Rh5CG288300

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0011026
Physical Location & Seq
Reverse (-)
31567292 .. 31569237
1946 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG288300.1

Sequence Viewer

Length: 1824 bp
ATGGAAACTTTGGGTGCTTTCTTTGTTGAAGTTTGCAAGTCTTTAACCAAATTCATGTGGTCGAAGTTTGCCACCCTGAAAGAATACCCAAAAAACATCCAAACTTTGAAGAAGGAGTTGCAAAGCCTCAGTTGCCGAAGGGATGAGATAACAGATGATATTGATATAGCAAAACTAGAAGGGAAGTTCCCAGCAAGGCAAGTTGTGGACTGGCTTAAGAAGGTTGAAGCCATCGAACGTGCTGTTGAGGAGGAGATTGACCGTAAAGTGCAGCCAGTTTTGCAAGAAGTTCATATTAATGCTTCTGTTAATGGCCAGGGATGTCTTTTTGACTCTAACATGCACCAGAGGTACCATCTTAGCAAAACTGCAGCAAAGAAGTGTGATGAGGTAAAACAATTAATTACTGAATCATACAATTTTCCTACCATGTGGGATGCTTTGAGGCTTCGTGATATACCCATTCAGCATATTCCGGCACCATCTCTTGTTGGTCAGAAAGCACAAGAGAAGCTAAAGCAGCTGATGGAATTTCTGGCTGATAATAAGATCAGAAGGATTGCTGTCTATGGAATGGGAGGTTCTGGGAAGACTACGCTTGTAAAAACCTTGAACAATCAGCTCCAATCGTCTGCTTCAAAGTTATGTGATATGGTCATCTGGATCCCTGTCTCAAATGACTTGGATGTGAGTAAGGTTCAATCTCGAGTTGCTGAGAGATTGAACTTAGCAATAAATGCAGAACAGAGCATAGAGTGTAGGGCTTGTAGATTACATCAAGCATTAAAGTCAGGAAAAAGGTTCCTCCTTATTCTTGATGATGTTTGGGAGAAAATTGACTTGGACACCGTGGGGATACCACAAGGTGATGACCAAGCAAACTGCAAGATCGTAATGACAACTCGATCTCTTGCCGTGTGTAGGGAAATGATGACTGATAAGGAACTAAGGATGGAACTTCTGAATGAGGAAGAGGCTTGGAATTTATTTGCACGGAATGCAGGAATTGTAGTGGAGTCAGAACACATAAATCCTCTAGCAAGAGCAATTGCTAGCGAATGCGGTGGTTTACCACTGGCAATTGAGACTATGGGGAAGTCAATGAGGGACAAAACAATGATACAGCTATGGAAGAATGCACTATGCCAGTTGAAGCATTCAGCATCACATTATGGGAGCTTTGACAAGGTGCATCTGCGACTGGAATTGAGTTATAACTCTTTACCAAGTAAGATTCTTAAGAGGTGTTTCTTGTTTTGTTCATTGTACCCAGAAAATTTCTTAATTACTGCAAGAGAACTAATATGTGGCTGGATAGCGGATGGATTAATTATTGAGCATCCAACGTTAGAGGAGTCATTCAATGATGGGATTGCAAAAATTGAATATTTGAAAGACTCTTGCATGCTAGAACAGGGTGAATGCATTGGAACAGTAAAGATGCACAGTGTATTGAGGGAAGTAGCCTTGTGGATATCCTCAAATAGAAAAGAAACCGGGTTTTTCAGCAGCTCATTGCTGGGAATGAAAGAAAAGTTGGAGAGTTCTAACAGAGGAGTTTCATTTATGAAGAACTCTATAACCAGTTTGCCAAGTCGGTTCTCAGGGTGCTCCAACCTTACTGTATTGTTCCTCCAATGTAATCCTCTGTATAAAATTCCTGATGGTTTCTTTCGAGAACTTAGAGCCCTAAGATTCTTGAATCTAAGCAGCACTCAAATCTCTTCCTTGCCTTCTTCTCTTCTTCAACTAGCAGAGCTACACACTCCTCTTAAGAGACTGTTCTTCCCTAGAAACTCTGCCTCAAATTGGAGCCCTTTATAA

Protein Analysis

607

Amino Acids

68.84

Weight (kDa)

8.41

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 169 - 333 4.2e-39 NB-ARC domain
AAA_22 PF13401 187 - 275 2.9e-06 AAA domain
LRR_8 PF13855 538 - 587 1.9e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011026)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27190 AT4G27220 AT4G27220
fragaria_vesca FvH4_3g21750
malus_domestica MD11G1227400.v1.1 MD11G1227500.v1.1
prunus_persica Prupe.4G201800_v2.0.a1
pyrus_communis pycom11g20010
rosa_chinensis RchiOBHm_Chr5g0037231
rosa_multiflora Rmu_sc0005002.1_g000030
rosa_roxburghii Rroxscaffold_1G00043740
rosa_rugosa Rorug05G0163900 Rorug05G0163900
rosa_samantha Rh5AG253500 Rh5BG255500 Rh5CG288200 Rh5CG288300 Rh5DG263900
rosa_wichuraiana Rw5G023420 Rw5G023450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1215, 1822
Acc65I GGTACC 1 cut(s) 351
AccB1I GGYRCC 2 cut(s) 351, 478
AciI CCGC 2 cut(s) 1062, 1319
AclI AACGTT 1 cut(s) 1346
AclWI GGATC 2 cut(s) 658, 671
AcoI YGGCCR 1 cut(s) 313
AcsI RAATTY 5 cut(s) 50, 530, 982, 1276, 1656
AdeI CACNNNGTG 1 cut(s) 866
AfaI GTAC 2 cut(s) 353, 1268
AfiI CCNNNNNNNGG 2 cut(s) 921, 1809
AflII CTTAAG 3 cut(s) 215, 1238, 1772
AjnI CCWGG 1 cut(s) 315
AjuI GAANNNNNNNTTGG 4 cut(s) 824, 856, 1520, 1552
AluBI AGCT 7 cut(s) 514, 523, 622, 1126, 1179, 1512, 1759
AluI AGCT 7 cut(s) 514, 523, 622, 1126, 1179, 1512, 1759
Alw21I GWGCWC 1 cut(s) 1613
Alw26I GTCTC 3 cut(s) 676, 1079, 1771
AlwI GGATC 2 cut(s) 658, 671
Ama87I CYCGRG 1 cut(s) 705
AoxI GGCC 1 cut(s) 313
ApeKI GCWGC 5 cut(s) 271, 371, 520, 1509, 1710
ApoI RAATTY 5 cut(s) 50, 530, 982, 1276, 1656
AseI ATTAAT 3 cut(s) 297, 401, 1328
Asp718I GGTACC 1 cut(s) 351
AsuC2I CCSGG 1 cut(s) 1498
AsuHPI GGTGA 2 cut(s) 878, 1430
AsuNHI GCTAGC 1 cut(s) 1052
AvaI CYCGRG 1 cut(s) 705
BalI TGGCCA 1 cut(s) 315
BamHI GGATCC 1 cut(s) 663
BanI GGYRCC 2 cut(s) 351, 478
BanII GRGCYC 2 cut(s) 1690, 1817
BbsI GAAGAC 1 cut(s) 596
Bbv12I GWGCWC 1 cut(s) 1613
BbvI GCAGC 5 cut(s) 283, 383, 532, 1521, 1722
BccI CCATC 8 cut(s) 239, 363, 490, 520, 946, 1316, 1361, 1658
BceAI ACGGC 1 cut(s) 899
BciT130I CCWGG 1 cut(s) 317
BciVI GTATCC 1 cut(s) 849
BcnI CCSGG 1 cut(s) 1498
BcoDI GTCTC 3 cut(s) 676, 1079, 1771
BfaI CTAG 6 cut(s) 176, 1037, 1053, 1409, 1751, 1791
BfmI CTRYAG 1 cut(s) 369
BfrI CTTAAG 3 cut(s) 215, 1238, 1772
BfuI GTATCC 1 cut(s) 849
BisI GCNGC 5 cut(s) 272, 372, 521, 1510, 1711
BlsI GCNGC 5 cut(s) 273, 373, 522, 1511, 1712
Bme1390I CCNGG 2 cut(s) 317, 1498
BmeT110I CYCGRG 1 cut(s) 705
BmiI GGNNCC 5 cut(s) 353, 480, 665, 803, 1814
BmrFI CCNGG 2 cut(s) 317, 1498
BmsI GCATC 5 cut(s) 427, 1172, 1201, 1348, 1431
BmtI GCTAGC 1 cut(s) 1056
BpiI GAAGAC 1 cut(s) 596
BpuMI CCSGG 1 cut(s) 1498
BsaJI CCNNGG 2 cut(s) 316, 849
Bsc4I CCNNNNNNNGG 2 cut(s) 921, 1809
Bse1I ACTGG 6 cut(s) 215, 275, 1080, 1147, 1206, 1584
Bse3DI GCAATG 1 cut(s) 1514
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 2 cut(s) 316, 849
BseGI GGATG 8 cut(s) 96, 148, 326, 442, 691, 957, 1327, 1339
BseLI CCNNNNNNNGG 2 cut(s) 921, 1809
BseMI GCAATG 1 cut(s) 1514
BseMII CTCAG 3 cut(s) 142, 705, 1617
BseNI ACTGG 6 cut(s) 215, 275, 1080, 1147, 1206, 1584
BseRI GAGGAG 5 cut(s) 263, 266, 1367, 1569, 1758
BseXI GCAGC 5 cut(s) 283, 383, 532, 1521, 1722
BseYI CCCAGC 2 cut(s) 190, 1519
BsgI GTGCAG 1 cut(s) 290
BshFI GGCC 1 cut(s) 315
BshNI GGYRCC 2 cut(s) 351, 478
BsiHKAI GWGCWC 1 cut(s) 1613
BsiHKCI CYCGRG 1 cut(s) 705
BsiSI CCGG 2 cut(s) 476, 1497
BslFI GGGAC 1 cut(s) 1121
BslI CCNNNNNNNGG 2 cut(s) 921, 1809
BsmAI GTCTC 3 cut(s) 676, 1079, 1771
BsmFI GGGAC 1 cut(s) 1121
BsmI GAATGC 5 cut(s) 1003, 1064, 1141, 1156, 1427
BsnI GGCC 1 cut(s) 315
BsoBI CYCGRG 1 cut(s) 705
Bsp1286I GDGCHC 3 cut(s) 1613, 1690, 1817
Bsp143I GATC 4 cut(s) 549, 663, 888, 905
BspACI CCGC 2 cut(s) 1062, 1319
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 3 cut(s) 141, 706, 1616
BspLI GGNNCC 5 cut(s) 353, 480, 665, 803, 1814
BspMAI CTGCAG 1 cut(s) 373
BspOI GCTAGC 1 cut(s) 1056
BspPI GGATC 2 cut(s) 658, 671
BspT107I GGYRCC 2 cut(s) 351, 478
BspTI CTTAAG 3 cut(s) 215, 1238, 1772
BsrDI GCAATG 1 cut(s) 1514
BsrI ACTGG 6 cut(s) 215, 275, 1080, 1147, 1206, 1584
BssECI CCNNGG 2 cut(s) 316, 849
BssMI GATC 4 cut(s) 549, 663, 888, 905
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 6 cut(s) 263, 850, 1435, 1448, 1624, 1782
Bst6I CTCTTC 3 cut(s) 966, 1729, 1746
BstAFI CTTAAG 3 cut(s) 215, 1238, 1772
BstAPI GCANNNNNTGC 2 cut(s) 737, 998
BstC8I GCNNGC 2 cut(s) 1054, 1406
BstDEI CTNAG 9 cut(s) 128, 359, 714, 727, 947, 1603, 1682, 1691, 1706
BstDSI CCRYGG 1 cut(s) 849
BstF5I GGATG 8 cut(s) 96, 148, 326, 442, 691, 957, 1327, 1339
BstKTI GATC 4 cut(s) 552, 666, 891, 908
BstMAI GTCTC 3 cut(s) 676, 1079, 1771
BstMBI GATC 4 cut(s) 549, 663, 888, 905
BstMWI GCNNNNNNNGC 5 cut(s) 132, 280, 520, 737, 998
BstNI CCWGG 1 cut(s) 317
BstNSI RCATGY 2 cut(s) 343, 1408
BstSCI CCNGG 2 cut(s) 315, 1496
BstSFI CTRYAG 1 cut(s) 369
BstV1I GCAGC 5 cut(s) 283, 383, 532, 1521, 1722
BstV2I GAAGAC 1 cut(s) 596
BstX2I RGATCY 1 cut(s) 663
BstYI RGATCY 1 cut(s) 663
BsuI GTATCC 1 cut(s) 849
BsuRI GGCC 1 cut(s) 315
BtgI CCRYGG 1 cut(s) 849
BtsCI GGATG 8 cut(s) 96, 148, 326, 442, 691, 957, 1327, 1339
BtsIMutI CAGTG 2 cut(s) 1073, 1453
Cac8I GCNNGC 2 cut(s) 1054, 1406
Csp6I GTAC 2 cut(s) 352, 1267
CviAII CATG 4 cut(s) 55, 340, 430, 1405
CviQI GTAC 2 cut(s) 352, 1267
DdeI CTNAG 9 cut(s) 128, 359, 714, 727, 947, 1603, 1682, 1691, 1706
DpnI GATC 4 cut(s) 551, 665, 890, 907
DpnII GATC 4 cut(s) 549, 663, 888, 905
DraIII CACNNNGTG 1 cut(s) 866
EaeI YGGCCR 1 cut(s) 313
Eam1104I CTCTTC 3 cut(s) 966, 1729, 1746
EarI CTCTTC 3 cut(s) 966, 1729, 1746
Eco24I GRGCYC 2 cut(s) 1690, 1817
Eco32I GATATC 1 cut(s) 1476
Eco88I CYCGRG 1 cut(s) 705
EcoRII CCWGG 1 cut(s) 315
EcoRV GATATC 1 cut(s) 1476
EcoT22I ATGCAT 1 cut(s) 1427
EcoT38I GRGCYC 2 cut(s) 1690, 1817
FaeI CATG 4 cut(s) 58, 343, 433, 1408
FaqI GGGAC 1 cut(s) 1121
FatI CATG 4 cut(s) 54, 339, 429, 1404
Fnu4HI GCNGC 5 cut(s) 272, 372, 521, 1510, 1711
FokI GGATG 8 cut(s) 83, 155, 333, 449, 698, 964, 1326, 1334
FriOI GRGCYC 2 cut(s) 1690, 1817
Fsp4HI GCNGC 5 cut(s) 272, 372, 521, 1510, 1711
FspBI CTAG 6 cut(s) 176, 1037, 1053, 1409, 1751, 1791
GluI GCNGC 5 cut(s) 272, 372, 521, 1510, 1711
GsaI CCCAGC 2 cut(s) 194, 1523
HaeIII GGCC 1 cut(s) 315
HapII CCGG 2 cut(s) 476, 1497
Hin1II CATG 4 cut(s) 58, 343, 433, 1408
HinfI GANTC 8 cut(s) 332, 410, 1016, 1234, 1355, 1397, 1695, 1702
HpaII CCGG 2 cut(s) 476, 1497
HphI GGTGA 2 cut(s) 878, 1430
Hpy166II GTNNAC 2 cut(s) 208, 1070
Hpy188I TCNGA 4 cut(s) 498, 554, 963, 1021
Hpy188III TCNNGA 8 cut(s) 452, 661, 705, 792, 815, 1661, 1676, 1699
Hpy8I GTNNAC 2 cut(s) 208, 1070
HpyAV CCTTC 6 cut(s) 106, 132, 173, 214, 549, 1743
HpyCH4III ACNGT 6 cut(s) 263, 850, 1435, 1448, 1624, 1782
HpyCH4IV ACGT 2 cut(s) 238, 1346
HpyF10VI GCNNNNNNNGC 5 cut(s) 132, 280, 520, 737, 998
HpyF3I CTNAG 9 cut(s) 128, 359, 714, 727, 947, 1603, 1682, 1691, 1706
HpySE526I ACGT 2 cut(s) 238, 1346
Hsp92II CATG 4 cut(s) 58, 343, 433, 1408
KpnI GGTACC 1 cut(s) 355
Kzo9I GATC 4 cut(s) 549, 663, 888, 905
LmnI GCTCC 4 cut(s) 627, 1176, 1616, 1812
Lsp1109I GCAGC 5 cut(s) 283, 383, 532, 1521, 1722
LweI GCATC 5 cut(s) 427, 1172, 1201, 1348, 1431
MaeI CTAG 6 cut(s) 176, 1037, 1053, 1409, 1751, 1791
MaeII ACGT 2 cut(s) 238, 1346
MalI GATC 4 cut(s) 551, 665, 890, 907
MboI GATC 4 cut(s) 549, 663, 888, 905
MfeI CAATTG 2 cut(s) 1047, 1080
MflI RGATCY 1 cut(s) 663
MhlI GDGCHC 3 cut(s) 1613, 1690, 1817
MlsI TGGCCA 1 cut(s) 315
MluNI TGGCCA 1 cut(s) 315
MlyI GAGTC 4 cut(s) 326, 1025, 1364, 1391
MmeI TCCRAC 3 cut(s) 1367, 1518, 1638
Mox20I TGGCCA 1 cut(s) 315
Mph1103I ATGCAT 1 cut(s) 1427
MscI TGGCCA 1 cut(s) 315
MslI CAYNNNNRTG 1 cut(s) 297
Msp20I TGGCCA 1 cut(s) 315
MspA1I CMGCKG 1 cut(s) 523
MspCI CTTAAG 3 cut(s) 215, 1238, 1772
MspI CCGG 2 cut(s) 476, 1497
MspR9I CCNGG 2 cut(s) 317, 1498
MunI CAATTG 2 cut(s) 1047, 1080
Mva1269I GAATGC 5 cut(s) 1003, 1064, 1141, 1156, 1427
MvaI CCWGG 1 cut(s) 317
MwoI GCNNNNNNNGC 5 cut(s) 132, 280, 520, 737, 998
NciI CCSGG 1 cut(s) 1498
NdeII GATC 4 cut(s) 549, 663, 888, 905
NheI GCTAGC 1 cut(s) 1052
NlaIII CATG 4 cut(s) 58, 343, 433, 1408
NlaIV GGNNCC 5 cut(s) 353, 480, 665, 803, 1814
NsiI ATGCAT 1 cut(s) 1427
NspI RCATGY 2 cut(s) 343, 1408
PaeI GCATGC 1 cut(s) 1408
PaeR7I CTCGAG 1 cut(s) 705
PctI GAATGC 5 cut(s) 1003, 1064, 1141, 1156, 1427
PfeI GAWTC 4 cut(s) 410, 1234, 1695, 1702
PkrI GCNGC 5 cut(s) 273, 373, 522, 1511, 1712
PleI GAGTC 4 cut(s) 326, 1024, 1363, 1391
PpsI GAGTC 4 cut(s) 326, 1024, 1363, 1391
PshBI ATTAAT 3 cut(s) 297, 401, 1328
PsiI TTATAA 2 cut(s) 1215, 1822
Psp1406I AACGTT 1 cut(s) 1346
Psp6I CCWGG 1 cut(s) 315
PspFI CCCAGC 2 cut(s) 190, 1519
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 5 cut(s) 353, 480, 665, 803, 1814
PstI CTGCAG 1 cut(s) 373
PsuI RGATCY 1 cut(s) 663
PvuII CAGCTG 1 cut(s) 523
RsaI GTAC 2 cut(s) 353, 1268
RsaNI GTAC 2 cut(s) 352, 1267
RseI CAYNNNNRTG 1 cut(s) 297
SatI GCNGC 5 cut(s) 272, 372, 521, 1510, 1711
Sau3AI GATC 4 cut(s) 549, 663, 888, 905
SchI GAGTC 4 cut(s) 326, 1025, 1364, 1391
ScrFI CCNGG 2 cut(s) 317, 1498
SduI GDGCHC 3 cut(s) 1613, 1690, 1817
SfaNI GCATC 5 cut(s) 427, 1172, 1201, 1348, 1431
SfcI CTRYAG 1 cut(s) 369
Sfr274I CTCGAG 1 cut(s) 705
SlaI CTCGAG 1 cut(s) 705
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 4 cut(s) 215, 705, 1238, 1772
SmoI CTYRAG 4 cut(s) 215, 705, 1238, 1772
SphI GCATGC 1 cut(s) 1408
SsiI CCGC 2 cut(s) 1062, 1319
SspI AATATT 1 cut(s) 1388
SspMI CTAG 6 cut(s) 176, 1037, 1053, 1409, 1751, 1791
StyD4I CCNGG 2 cut(s) 315, 1496
TaaI ACNGT 6 cut(s) 263, 850, 1435, 1448, 1624, 1782
TaiI ACGT 2 cut(s) 241, 1349
TaqI TCGA 5 cut(s) 62, 234, 706, 904, 1675
TfiI GAWTC 4 cut(s) 410, 1234, 1695, 1702
TscAI CASTG 2 cut(s) 1080, 1453
TseI GCWGC 5 cut(s) 271, 371, 520, 1509, 1710
TspDTI ATGAA 6 cut(s) 43, 281, 1251, 1541, 1551, 1583
TspGWI ACGGA 1 cut(s) 1009
TspRI CASTG 2 cut(s) 1080, 1453
Vha464I CTTAAG 3 cut(s) 215, 1238, 1772
VspI ATTAAT 3 cut(s) 297, 401, 1328
XapI RAATTY 5 cut(s) 50, 530, 982, 1276, 1656
XceI RCATGY 2 cut(s) 343, 1408
XhoI CTCGAG 1 cut(s) 705
XspI CTAG 6 cut(s) 176, 1037, 1053, 1409, 1751, 1791
Zsp2I ATGCAT 1 cut(s) 1427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.