Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0017396

Physical Location & Seq

Genomic Coordinates Reverse (-)

45330749 .. 45332118

Gene Structure 1370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG313300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGTTTCAGGGGTACCGAAATCAATTTCAGATTCACCGCCAACTCAGCATATCCATTTTTGGTCACAGGAAACTTGTGTTCTACCCTAATGGAAACAAGAAGAAGAAAGTAAAAAACCACATCTCACTGTACTTAGTAATGGCTGAAGCAGATTCATTACATAGTGGTTGGGAAGTATATGTTGATTTCAGATTGTTTCTGCTCGATCAGAATAAGGGAGTCTGCTTAGTCTTTAAAGGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

81

Amino Acids

9.55

Weight (kDa)

9.87

Isoelectric Point (pI)

19.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	24 - 72	3.3e-12	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017396)

Species	Orthologous Gene IDs
malus_domestica	MD11G1229200.v1.1
pyrus_communis	pycom03g01340 pycom03g19240 pycom08g03640
rosa_chinensis	RchiOBHm_Chr1g0341921 RchiOBHm_Chr1g0370511 RchiOBHm_Chr2g0129021 RchiOBHm_Chr4g0410851 RchiOBHm_Chr6g0307111 RchiOBHm_Chr7g0243261
rosa_roxburghii	Rroxscaffold_3G00270530
rosa_rugosa	Rorug05G0234700
rosa_samantha	Rh5AG313300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	12
AccB1I	GGYRCC	1 cut(s)	12
AciI	CCGC	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	165
AfaI	GTAC	3 cut(s)	14, 131, 241
Asp718I	GGTACC	1 cut(s)	12
AsuHPI	GGTGA	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	58
BshNI	GGYRCC	1 cut(s)	12
Bsp143I	GATC	1 cut(s)	205
BspACI	CCGC	1 cut(s)	37
BspCNI	CTCAG	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	12
BssMI	GATC	1 cut(s)	205
Bst4CI	ACNGT	1 cut(s)	129
BstDEI	CTNAG	3 cut(s)	44, 133, 226
BstKTI	GATC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	125
Csp6I	GTAC	3 cut(s)	13, 130, 240
CviJI	RGCY	1 cut(s)	143
CviKI_1	RGCY	1 cut(s)	143
CviQI	GTAC	3 cut(s)	13, 130, 240
DdeI	CTNAG	3 cut(s)	44, 133, 226
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
DraI	TTTAAA	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	165
FaiI	YATR	4 cut(s)	50, 162, 178, 180
HinfI	GANTC	3 cut(s)	31, 152, 219
HphI	GGTGA	1 cut(s)	26
Hpy188I	TCNGA	3 cut(s)	30, 191, 210
HpyCH4III	ACNGT	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	1 cut(s)	45
HpyF3I	CTNAG	3 cut(s)	44, 133, 226
KpnI	GGTACC	1 cut(s)	16
Kzo9I	GATC	1 cut(s)	205
LpnPI	CCDG	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	2 cut(s)	112, 115
MluCI	AATT	1 cut(s)	23
MlyI	GAGTC	1 cut(s)	228
MseI	TTAA	2 cut(s)	234, 244
MwoI	GCNNNNNNNGC	1 cut(s)	45
NdeII	GATC	1 cut(s)	205
NlaIV	GGNNCC	1 cut(s)	14
NmuCI	GTSAC	1 cut(s)	62
PfeI	GAWTC	2 cut(s)	31, 152
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	14
RsaI	GTAC	3 cut(s)	14, 131, 241
RsaNI	GTAC	3 cut(s)	13, 130, 240
SaqAI	TTAA	2 cut(s)	234, 244
Sau3AI	GATC	1 cut(s)	205
SchI	GAGTC	1 cut(s)	228
SetI	ASST	1 cut(s)	241
SgeI	CNNG	5 cut(s)	20, 79, 86, 109, 215
Sse9I	AATT	1 cut(s)	23
SsiI	CCGC	1 cut(s)	37
TaaI	ACNGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	204
TasI	AATT	1 cut(s)	23
TatI	WGTACW	1 cut(s)	129
TfiI	GAWTC	2 cut(s)	31, 152
Tru1I	TTAA	2 cut(s)	234, 244
Tru9I	TTAA	2 cut(s)	234, 244
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	1 cut(s)	144
TspRI	CASTG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.