Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017396

Physical Location & Seq

Genomic Coordinates Reverse (-)

34626117 .. 34626631

Gene Structure 515 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38174

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAAACTGGTGCTGTACCCAAATGGAAACAAGAAGAAGAATGTGGAAGACCACATCTCTGTCTACTTGAGCATAGCCGGAGAAGATTCACTGCAGACTGGTTGGGGAGTATCTGTTGATTTTAGACTGTTTTTGCTTGATCAGAATAAGGGAATGTACTTGGTTCTTGAAGGCACAGCTTCTGCACTTGATCTGGCAACAACTTTTTGCTTTTTGCTACGCCAAGTGACAAGGTTCCCTCCAACAAAAGTGAAGTACCCAGATGTAGAACGTCTGTCAGTTTTATCACCAGCCCAATCTGCATCTGTGTACCCAACAACTTCCAATTCATCTTTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

113

Amino Acids

12.58

Weight (kDa)

7.83

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	1 - 51	3.4e-11	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017396)

Species	Orthologous Gene IDs
malus_domestica	MD11G1229200.v1.1
pyrus_communis	pycom03g01340 pycom03g19240 pycom08g03640
rosa_chinensis	RchiOBHm_Chr1g0341921 RchiOBHm_Chr1g0370511 RchiOBHm_Chr2g0129021 RchiOBHm_Chr4g0410851 RchiOBHm_Chr6g0307111 RchiOBHm_Chr7g0243261
rosa_roxburghii	Rroxscaffold_3G00270530
rosa_rugosa	Rorug05G0234700
rosa_samantha	Rh5AG313300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	63
AfaI	GTAC	4 cut(s)	17, 158, 257, 311
AgsI	TTSAA	1 cut(s)	170
AluBI	AGCT	1 cut(s)	179
AluI	AGCT	1 cut(s)	179
AlwNI	CAGNNNCTG	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	54
BclI	TGATCA	1 cut(s)	139
BfmI	CTRYAG	1 cut(s)	92
BmiI	GGNNCC	1 cut(s)	236
BmsI	GCATC	1 cut(s)	311
BpiI	GAAGAC	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	88
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bse1I	ACTGG	2 cut(s)	12, 103
BseNI	ACTGG	2 cut(s)	12, 103
BsgI	GTGCAG	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	78
Bsp143I	GATC	2 cut(s)	139, 190
BspLI	GGNNCC	1 cut(s)	236
BspMAI	CTGCAG	1 cut(s)	96
BsrI	ACTGG	2 cut(s)	12, 103
BssMI	GATC	2 cut(s)	139, 190
Bst4CI	ACNGT	1 cut(s)	129
BstKTI	GATC	2 cut(s)	142, 193
BstMBI	GATC	2 cut(s)	139, 190
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstSFI	CTRYAG	1 cut(s)	92
BstV2I	GAAGAC	1 cut(s)	54
BtsI	GCAGTG	1 cut(s)	89
BtsIMutI	CAGTG	1 cut(s)	89
CaiI	CAGNNNCTG	1 cut(s)	182
Csp6I	GTAC	4 cut(s)	16, 157, 256, 310
CviJI	RGCY	3 cut(s)	77, 179, 293
CviKI_1	RGCY	3 cut(s)	77, 179, 293
CviQI	GTAC	4 cut(s)	16, 157, 256, 310
DpnI	GATC	2 cut(s)	141, 192
DpnII	GATC	2 cut(s)	139, 190
FaiI	YATR	1 cut(s)	74
FbaI	TGATCA	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	63
HapII	CCGG	1 cut(s)	78
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	1 cut(s)	279
Hpy166II	GTNNAC	2 cut(s)	64, 310
Hpy188I	TCNGA	2 cut(s)	144, 341
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	2 cut(s)	64, 310
HpyAV	CCTTC	1 cut(s)	164
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	3 cut(s)	94, 185, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpySE526I	ACGT	1 cut(s)	271
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	139, 190
LpnPI	CCDG	5 cut(s)	84, 91, 179, 273, 303
LweI	GCATC	1 cut(s)	311
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	141, 192
MboI	GATC	2 cut(s)	139, 190
MboII	GAAGA	4 cut(s)	46, 49, 59, 95
MluCI	AATT	1 cut(s)	325
MmeI	TCCRAC	1 cut(s)	266
MnlI	CCTC	1 cut(s)	249
MspI	CCGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeII	GATC	2 cut(s)	139, 190
NlaIV	GGNNCC	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	236
PstI	CTGCAG	1 cut(s)	96
PstNI	CAGNNNCTG	1 cut(s)	182
RsaI	GTAC	4 cut(s)	17, 158, 257, 311
RsaNI	GTAC	4 cut(s)	16, 157, 256, 310
Sau3AI	GATC	2 cut(s)	139, 190
SetI	ASST	3 cut(s)	181, 236, 274
SfaNI	GCATC	1 cut(s)	311
SfcI	CTRYAG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
Sse9I	AATT	1 cut(s)	325
TaaI	ACNGT	1 cut(s)	129
TaiI	ACGT	1 cut(s)	274
TasI	AATT	1 cut(s)	325
TatI	WGTACW	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	86
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	2 cut(s)	17, 318
TspRI	CASTG	1 cut(s)	96
XmiI	GTMKAC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.