Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0017396

Physical Location & Seq

Genomic Coordinates Forward (+)

33310484 .. 33311604

Gene Structure 1121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1229200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTATTCAGCTTCGGTTGTGGACAAAGCAACACACTTTTGCAACTTGGATTGCCAAGACACGGCTACCCCTGCAAAAGTAAACAAGTACCCAGACGTAGATTTTCTACCATCCAGGTCACCTCCCATGTCAGCATCTGTAAATCCTTCCAAGATTGGTTTGGAACCGCCAAAGAACAAACACATCTTAGAAGTCCCCTTCAAATATCTAAGAATCCACTTAACAGCTTCCCAATGGTCTTTCCTTGAATTAGAGAGAAACCTGCTCACCACACCTACTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009624 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

95

Amino Acids

10.53

Weight (kDa)

7.8

Isoelectric Point (pI)

55.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017396)

Species	Orthologous Gene IDs
malus_domestica	MD11G1229200.v1.1
pyrus_communis	pycom03g01340 pycom03g19240 pycom08g03640
rosa_chinensis	RchiOBHm_Chr1g0341921 RchiOBHm_Chr1g0370511 RchiOBHm_Chr2g0129021 RchiOBHm_Chr4g0410851 RchiOBHm_Chr6g0307111 RchiOBHm_Chr7g0243261
rosa_roxburghii	Rroxscaffold_3G00270530
rosa_rugosa	Rorug05G0234700
rosa_samantha	Rh5AG313300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	270
AciI	CCGC	1 cut(s)	167
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	2 cut(s)	202, 248
AjnI	CCWGG	1 cut(s)	113
AluBI	AGCT	2 cut(s)	11, 227
AluI	AGCT	2 cut(s)	11, 227
AlwNI	CAGNNNCTG	1 cut(s)	137
AsuHPI	GGTGA	2 cut(s)	111, 259
BccI	CCATC	1 cut(s)	118
BceAI	ACGGC	1 cut(s)	78
BciT130I	CCWGG	1 cut(s)	115
BfuAI	ACCTGC	1 cut(s)	270
Bme1390I	CCNGG	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	115
BseGI	GGATG	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	61
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	179
BspACI	CCGC	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	165
BspMI	ACCTGC	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	187, 209
BstEII	GGTNACC	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	110
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNI	CCWGG	1 cut(s)	115
BstPI	GGTNACC	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	110
BveI	ACCTGC	1 cut(s)	270
CaiI	CAGNNNCTG	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	2 cut(s)	127, 282
CviJI	RGCY	3 cut(s)	11, 65, 227
CviKI_1	RGCY	3 cut(s)	11, 65, 227
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	2 cut(s)	187, 209
Eco91I	GGTNACC	1 cut(s)	117
EcoO65I	GGTNACC	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	113
FaeI	CATG	2 cut(s)	130, 285
FaiI	YATR	2 cut(s)	128, 283
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	2 cut(s)	126, 281
FokI	GGATG	1 cut(s)	97
Hin1II	CATG	2 cut(s)	130, 285
HinfI	GANTC	1 cut(s)	213
HphI	GGTGA	2 cut(s)	111, 259
Hpy166II	GTNNAC	2 cut(s)	22, 82
Hpy8I	GTNNAC	2 cut(s)	22, 82
HpyAV	CCTTC	2 cut(s)	156, 208
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	3 cut(s)	42, 74, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	2 cut(s)	187, 209
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	2 cut(s)	130, 285
LpnPI	CCDG	5 cut(s)	84, 100, 105, 127, 275
LweI	GCATC	1 cut(s)	143
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	117
MluCI	AATT	1 cut(s)	248
MnlI	CCTC	1 cut(s)	132
MseI	TTAA	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	1 cut(s)	71
NlaIII	CATG	2 cut(s)	130, 285
NlaIV	GGNNCC	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	113
PspEI	GGTNACC	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	165
PstNI	CAGNNNCTG	1 cut(s)	137
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	115
SetI	ASST	7 cut(s)	13, 99, 119, 124, 229, 264, 277
SfaNI	GCATC	1 cut(s)	143
Sse9I	AATT	1 cut(s)	248
SsiI	CCGC	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	113
TaiI	ACGT	1 cut(s)	99
TasI	AATT	1 cut(s)	248
TfiI	GAWTC	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TseFI	GTSAC	1 cut(s)	117
Tsp45I	GTSAC	1 cut(s)	117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.