gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD11G1229200.v1.1 |
| pyrus_communis | pycom03g01340 pycom03g19240 pycom08g03640 |
| rosa_chinensis | RchiOBHm_Chr1g0341921 RchiOBHm_Chr1g0370511 RchiOBHm_Chr2g0129021 RchiOBHm_Chr4g0410851 RchiOBHm_Chr6g0307111 RchiOBHm_Chr7g0243261 |
| rosa_roxburghii | Rroxscaffold_3G00270530 |
| rosa_rugosa | Rorug05G0234700 |
| rosa_samantha | Rh5AG313300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 132 |
| AcuI | CTGAAG | 1 cut(s) | 52 |
| AgsI | TTSAA | 1 cut(s) | 55 |
| AleI | CACNNNNGTG | 1 cut(s) | 197 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 47, 79 |
| AoxI | GGCC | 1 cut(s) | 108 |
| ApeKI | GCWGC | 1 cut(s) | 11 |
| AspS9I | GGNCC | 1 cut(s) | 108 |
| AxyI | CCTNAGG | 1 cut(s) | 210 |
| BciVI | GTATCC | 1 cut(s) | 216 |
| BfaI | CTAG | 2 cut(s) | 137, 143 |
| BfuI | GTATCC | 1 cut(s) | 216 |
| BglII | AGATCT | 1 cut(s) | 139 |
| BisI | GCNGC | 1 cut(s) | 12 |
| BlsI | GCNGC | 1 cut(s) | 13 |
| BmgT120I | GGNCC | 1 cut(s) | 108 |
| BmsI | GCATC | 1 cut(s) | 260 |
| BsaAI | YACGTR | 1 cut(s) | 80 |
| BsaJI | CCNNGG | 1 cut(s) | 104 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 113, 143 |
| Bse21I | CCTNAGG | 1 cut(s) | 210 |
| BseDI | CCNNGG | 1 cut(s) | 104 |
| BseGI | GGATG | 1 cut(s) | 235 |
| BseMII | CTCAG | 1 cut(s) | 201 |
| BseRI | GAGGAG | 1 cut(s) | 158 |
| BshFI | GGCC | 1 cut(s) | 110 |
| BsnI | GGCC | 1 cut(s) | 110 |
| Bsp143I | GATC | 2 cut(s) | 139, 217 |
| BspACI | CCGC | 1 cut(s) | 132 |
| BspANI | GGCC | 1 cut(s) | 110 |
| BspCNI | CTCAG | 1 cut(s) | 202 |
| BssECI | CCNNGG | 1 cut(s) | 104 |
| BssMI | GATC | 2 cut(s) | 139, 217 |
| BssT1I | CCWWGG | 1 cut(s) | 104 |
| BstBAI | YACGTR | 1 cut(s) | 80 |
| BstDEI | CTNAG | 2 cut(s) | 60, 210 |
| BstEII | GGTNACC | 1 cut(s) | 183 |
| BstF5I | GGATG | 1 cut(s) | 235 |
| BstKTI | GATC | 2 cut(s) | 142, 220 |
| BstMBI | GATC | 2 cut(s) | 139, 217 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 248 |
| BstPI | GGTNACC | 1 cut(s) | 183 |
| BstSNI | TACGTA | 1 cut(s) | 80 |
| BstX2I | RGATCY | 1 cut(s) | 139 |
| BstYI | RGATCY | 1 cut(s) | 139 |
| Bsu36I | CCTNAGG | 1 cut(s) | 210 |
| BsuI | GTATCC | 1 cut(s) | 216 |
| BsuRI | GGCC | 1 cut(s) | 110 |
| BtsCI | GGATG | 1 cut(s) | 235 |
| BtsIMutI | CAGTG | 1 cut(s) | 234 |
| Cfr13I | GGNCC | 1 cut(s) | 108 |
| CviAII | CATG | 1 cut(s) | 173 |
| CviJI | RGCY | 6 cut(s) | 11, 41, 84, 110, 242, 266 |
| CviKI_1 | RGCY | 6 cut(s) | 11, 41, 84, 110, 242, 266 |
| DdeI | CTNAG | 2 cut(s) | 60, 210 |
| DpnI | GATC | 2 cut(s) | 141, 219 |
| DpnII | GATC | 2 cut(s) | 139, 217 |
| Eco105I | TACGTA | 1 cut(s) | 80 |
| Eco130I | CCWWGG | 1 cut(s) | 104 |
| Eco57I | CTGAAG | 1 cut(s) | 52 |
| Eco81I | CCTNAGG | 1 cut(s) | 210 |
| Eco91I | GGTNACC | 1 cut(s) | 183 |
| EcoO65I | GGTNACC | 1 cut(s) | 183 |
| EcoT14I | CCWWGG | 1 cut(s) | 104 |
| ErhI | CCWWGG | 1 cut(s) | 104 |
| FaeI | CATG | 1 cut(s) | 176 |
| FaiI | YATR | 5 cut(s) | 38, 87, 121, 174, 259 |
| FatI | CATG | 1 cut(s) | 172 |
| Fnu4HI | GCNGC | 1 cut(s) | 12 |
| FokI | GGATG | 1 cut(s) | 222 |
| Fsp4HI | GCNGC | 1 cut(s) | 12 |
| FspBI | CTAG | 2 cut(s) | 137, 143 |
| GluI | GCNGC | 1 cut(s) | 12 |
| HaeIII | GGCC | 1 cut(s) | 110 |
| Hin1II | CATG | 1 cut(s) | 176 |
| HinfI | GANTC | 1 cut(s) | 33 |
| Hpy188III | TCNNGA | 1 cut(s) | 209 |
| HpyAV | CCTTC | 1 cut(s) | 76 |
| HpyCH4IV | ACGT | 1 cut(s) | 79 |
| HpyCH4V | TGCA | 1 cut(s) | 251 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 248 |
| HpyF3I | CTNAG | 2 cut(s) | 60, 210 |
| HpySE526I | ACGT | 1 cut(s) | 79 |
| Hsp92II | CATG | 1 cut(s) | 176 |
| Kzo9I | GATC | 2 cut(s) | 139, 217 |
| LmnI | GCTCC | 1 cut(s) | 171 |
| LpnPI | CCDG | 3 cut(s) | 55, 222, 252 |
| LweI | GCATC | 1 cut(s) | 260 |
| MaeI | CTAG | 2 cut(s) | 137, 143 |
| MaeII | ACGT | 1 cut(s) | 79 |
| MaeIII | GTNAC | 4 cut(s) | 21, 75, 175, 183 |
| MalI | GATC | 2 cut(s) | 141, 219 |
| MboI | GATC | 2 cut(s) | 139, 217 |
| MboII | GAAGA | 1 cut(s) | 212 |
| MflI | RGATCY | 1 cut(s) | 139 |
| MnlI | CCTC | 5 cut(s) | 126, 139, 179, 198, 205 |
| MslI | CAYNNNNRTG | 1 cut(s) | 197 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 248 |
| NdeII | GATC | 2 cut(s) | 139, 217 |
| NlaIII | CATG | 1 cut(s) | 176 |
| NmuCI | GTSAC | 2 cut(s) | 21, 175 |
| OliI | CACNNNNGTG | 1 cut(s) | 197 |
| PfeI | GAWTC | 1 cut(s) | 33 |
| PkrI | GCNGC | 1 cut(s) | 13 |
| Ppu21I | YACGTR | 1 cut(s) | 80 |
| PspEI | GGTNACC | 1 cut(s) | 183 |
| PspPI | GGNCC | 1 cut(s) | 108 |
| PsuI | RGATCY | 1 cut(s) | 139 |
| RseI | CAYNNNNRTG | 1 cut(s) | 197 |
| SatI | GCNGC | 1 cut(s) | 12 |
| Sau3AI | GATC | 2 cut(s) | 139, 217 |
| Sau96I | GGNCC | 1 cut(s) | 108 |
| SetI | ASST | 6 cut(s) | 82, 106, 185, 190, 216, 272 |
| SfaNI | GCATC | 1 cut(s) | 260 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 197 |
| SnaBI | TACGTA | 1 cut(s) | 80 |
| SsiI | CCGC | 1 cut(s) | 132 |
| SspMI | CTAG | 2 cut(s) | 137, 143 |
| StyI | CCWWGG | 1 cut(s) | 104 |
| TaiI | ACGT | 1 cut(s) | 82 |
| TfiI | GAWTC | 1 cut(s) | 33 |
| TscAI | CASTG | 1 cut(s) | 234 |
| TseFI | GTSAC | 2 cut(s) | 21, 175 |
| TseI | GCWGC | 1 cut(s) | 11 |
| Tsp45I | GTSAC | 2 cut(s) | 21, 175 |
| TspDTI | ATGAA | 1 cut(s) | 25 |
| TspRI | CASTG | 1 cut(s) | 234 |
| XspI | CTAG | 2 cut(s) | 137, 143 |