) 1008, 1410, 1509
EcoO109I RGGNCCY 2 cut(s) 82, 1415
EcoO65I GGTNACC 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 1654
EcoRII CCWGG 7 cut(s) 131, 279, 730, 876, 1018, 1231, 1240
EcoT14I CCWWGG 2 cut(s) 43, 1406
EcoT22I ATGCAT 3 cut(s) 1273, 1789, 2118
EcoT38I GRGCYC 3 cut(s) 85, 1132, 2522
ErhI CCWWGG 2 cut(s) 43, 1406
FaqI GGGAC 4 cut(s) 487, 946, 1539, 2258
FauI CCCGC 2 cut(s) 47, 681
FbaI TGATCA 1 cut(s) 190
FblI GTMKAC 1 cut(s) 240
FokI GGATG 5 cut(s) 185, 191, 302, 482, 2204
FriOI GRGCYC 3 cut(s) 85, 1132, 2522
GlaI GCGC 2 cut(s) 824, 1726
GsaI CCCAGC 1 cut(s) 263
GsuI CTGGAG 3 cut(s) 759, 1263, 2229
HaeII RGCGCY 1 cut(s) 1728
HaeIII GGCC 2 cut(s) 83, 1501
HapII CCGG 2 cut(s) 244, 964
HhaI GCGC 2 cut(s) 825, 1727
Hin6I GCGC 2 cut(s) 823, 1725
HinP1I GCGC 2 cut(s) 823, 1725
HincII GTYRAC 2 cut(s) 1045, 1056
HindII GTYRAC 2 cut(s) 1045, 1056
HindIII AAGCTT 1 cut(s) 2031
HpaII CCGG 2 cut(s) 244, 964
HphI GGTGA 5 cut(s) 1124, 1970, 2053, 2207, 2684
Hpy166II GTNNAC 7 cut(s) 199, 241, 520, 755, 1045, 1056, 2132
Hpy188III TCNNGA 9 cut(s) 627, 738, 1325, 1808, 1859, 1894, 1994, 2027, 2420
Hpy8I GTNNAC 7 cut(s) 199, 241, 520, 755, 1045, 1056, 2132
HpyAV CCTTC 6 cut(s) 218, 858, 873, 1726, 2002, 2171
HpyCH4IV ACGT 2 cut(s) 680, 1905
HpyF3I CTNAG 7 cut(s) 98, 654, 1005, 2067, 2148, 2496, 2556
HpySE526I ACGT 2 cut(s) 680, 1905
HspAI GCGC 2 cut(s) 823, 1725
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 7 cut(s) 190, 386, 563, 596, 1162, 1855, 2058
LmnI GCTCC 2 cut(s) 873, 976
Lsp1109I GCAGC 7 cut(s) 904, 1362, 1615, 1624, 1828, 2191, 2311
LweI GCATC 8 cut(s) 169, 386, 661, 1252, 1258, 1280, 1429, 2103
MaeII ACGT 2 cut(s) 680, 1905
MaeIII GTNAC 8 cut(s) 263, 314, 718, 808, 1474, 1561, 1618, 1822
MalI GATC 7 cut(s) 192, 388, 565, 598, 1164, 1857, 2060
MbiI CCGCTC 3 cut(s) 270, 688, 1487
MboI GATC 7 cut(s) 190, 386, 563, 596, 1162, 1855, 2058
MfeI CAATTG 1 cut(s) 1671
MflI RGATCY 1 cut(s) 563
MhlI GDGCHC 5 cut(s) 85, 1132, 1382, 2522, 2586
MlsI TGGCCA 1 cut(s) 1501
MluCI AATT 7 cut(s) 814, 1317, 1507, 1654, 1671, 1690, 2217
MluNI TGGCCA 1 cut(s) 1501
MlyI GAGTC 9 cut(s) 908, 1147, 1254, 1859, 1871, 2233, 2290, 2442, 2548
MmeI TCCRAC 5 cut(s) 1004, 1054, 1586, 2261, 2332
Mox20I TGGCCA 1 cut(s) 1501
Mph1103I ATGCAT 3 cut(s) 1273, 1789, 2118
MroXI GAANNNNTTC 2 cut(s) 2232, 2407
MscI TGGCCA 1 cut(s) 1501
MseI TTAA 6 cut(s) 495, 828, 1221, 1814, 1832, 2592
MslI CAYNNNNRTG 1 cut(s) 2645
Msp20I TGGCCA 1 cut(s) 1501
MspA1I CMGCKG 2 cut(s) 602, 1353
MspI CCGG 2 cut(s) 244, 964
MspR9I CCNGG 8 cut(s) 133, 281, 732, 878, 964, 1020, 1233, 1242
MunI CAATTG 1 cut(s) 1671
MvaI CCWGG 7 cut(s) 133, 281, 732, 878, 1020, 1233, 1242
MvnI CGCG 2 cut(s) 825, 1302
NciI CCSGG 1 cut(s) 964
NcoI CCATGG 1 cut(s) 43
NdeII GATC 7 cut(s) 190, 386, 563, 596, 1162, 1855, 2058
NheI GCTAGC 3 cut(s) 781, 854, 1442
NlaIV GGNNCC 4 cut(s) 83, 846, 875, 1555
NmuCI GTSAC 3 cut(s) 314, 1474, 1822
NsiI ATGCAT 3 cut(s) 1273, 1789, 2118
PaeR7I CTCGAG 1 cut(s) 627
PdmI GAANNNNTTC 2 cut(s) 2232, 2407
PfeI GAWTC 5 cut(s) 726, 1015, 1067, 2233, 2653
PflMI CCANNNNNTGG 1 cut(s) 1750
PfoI TCCNGGA 1 cut(s) 1240
PleI GAGTC 9 cut(s) 907, 1146, 1253, 1858, 1870, 2233, 2290, 2442, 2548
PpsI GAGTC 9 cut(s) 907, 1146, 1253, 1858, 1870, 2233, 2290, 2442, 2548
PpuMI RGGWCCY 1 cut(s) 1415
PshBI ATTAAT 1 cut(s) 495
Psp1406I AACGTT 1 cut(s) 680
Psp5II RGGWCCY 1 cut(s) 1415
Psp6I CCWGG 7 cut(s) 131, 279, 730, 876, 1018, 1231, 1240
PspEI GGTNACC 1 cut(s) 263
PspFI CCCAGC 1 cut(s) 259
PspGI CCWGG 7 cut(s) 131, 279, 730, 876, 1018, 1231, 1240
PspN4I GGNNCC 4 cut(s) 83, 846, 875, 1555
PspOMI GGGCCC 1 cut(s) 81
PspPI GGNCC 7 cut(s) 81, 82, 338, 755, 1235, 1415, 1553
PspPPI RGGWCCY 1 cut(s) 1415
PstI CTGCAG 1 cut(s) 2112
PstNI CAGNNNCTG 3 cut(s) 1070, 1353, 2099
PsuI RGATCY 1 cut(s) 563
PvuII CAGCTG 2 cut(s) 602, 1353
RsaI GTAC 6 cut(s) 968, 984, 1174, 1281, 1742, 1945
RsaNI GTAC 6 cut(s) 967, 983, 1173, 1280, 1741, 1944
RseI CAYNNNNRTG 1 cut(s) 2645
SaqAI TTAA 6 cut(s) 495, 828, 1221, 1814, 1832, 2592
Sau3AI GATC 7 cut(s) 190, 386, 563, 596, 1162, 1855, 2058
Sau96I GGNCC 7 cut(s) 81, 82, 338, 755, 1235, 1415, 1553
ScaI AGTACT 1 cut(s) 1945
SchI GAGTC 9 cut(s) 908, 1147, 1254, 1859, 1871, 2233, 2290, 2442, 2548
ScrFI CCNGG 8 cut(s) 133, 281, 732, 878, 964, 1020, 1233, 1242
SduI GDGCHC 5 cut(s) 85, 1132, 1382, 2522, 2586
SfaNI GCATC 8 cut(s) 169, 386, 661, 1252, 1258, 1280, 1429, 2103
SfcI CTRYAG 2 cut(s) 714, 2108
Sfr274I CTCGAG 1 cut(s) 627
SinI GGWCC 5 cut(s) 338, 755, 1235, 1415, 1553
SlaI CTCGAG 1 cut(s) 627
SmiMI CAYNNNNRTG 1 cut(s) 2645
SmlI CTYRAG 5 cut(s) 559, 627, 645, 2561, 2609
SmoI CTYRAG 5 cut(s) 559, 627, 645, 2561, 2609
Sse9I AATT 7 cut(s) 814, 1317, 1507, 1654, 1671, 1690, 2217
StyD4I CCNGG 8 cut(s) 131, 279, 730, 876, 962, 1018, 1231, 1240
StyI CCWWGG 2 cut(s) 43, 1406
TaiI ACGT 2 cut(s) 683, 1908
TaqI TCGA 5 cut(s) 484, 628, 2125, 2165, 2421
TasI AATT 7 cut(s) 814, 1317, 1507, 1654, 1671, 1690, 2217
TatI WGTACW 2 cut(s) 1279, 1943
TauI GCSGC 4 cut(s) 152, 1490, 1634, 1637
TfiI GAWTC 5 cut(s) 726, 1015, 1067, 2233, 2653
Tru1I TTAA 6 cut(s) 495, 828, 1221, 1814, 1832, 2592
Tru9I TTAA 6 cut(s) 495, 828, 1221, 1814, 1832, 2592
TscAI CASTG 9 cut(s) 668, 1345, 1621, 1648, 1843, 2350, 2443, 2465, 2470
TseFI GTSAC 3 cut(s) 314, 1474, 1822
TseI GCWGC 7 cut(s) 917, 1350, 1628, 1637, 1841, 2204, 2324
Tsp45I GTSAC 3 cut(s) 314, 1474, 1822
TspGWI ACGGA 2 cut(s) 302, 405
TspRI CASTG 9 cut(s) 668, 1345, 1621, 1648, 1843, 2350, 2443, 2465, 2470
Van91I CCANNNNNTGG 1 cut(s) 1750
VpaK11BI GGWCC 5 cut(s) 338, 755, 1235, 1415, 1553
VspI ATTAAT 1 cut(s) 495
XagI CCTNNNNNAGG 3 cut(s) 1008, 1410, 1509
XapI RAATTY 2 cut(s) 814, 1654
XbaI TCTAGA 1 cut(s) 1807
XcmI CCANNNNNNNNNTGG 1 cut(s) 2441
XhoI CTCGAG 1 cut(s) 627
XmiI GTMKAC 1 cut(s) 240
XmnI GAANNNNTTC 2 cut(s) 2232, 2407
ZrmI AGTACT 1 cut(s) 1945
Zsp2I ATGCAT 3 cut(s) 1273, 1789, 2118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.