gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD11G1229200.v1.1 |
| pyrus_communis | pycom03g01340 pycom03g19240 pycom08g03640 |
| rosa_chinensis | RchiOBHm_Chr1g0341921 RchiOBHm_Chr1g0370511 RchiOBHm_Chr2g0129021 RchiOBHm_Chr4g0410851 RchiOBHm_Chr6g0307111 RchiOBHm_Chr7g0243261 |
| rosa_roxburghii | Rroxscaffold_3G00270530 |
| rosa_rugosa | Rorug05G0234700 |
| rosa_samantha | Rh5AG313300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 200 |
| AciI | CCGC | 1 cut(s) | 126 |
| AcuI | CTGAAG | 1 cut(s) | 46 |
| AfaI | GTAC | 1 cut(s) | 116 |
| AgsI | TTSAA | 1 cut(s) | 49 |
| AleI | CACNNNNGTG | 1 cut(s) | 191 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 41, 73 |
| AluBI | AGCT | 1 cut(s) | 260 |
| AluI | AGCT | 1 cut(s) | 260 |
| AoxI | GGCC | 1 cut(s) | 102 |
| ApeKI | GCWGC | 1 cut(s) | 5 |
| AspS9I | GGNCC | 1 cut(s) | 102 |
| BfaI | CTAG | 1 cut(s) | 233 |
| BisI | GCNGC | 1 cut(s) | 6 |
| BlsI | GCNGC | 1 cut(s) | 7 |
| BmgT120I | GGNCC | 1 cut(s) | 102 |
| BmsI | GCATC | 1 cut(s) | 254 |
| BsaAI | YACGTR | 1 cut(s) | 74 |
| BsaJI | CCNNGG | 1 cut(s) | 98 |
| BseDI | CCNNGG | 1 cut(s) | 98 |
| BseMII | CTCAG | 1 cut(s) | 195 |
| BseRI | GAGGAG | 1 cut(s) | 152 |
| BshFI | GGCC | 1 cut(s) | 104 |
| BsnI | GGCC | 1 cut(s) | 104 |
| Bsp143I | GATC | 2 cut(s) | 133, 211 |
| BspACI | CCGC | 1 cut(s) | 126 |
| BspANI | GGCC | 1 cut(s) | 104 |
| BspCNI | CTCAG | 1 cut(s) | 196 |
| BssECI | CCNNGG | 1 cut(s) | 98 |
| BssMI | GATC | 2 cut(s) | 133, 211 |
| BssNAI | GTATAC | 1 cut(s) | 201 |
| BssT1I | CCWWGG | 1 cut(s) | 98 |
| Bst1107I | GTATAC | 1 cut(s) | 201 |
| BstBAI | YACGTR | 1 cut(s) | 74 |
| BstDEI | CTNAG | 2 cut(s) | 54, 204 |
| BstEII | GGTNACC | 1 cut(s) | 177 |
| BstKTI | GATC | 2 cut(s) | 136, 214 |
| BstMBI | GATC | 2 cut(s) | 133, 211 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 242 |
| BstPI | GGTNACC | 1 cut(s) | 177 |
| BstSNI | TACGTA | 1 cut(s) | 74 |
| BstZ17I | GTATAC | 1 cut(s) | 201 |
| BsuRI | GGCC | 1 cut(s) | 104 |
| BtsIMutI | CAGTG | 1 cut(s) | 228 |
| Cfr13I | GGNCC | 1 cut(s) | 102 |
| Csp6I | GTAC | 1 cut(s) | 115 |
| CviAII | CATG | 1 cut(s) | 167 |
| CviJI | RGCY | 7 cut(s) | 5, 35, 45, 78, 104, 236, 260 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 35, 45, 78, 104, 236, 260 |
| CviQI | GTAC | 1 cut(s) | 115 |
| DdeI | CTNAG | 2 cut(s) | 54, 204 |
| DpnI | GATC | 2 cut(s) | 135, 213 |
| DpnII | GATC | 2 cut(s) | 133, 211 |
| Eco105I | TACGTA | 1 cut(s) | 74 |
| Eco130I | CCWWGG | 1 cut(s) | 98 |
| Eco57I | CTGAAG | 1 cut(s) | 46 |
| Eco91I | GGTNACC | 1 cut(s) | 177 |
| EcoO65I | GGTNACC | 1 cut(s) | 177 |
| EcoT14I | CCWWGG | 1 cut(s) | 98 |
| ErhI | CCWWGG | 1 cut(s) | 98 |
| FaeI | CATG | 1 cut(s) | 170 |
| FaiI | YATR | 5 cut(s) | 32, 81, 168, 201, 253 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 166, 198 |
| FatI | CATG | 1 cut(s) | 166 |
| FblI | GTMKAC | 1 cut(s) | 200 |
| Fnu4HI | GCNGC | 1 cut(s) | 6 |
| Fsp4HI | GCNGC | 1 cut(s) | 6 |
| FspBI | CTAG | 1 cut(s) | 233 |
| GluI | GCNGC | 1 cut(s) | 6 |
| HaeIII | GGCC | 1 cut(s) | 104 |
| Hin1II | CATG | 1 cut(s) | 170 |
| HinfI | GANTC | 1 cut(s) | 27 |
| Hpy166II | GTNNAC | 1 cut(s) | 201 |
| Hpy8I | GTNNAC | 1 cut(s) | 201 |
| HpyAV | CCTTC | 2 cut(s) | 70, 192 |
| HpyCH4IV | ACGT | 1 cut(s) | 73 |
| HpyCH4V | TGCA | 1 cut(s) | 245 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 242 |
| HpyF3I | CTNAG | 2 cut(s) | 54, 204 |
| HpySE526I | ACGT | 1 cut(s) | 73 |
| Hsp92II | CATG | 1 cut(s) | 170 |
| Kzo9I | GATC | 2 cut(s) | 133, 211 |
| LmnI | GCTCC | 1 cut(s) | 165 |
| LpnPI | CCDG | 2 cut(s) | 49, 122 |
| LweI | GCATC | 1 cut(s) | 254 |
| MaeI | CTAG | 1 cut(s) | 233 |
| MaeII | ACGT | 1 cut(s) | 73 |
| MaeIII | GTNAC | 4 cut(s) | 15, 69, 169, 177 |
| MalI | GATC | 2 cut(s) | 135, 213 |
| MboI | GATC | 2 cut(s) | 133, 211 |
| MboII | GAAGA | 1 cut(s) | 206 |
| MnlI | CCTC | 3 cut(s) | 120, 173, 199 |
| MslI | CAYNNNNRTG | 1 cut(s) | 191 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 242 |
| NdeII | GATC | 2 cut(s) | 133, 211 |
| NlaIII | CATG | 1 cut(s) | 170 |
| NmuCI | GTSAC | 2 cut(s) | 15, 169 |
| OliI | CACNNNNGTG | 1 cut(s) | 191 |
| PfeI | GAWTC | 1 cut(s) | 27 |
| PkrI | GCNGC | 1 cut(s) | 7 |
| Ppu21I | YACGTR | 1 cut(s) | 74 |
| PspEI | GGTNACC | 1 cut(s) | 177 |
| PspPI | GGNCC | 1 cut(s) | 102 |
| RsaI | GTAC | 1 cut(s) | 116 |
| RsaNI | GTAC | 1 cut(s) | 115 |
| RseI | CAYNNNNRTG | 1 cut(s) | 191 |
| SatI | GCNGC | 1 cut(s) | 6 |
| Sau3AI | GATC | 2 cut(s) | 133, 211 |
| Sau96I | GGNCC | 1 cut(s) | 102 |
| SetI | ASST | 7 cut(s) | 76, 100, 179, 184, 210, 262, 266 |
| SfaNI | GCATC | 1 cut(s) | 254 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 191 |
| SnaBI | TACGTA | 1 cut(s) | 74 |
| SsiI | CCGC | 1 cut(s) | 126 |
| SspMI | CTAG | 1 cut(s) | 233 |
| StyI | CCWWGG | 1 cut(s) | 98 |
| TaiI | ACGT | 1 cut(s) | 76 |
| TatI | WGTACW | 1 cut(s) | 114 |
| TfiI | GAWTC | 1 cut(s) | 27 |
| TscAI | CASTG | 1 cut(s) | 228 |
| TseFI | GTSAC | 2 cut(s) | 15, 169 |
| TseI | GCWGC | 1 cut(s) | 5 |
| Tsp45I | GTSAC | 2 cut(s) | 15, 169 |
| TspDTI | ATGAA | 1 cut(s) | 19 |
| TspRI | CASTG | 1 cut(s) | 228 |
| XmiI | GTMKAC | 1 cut(s) | 200 |
| XspI | CTAG | 1 cut(s) | 233 |