Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0017396

Physical Location & Seq

Genomic Coordinates Forward (+)

1017169 .. 1018799

Gene Structure 1631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g01340.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGCGACCCCACATTTACTCTCATATAGGTATCCTACATCATCAGCAGTCAGCACACTTCTTCCATCATAGGAATGGGTATGTAAGTGTGTTTCTTCTTGAAACTAGCCAAACCAGTTTGCCTATTGAACCTAGACCATGGGATCTCCAATCAACTAGGTTAGGTTTCCGTTTAGCAGTTTCATTTTACTCTATTGGCTTTAAACCCATTCCCCTCGATGTATGCTTAACTTGCTCTCTAGACAAACCTTTAGTAAAAATTACACCACTAGAGAGCCATTGCTTTATCGTATTATGCCTTCGTCTAATTTGTCTAGACTTCCCATTGTATACACTATTTTTAGCTCGATATTGTGCAGCTAAACTATCACAGTGTATACATATTGCCGTTACAGGTTTAGGCCATATGGGAACATCCTCCAAAAAATCTCTTAGCCACTCAGCTTCTCCTCCAACCATATCGAGAGCTATAAATTCCGATTCCATAGTTGATCGGGCTATGCATGTTTGTTTAGAAGATTTCCAAGATATTGCTGCTCCTCCCAAAGTAAATACATATCCACTTGTGGATTTTGTATCATTACTATCCGATATCCAATTCGCATCAGTAAATCCTTCAATGTATGCTTTAAGTATCTTAATACTCGAATTAAAGCTTCCCAATGATCATGCCCAGGATTGCATGTATATCTACTCAGTCTACTCACTGAGTATGCTATATCAGGCCTTGTACATCACGTTGAGATATAGCACCACCTCTATTTTTCTTAAGTTTGCTATTGGCATCAAAAGGAGTAATTGCATCTTTACTTTCCAAATGACCATATTTTCTAAGTGTAGCTTCTATATAATGGGACTAATCACATCAGCTAGTCCAAGATCTTTCATATCGAAACTTGATTTCAATATCTTCTTGGTCCAATTTATTATCTCTTTGTTAGTTCCCATTATAAGCATATCATCTACATATAAACACAACATAACCTTAAAACCGTGTGTTATCATAATATGGTCAAATTTTTCATGCCATTGCTTTGGAGCTTGTTTAAGCCCATATAATGATTTCACAAGTTTACAAACTTTGTATATATTTCCTCATCTAAGTCTCCATTTAAGAATGCAGTCTTTACATCCATTTGATGTATTTCCATGTTATGGAGTGCAGCGAGTATGTATCAAAGAAATCCAAACCATGTTTTTGACGGTATCCTTTAGCTACCAAACGAGCCTTATATTTGTCAATTGTACCATCAGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005247 GO:0005253 GO:0005254 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006821 GO:0008150 GO:0008308 GO:0008324 GO:0008509 GO:0009671 GO:0009705 GO:0010035 GO:0010167 GO:0015075 GO:0015077 GO:0015078 GO:0015103 GO:0015108 GO:0015112 GO:0015267 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015296 GO:0015318 GO:0015513 GO:0015672 GO:0015698 GO:0015706 GO:0016020 GO:0022803 GO:0022804 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0022890 GO:0031090 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098661 GO:0098662 GO:0098805 GO:1901698 GO:1901700 GO:1902476 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS Voltage_CLC

Protein Analysis

420

Amino Acids

47.65

Weight (kDa)

8.73

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017396)

Species	Orthologous Gene IDs
malus_domestica	MD11G1229200.v1.1
pyrus_communis	pycom03g01340 pycom03g19240 pycom08g03640
rosa_chinensis	RchiOBHm_Chr1g0341921 RchiOBHm_Chr1g0370511 RchiOBHm_Chr2g0129021 RchiOBHm_Chr4g0410851 RchiOBHm_Chr6g0307111 RchiOBHm_Chr7g0243261
rosa_roxburghii	Rroxscaffold_3G00270530
rosa_rugosa	Rorug05G0234700
rosa_samantha	Rh5AG313300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	950
AccB7I	CCANNNNNTGG	1 cut(s)	1154
AccI	GTMKAC	3 cut(s)	329, 376, 699
AclWI	GGATC	1 cut(s)	150
AcsI	RAATTY	2 cut(s)	472, 1015
AfaI	GTAC	2 cut(s)	731, 1246
AfiI	CCNNNNNNNGG	1 cut(s)	1154
AflII	CTTAAG	1 cut(s)	767
AgsI	TTSAA	4 cut(s)	101, 128, 618, 904
AjnI	CCWGG	1 cut(s)	672
AluBI	AGCT	9 cut(s)	344, 359, 443, 467, 655, 840, 869, 1040, 1215
AluI	AGCT	9 cut(s)	344, 359, 443, 467, 655, 840, 869, 1040, 1215
Alw26I	GTCTC	1 cut(s)	1109
AlwI	GGATC	1 cut(s)	150
AoxI	GGCC	2 cut(s)	400, 723
ApeKI	GCWGC	3 cut(s)	356, 533, 1162
ApoI	RAATTY	2 cut(s)	472, 1015
AspS9I	GGNCC	1 cut(s)	916
AvaII	GGWCC	1 cut(s)	916
BarI	GAAGNNNNNNTAC	2 cut(s)	282, 314
BbvI	GCAGC	3 cut(s)	368, 520, 1174
BccI	CCATC	2 cut(s)	72, 1256
BceAI	ACGGC	1 cut(s)	371
BciT130I	CCWGG	1 cut(s)	674
BciVI	GTATCC	2 cut(s)	41, 1216
BclI	TGATCA	1 cut(s)	664
BcoDI	GTCTC	1 cut(s)	1109
BfaI	CTAG	7 cut(s)	105, 132, 156, 239, 269, 314, 870
BfrI	CTTAAG	1 cut(s)	767
BfuI	GTATCC	2 cut(s)	41, 1216
BglII	AGATCT	1 cut(s)	878
BisI	GCNGC	3 cut(s)	357, 534, 1163
BlsI	GCNGC	3 cut(s)	358, 535, 1164
Bme1390I	CCNGG	1 cut(s)	674
Bme18I	GGWCC	1 cut(s)	916
BmgT120I	GGNCC	1 cut(s)	916
BmrFI	CCNGG	1 cut(s)	674
BmsI	GCATC	3 cut(s)	611, 792, 810
BsaJI	CCNNGG	2 cut(s)	137, 672
Bsc4I	CCNNNNNNNGG	1 cut(s)	1154
Bse1I	ACTGG	1 cut(s)	114
Bse3DI	GCAATG	2 cut(s)	277, 1027
BseBI	CCWGG	1 cut(s)	674
BseDI	CCNNGG	2 cut(s)	137, 672
BseGI	GGATG	2 cut(s)	413, 1129
BseLI	CCNNNNNNNGG	1 cut(s)	1154
BseMI	GCAATG	2 cut(s)	277, 1027
BseMII	CTCAG	3 cut(s)	453, 698, 708
BseNI	ACTGG	1 cut(s)	114
BseRI	GAGGAG	2 cut(s)	438, 528
BseXI	GCAGC	3 cut(s)	368, 520, 1174
BsgI	GTGCAG	2 cut(s)	375, 1181
BshFI	GGCC	2 cut(s)	402, 725
BslFI	GGGAC	1 cut(s)	867
BslI	CCNNNNNNNGG	1 cut(s)	1154
BsmAI	GTCTC	1 cut(s)	1109
BsmFI	GGGAC	1 cut(s)	867
BsmI	GAATGC	1 cut(s)	1122
BsnI	GGCC	2 cut(s)	402, 725
Bsp1407I	TGTACA	1 cut(s)	729
Bsp143I	GATC	4 cut(s)	142, 490, 664, 878
Bsp19I	CCATGG	1 cut(s)	137
BspANI	GGCC	2 cut(s)	402, 725
BspCNI	CTCAG	3 cut(s)	452, 699, 707
BspPI	GGATC	1 cut(s)	150
BspTI	CTTAAG	1 cut(s)	767
BsrDI	GCAATG	2 cut(s)	277, 1027
BsrGI	TGTACA	1 cut(s)	729
BsrI	ACTGG	1 cut(s)	114
BssECI	CCNNGG	2 cut(s)	137, 672
BssMI	GATC	4 cut(s)	142, 490, 664, 878
BssNAI	GTATAC	2 cut(s)	330, 377
BssT1I	CCWWGG	1 cut(s)	137
Bst1107I	GTATAC	2 cut(s)	330, 377
Bst2UI	CCWGG	1 cut(s)	674
Bst4CI	ACNGT	3 cut(s)	372, 993, 1204
BstAFI	CTTAAG	1 cut(s)	767
BstAUI	TGTACA	1 cut(s)	729
BstDEI	CTNAG	6 cut(s)	431, 439, 694, 707, 831, 1100
BstDSI	CCRYGG	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	413, 1129
BstKTI	GATC	4 cut(s)	145, 493, 667, 881
BstMAI	GTCTC	1 cut(s)	1109
BstMBI	GATC	4 cut(s)	142, 490, 664, 878
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstNI	CCWGG	1 cut(s)	674
BstNSI	RCATGY	2 cut(s)	506, 685
BstSCI	CCNGG	1 cut(s)	672
BstV1I	GCAGC	3 cut(s)	368, 520, 1174
BstX2I	RGATCY	2 cut(s)	142, 878
BstXI	CCANNNNNNTGG	1 cut(s)	1034
BstYI	RGATCY	2 cut(s)	142, 878
BstZ17I	GTATAC	2 cut(s)	330, 377
BsuI	GTATCC	2 cut(s)	41, 1216
BsuRI	GGCC	2 cut(s)	402, 725
BtgI	CCRYGG	1 cut(s)	137
BtsCI	GGATG	2 cut(s)	413, 1129
BtsIMutI	CAGTG	2 cut(s)	377, 704
Cfr13I	GGNCC	1 cut(s)	916
Csp6I	GTAC	2 cut(s)	730, 1245
CviAII	CATG	7 cut(s)	138, 503, 668, 682, 1023, 1149, 1192
CviQI	GTAC	2 cut(s)	730, 1245
DdeI	CTNAG	6 cut(s)	431, 439, 694, 707, 831, 1100
DpnI	GATC	4 cut(s)	144, 492, 666, 880
DpnII	GATC	4 cut(s)	142, 490, 664, 878
DraI	TTTAAA	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	137
Eco147I	AGGCCT	1 cut(s)	725
Eco32I	GATATC	1 cut(s)	592
Eco47I	GGWCC	1 cut(s)	916
EcoRII	CCWGG	1 cut(s)	672
EcoRV	GATATC	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	137
EcoT22I	ATGCAT	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	7 cut(s)	141, 506, 671, 685, 1026, 1152, 1195
FalI	AAGNNNNNCTT	2 cut(s)	824, 856
FaqI	GGGAC	1 cut(s)	867
FatI	CATG	7 cut(s)	137, 502, 667, 681, 1022, 1148, 1191
FauNDI	CATATG	1 cut(s)	405
FbaI	TGATCA	1 cut(s)	664
FblI	GTMKAC	3 cut(s)	329, 376, 699
Fnu4HI	GCNGC	3 cut(s)	357, 534, 1163
FokI	GGATG	2 cut(s)	400, 1116
Fsp4HI	GCNGC	3 cut(s)	357, 534, 1163
FspBI	CTAG	7 cut(s)	105, 132, 156, 239, 269, 314, 870
GluI	GCNGC	3 cut(s)	357, 534, 1163
HaeIII	GGCC	2 cut(s)	402, 725
Hin1II	CATG	7 cut(s)	141, 506, 671, 685, 1026, 1152, 1195
HindIII	AAGCTT	1 cut(s)	653
HinfI	GANTC	1 cut(s)	479
Hpy166II	GTNNAC	4 cut(s)	330, 377, 700, 1073
Hpy188I	TCNGA	2 cut(s)	478, 589
Hpy188III	TCNNGA	4 cut(s)	98, 239, 314, 462
Hpy8I	GTNNAC	4 cut(s)	330, 377, 700, 1073
HpyAV	CCTTC	2 cut(s)	308, 624
HpyCH4III	ACNGT	3 cut(s)	372, 993, 1204
HpyCH4IV	ACGT	1 cut(s)	737
HpyCH4V	TGCA	6 cut(s)	356, 502, 681, 801, 1120, 1162
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpyF3I	CTNAG	6 cut(s)	431, 439, 694, 707, 831, 1100
HpySE526I	ACGT	1 cut(s)	737
Hsp92II	CATG	7 cut(s)	141, 506, 671, 685, 1026, 1152, 1195
Ksp22I	TGATCA	1 cut(s)	664
Kzo9I	GATC	4 cut(s)	142, 490, 664, 878
LmnI	GCTCC	2 cut(s)	541, 1037
LpnPI	CCDG	6 cut(s)	127, 378, 659, 686, 707, 1237
Lsp1109I	GCAGC	3 cut(s)	368, 520, 1174
LweI	GCATC	3 cut(s)	611, 792, 810
MaeI	CTAG	7 cut(s)	105, 132, 156, 239, 269, 314, 870
MaeII	ACGT	1 cut(s)	737
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	4 cut(s)	144, 492, 666, 880
MboI	GATC	4 cut(s)	142, 490, 664, 878
MboII	GAAGA	4 cut(s)	52, 86, 527, 901
MfeI	CAATTG	1 cut(s)	1240
MflI	RGATCY	2 cut(s)	142, 878
MluCI	AATT	9 cut(s)	258, 306, 472, 596, 647, 796, 920, 1015, 1240
MmeI	TCCRAC	1 cut(s)	476
MnlI	CCTC	6 cut(s)	224, 427, 459, 549, 766, 1104
Mph1103I	ATGCAT	1 cut(s)	504
MslI	CAYNNNNRTG	1 cut(s)	72
MspCI	CTTAAG	1 cut(s)	767
MspR9I	CCNGG	1 cut(s)	674
MunI	CAATTG	1 cut(s)	1240
Mva1269I	GAATGC	1 cut(s)	1122
MvaI	CCWGG	1 cut(s)	674
MwoI	GCNNNNNNNGC	1 cut(s)	231
NcoI	CCATGG	1 cut(s)	137
NdeI	CATATG	1 cut(s)	405
NdeII	GATC	4 cut(s)	142, 490, 664, 878
NlaIII	CATG	7 cut(s)	141, 506, 671, 685, 1026, 1152, 1195
NsiI	ATGCAT	1 cut(s)	504
NspI	RCATGY	2 cut(s)	506, 685
PceI	AGGCCT	1 cut(s)	725
PctI	GAATGC	1 cut(s)	1122
PfeI	GAWTC	1 cut(s)	479
PflMI	CCANNNNNTGG	1 cut(s)	1154
PkrI	GCNGC	3 cut(s)	358, 535, 1164
PsiI	TTATAA	1 cut(s)	950
Psp6I	CCWGG	1 cut(s)	672
PspGI	CCWGG	1 cut(s)	672
PspPI	GGNCC	1 cut(s)	916
PsuI	RGATCY	2 cut(s)	142, 878
RsaI	GTAC	2 cut(s)	731, 1246
RsaNI	GTAC	2 cut(s)	730, 1245
RseI	CAYNNNNRTG	1 cut(s)	72
SatI	GCNGC	3 cut(s)	357, 534, 1163
Sau3AI	GATC	4 cut(s)	142, 490, 664, 878
Sau96I	GGNCC	1 cut(s)	916
ScrFI	CCNGG	1 cut(s)	674
SfaNI	GCATC	3 cut(s)	611, 792, 810
SinI	GGWCC	1 cut(s)	916
SmiMI	CAYNNNNRTG	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
Sse9I	AATT	9 cut(s)	258, 306, 472, 596, 647, 796, 920, 1015, 1240
SseBI	AGGCCT	1 cut(s)	725
SspMI	CTAG	7 cut(s)	105, 132, 156, 239, 269, 314, 870
StuI	AGGCCT	1 cut(s)	725
StyD4I	CCNGG	1 cut(s)	672
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	3 cut(s)	372, 993, 1204
TaiI	ACGT	1 cut(s)	740
TaqI	TCGA	5 cut(s)	216, 346, 461, 645, 890
TasI	AATT	9 cut(s)	258, 306, 472, 596, 647, 796, 920, 1015, 1240
TatI	WGTACW	1 cut(s)	729
TfiI	GAWTC	1 cut(s)	479
TscAI	CASTG	2 cut(s)	377, 711
TseI	GCWGC	3 cut(s)	356, 533, 1162
TspDTI	ATGAA	3 cut(s)	171, 874, 1011
TspGWI	ACGGA	1 cut(s)	158
TspRI	CASTG	2 cut(s)	377, 711
Van91I	CCANNNNNTGG	1 cut(s)	1154
Vha464I	CTTAAG	1 cut(s)	767
VpaK11BI	GGWCC	1 cut(s)	916
XapI	RAATTY	2 cut(s)	472, 1015
XbaI	TCTAGA	2 cut(s)	238, 313
XceI	RCATGY	2 cut(s)	506, 685
XcmI	CCANNNNNNNNNTGG	1 cut(s)	71
XmiI	GTMKAC	3 cut(s)	329, 376, 699
XspI	CTAG	7 cut(s)	105, 132, 156, 239, 269, 314, 870
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.