Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0007931

Physical Location & Seq

Genomic Coordinates Forward (+)

35133790 .. 35139850

Gene Structure 6061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1241400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3516 bp

ATGGACTCCAGAACTCGCCTTGACCATGTTCTCTTTCAACTCACTCCAACCAGAACAAGATGTGAACTGGTGATATTTGCTGCTGGTGGAGGTGCAAACGAGAAATTGGCTTCAGGGCTTCTAGAACCATTTCTTGGTCACTTGAAATGCGCCAAAGATCAGATCTCGAAAGGAGGGTACTCCATCACTCTTCGTCCTTCGGCCTCCGGTGCCTCCTGGTTCACCAAAGCCACTGTGCAGAGGTTCGTGAGATTTGTTAGCACACCAGAACTTCTTGAGAGATTTGTGACCATTGAGAGGGAGATATTGCAAATTGAGAATTCAATTCAATCGAGTGAACTGACTGAAGCGGATGGGAATCAAAATAAGTCAACTGCAATCAAGTTAAACAGTGAATCCTATGGAACCATTGATGCTGTGCCAGAAGAGAACTCCAAGATTCGTCTTCAACGTGTTTTGGAAACCCGGAAGGTAGTGCTATGCAAAGAGCAAGCGATGGCTTATGCTCGTGCACTAGTTGCTGGATTTGAACTGGACTATATAGATGATCTTTTAGCTTTTGCTGATACTTTTGGAGCTTCACGTTTAAGGGAAGCATGCATTAATTTCATAAATTTATACAAGCAAAAGAACGAAGATAGGCTTTGGATGGAAGAAATAGCAGCAATGCAGGCATGCGCTCAGCCACAACTGCCGTACTTGAGAACATCTGGAATAATTCTTGCTGGAGAAGATAATGACCCCAATCAGAATATCATGATAAATGTTAACCAAGGTATTCTCTCTGTTGGGAAGAATGGCTCACTCGACACATCAGTGTCAGAGTCAACAAGTCATGGAAGTCAGGACGCGAACCAAGATAATAACTTGCCAGCATTGGATAAGACGTCATCAACAGATGGGAAAGCTCAAGTACCAAACCCATGGCCAAACCATCCTCAGTACATGCACAATTTTCAAGGTCCTATATATCCACAAATGCACCCCTATCAAGGTTACCCTTTTCCCGGTATGCAGGTTCCGCCATATTATCCTGGGAATATGAAATGGCCTCCGAATGGGGAGGAATCTGGTCCTATTTTTGATCAGGAATCTGATGGTCGGAGGAATCGTAAATCTTATAGGAATAAAAAGAAACATTCTCATGAAAAAGTAATGGAAAATTCAGAAGAAGATGGATCCGGTGACAACACTGGCTCTAGTTACGAGAGTGAACCTGATGATCAGATGCATAAGCAAAGACACGGGAGAAAGTCCTCGAGAAAGGTTGTTATCCGAAATATCAATTACATAACCTCTATGAGGGATGGAGAAACAGGAAGTGCGTCTGAGGGAAATTCATCCGACGAGGATGGCTTTGTTGATGGGAAATCCATTAAACAGCAGGTAGAGGAAGCTGTTGGGTCATTTGAGAAGAGACATAAATCAACCTCACACCGCCACAAGAAACAAGGTGGGGGCAAGTTCCGTGGCACTGTGGATGATTCAAATGGTGGTGTTGCAAATACATACGAGGGGGAAAAACAAAATGACAACTGGAATGCTTTCCAAGACCTTCTCATGAGGGACAAGGATGAAAGTTCGTTTGCCACAGAACCACACAATGTACAGCTTGAGGAGGAATATTTTTCAAGTAAGAACTCTGGTGAAGGAAAAGTGACCAAGCAACGGGCAGATTCAAGTGAATTTTTTGTGGTGACAGAGAGGGGTTCAAGTAATGAGAGTAAAACACGCGTTCAATACTTCGAAGGTGACGAGAATGTTGGCCGGATTACCATGAAAGGAGATAGCACATATGAGGATGTATTATTTTCACGGAGAACTGAAGAATCTGGGAACAAATCCCATGATACTTTATCTGATTGTGTCAATGAATTGTACATCACCAAATGTCCTAAAGAAGGGGATTGGTTCATGAACAACCAAACAGATATATCAGCAAATCGGGATGTCAACAATGATCTGAAATTGTTTGATGGTGTTGACGCAATTCATGCTGAGAGAAATAAGAGAGATGTTCTAGGGGATGACTCTTTCATGGTTCGAGACCGATCAGTAGTTGATCAATCTGATTCTCAGTTCAGGACAGATATAAGCTTCGTCCCAGAGATCAATGGAGCTACTCAAGATGAATATGGCATGCAAGAAACTTCAAATGATAAACCTGAAGCGTATGTTGTCCATGAACCGGATGACCTTTACATGATGCTTGACCGTGGTTCAGCTGTGGAGCATGCTGTGGCACCATGGACTCCCGAAATGGATTATGAAACTATTGCTTCATCATTTGAAGCCAATAAAAAGAATCCCGACACTGAAGCGAGTGATTCCGTTGAAGTTAAGCAGCCTTCTGATGGTAAGGGCAGGAATGATAAAAGTAGTGGAATTCCTGGACAAAAAGCTAGGTCTAAAGTTGTAAATGGATCTTTGGCGAAAAGCAAGTCTGATATCATATCAAGAAGCAAGAAACCTGCTTCTGTAAGCAAAAGCACAGTCCACAAGAGCAAATCTGAAATGGAAGAAGAGCGGAGAAAGAGAATGGAGGAGTTACTGATTCAACGCCAGAAGAGAATTGCTGAAAGGAGTGGTTCTAATACAGAAACGTCTAAGAAGGCCCCAGTGGAAAATAAAGCTGCCAAAATTTCCATGACTAACACGAAGAATGAGACTAAGAAATCAGATAAGCCTGTCATCCGGAGTTCCACCATCGAACGCCTTGCAACTGCGCGAGTAGCTGAAAAGTTATCAACTTCGCCAAGTTCTGGTCAACCCAAAAAACAGAGCATCAAGGCAAATGGCGTGATTGCAACTGCATCATCACAGAAGGCAGCTGCTGCAGTGAATAAGAAACCCAGTCCAAACAAAGCCAAACCTTCGGATGCAAAAGATAACCTGAAGAATTCAAATGAAATAATTTCATCTAACTCTGATATCCAGGAAAAGGTTTGCATAGAATCCACAGAAGCACTGCCGGTTAAGTCAGAAGCTGCACTTGTAACTCAACCCACTACTGCCATCAATCATTTGGAAGAGACTAAGGAACTGCACGGCACATCTTCTGTTGAAAAGAATGAGGGAAATTTGATGGTACAAAGAGAGGCATTGGAGAACGGAAGCTGCAACGGGTATTCTCCCAATTTGGTTTCATCGGTACCTTATGAAGAGAAGGCTCAACAACTGAATCAGTTCACAGGTGATGTTGAAGAGTTGTCTAAAGAATCTCCAGTTCTAAGTGAAGGCAAAAGAAATTGTATCCCGGAAATGAGTGTATCTCCTCCTATTCTGGGATCCCCTAAGAAAGCTTCGATTGTTTCAGCCGTGAACATTGAAGAAAATGGTGCAAGAACTAAGAATTTACCAGTTTCTGAGATTTCTGACATAGCAATCTCTACTCCACCAAGTGATGAAACACTCGCGGAACAACTCCACTCCAGGAAGAAGTGGAACAGCGACGAGAACTCTTCTAAAGCTGCAAAAGGGTTTAAGAAGCTTCTATTGTTTGGGCGGAAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015994 GO:0015995 GO:0016020 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0046283 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051186 GO:0051188 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0071944 GO:0080090 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1172

Amino Acids

129.66

Weight (kDa)

5.79

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27430 AT4G27430
fragaria_vesca	FvH4_3g20630 FvH4_3g20630 FvH4_3g20630 FvH4_3g20630 FvH4_3g20630
malus_domestica	MD03G1223400.v1.1 MD11G1241400.v1.1
prunus_persica	Prupe.4G186100_v2.0.a1 Prupe.4G186100_v2.0.a1
pyrus_communis	pycom03g17170 pycom11g21290 pycom11g21300
rosa_chinensis	RchiOBHm_Chr5g0034651
rosa_laevigata	RLG00000033565
rosa_multiflora	Rmu_sc0002460.1_g000082
rosa_roxburghii	Rroxscaffold_1G00045660
rosa_rugosa	Rorug05G0147400
rosa_samantha	Rh5AG239600 Rh5BG240300 Rh5CG270700 Rh5DG248500
rosa_wichuraiana	Rw5G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	890
Acc36I	ACCTGC	3 cut(s)	1006, 1375, 2479
Acc65I	GGTACC	1 cut(s)	3151
AccB1I	GGYRCC	3 cut(s)	209, 2242, 3151
AccB7I	CCANNNNNTGG	2 cut(s)	134, 2762
AccBSI	CCGCTC	1 cut(s)	2527
AccII	CGCG	4 cut(s)	851, 1734, 2728, 3416
AccIII	TCCGGA	1 cut(s)	2694
AciI	CCGC	6 cut(s)	350, 1022, 1438, 2527, 3416, 3505
AclWI	GGATC	5 cut(s)	1173, 1186, 2431, 3282, 3295
AcoI	YGGCCR	2 cut(s)	926, 1765
AcuI	CTGAAG	6 cut(s)	96, 366, 1845, 2187, 2337, 2915
AcyI	GRCGYC	1 cut(s)	887
AdeI	CACNNNGTG	1 cut(s)	3401
AfaI	GTAC	8 cut(s)	179, 698, 915, 944, 1608, 1880, 3090, 3153
AflIII	ACRYGT	2 cut(s)	451, 1732
AhlI	ACTAGT	1 cut(s)	514
AjnI	CCWGG	5 cut(s)	215, 1033, 2389, 2934, 3431
AjuI	GAANNNNNNNTTGG	2 cut(s)	117, 149
AleI	CACNNNNGTG	1 cut(s)	815
Alw21I	GWGCWC	1 cut(s)	514
Alw26I	GTCTC	4 cut(s)	1411, 2040, 2660, 3026
Alw44I	GTGCAC	1 cut(s)	510
AlwI	GGATC	5 cut(s)	1173, 1186, 2431, 3282, 3295
AlwNI	CAGNNNCTG	3 cut(s)	2834, 2987, 3365
Ama87I	CYCGRG	1 cut(s)	1258
Aor13HI	TCCGGA	1 cut(s)	2694
AoxI	GGCC	5 cut(s)	201, 926, 1049, 1765, 2613
ApaLI	GTGCAC	1 cut(s)	510
ArsI	GACNNNNNNTTYG	4 cut(s)	2426, 2458, 2478, 2510
AseI	ATTAAT	1 cut(s)	603
Asp700I	GAANNNNTTC	3 cut(s)	129, 1544, 3185
Asp718I	GGTACC	1 cut(s)	3151
AspLEI	GCGC	3 cut(s)	152, 680, 2728
AspS9I	GGNCC	3 cut(s)	962, 1073, 2614
AsuC2I	CCSGG	3 cut(s)	466, 1008, 3257
AsuHPI	GGTGA	8 cut(s)	82, 214, 1196, 1658, 1708, 1763, 1876, 3206
AsuII	TTCGAA	1 cut(s)	1746
AvaI	CYCGRG	1 cut(s)	1258
AvaII	GGWCC	2 cut(s)	962, 1073
BaeGI	GKGCMC	1 cut(s)	514
BalI	TGGCCA	1 cut(s)	928
BamHI	GGATCC	2 cut(s)	1178, 3287
BanI	GGYRCC	3 cut(s)	209, 2242, 3151
BauI	CACGAG	1 cut(s)	507
BbsI	GAAGAC	1 cut(s)	437
Bbv12I	GWGCWC	1 cut(s)	514
BceAI	ACGGC	3 cut(s)	679, 3064, 3302
BcgI	CGANNNNNNTGC	2 cut(s)	2699, 2733
BciT130I	CCWGG	5 cut(s)	217, 1035, 2391, 2936, 3433
BciVI	GTATCC	1 cut(s)	3263
BclI	TGATCA	3 cut(s)	1084, 1222, 2062
BcnI	CCSGG	3 cut(s)	466, 1008, 3257
BcoDI	GTCTC	4 cut(s)	1411, 2040, 2660, 3026
BcuI	ACTAGT	1 cut(s)	514
BfaI	CTAG	5 cut(s)	122, 515, 1200, 2021, 2403
BfmI	CTRYAG	1 cut(s)	2835
BfuAI	ACCTGC	3 cut(s)	1006, 1375, 2479
BfuI	GTATCC	1 cut(s)	3263
BglII	AGATCT	1 cut(s)	162
BlpI	GCTNAGC	1 cut(s)	681
Bme1390I	CCNGG	8 cut(s)	217, 466, 1008, 1035, 2391, 2936, 3257, 3433
Bme18I	GGWCC	2 cut(s)	962, 1073
BmeT110I	CYCGRG	1 cut(s)	1258
BmgT120I	GGNCC	3 cut(s)	962, 1073, 2614
BmiI	GGNNCC	8 cut(s)	211, 406, 1020, 1180, 2244, 2616, 3153, 3289
BmrFI	CCNGG	8 cut(s)	217, 466, 1008, 1035, 2391, 2936, 3257, 3433
BmrI	ACTGGG	2 cut(s)	2612, 2847
BmsI	GCATC	6 cut(s)	403, 1218, 2196, 2793, 2822, 2869
BmuI	ACTGGG	2 cut(s)	2612, 2847
BpiI	GAAGAC	1 cut(s)	437
BplI	GAGNNNNNCTC	2 cut(s)	3256, 3288
BpmI	CTGGAG	3 cut(s)	747, 3207, 3415
Bpu1102I	GCTNAGC	1 cut(s)	681
Bpu14I	TTCGAA	1 cut(s)	1746
BpuEI	CTTGAG	5 cut(s)	296, 721, 894, 1634, 2109
BpuMI	CCSGG	3 cut(s)	466, 1008, 3257
BsaBI	GATNNNNATC	1 cut(s)	357
BsaHI	GRCGYC	1 cut(s)	887
BsaI	GGTCTC	1 cut(s)	2040
BsaJI	CCNNGG	6 cut(s)	772, 923, 1034, 1468, 2215, 2246
BsaWI	WCCGGW	4 cut(s)	206, 1181, 2188, 2694
BsaXI	ACNNNNNCTCC	2 cut(s)	1096, 1126
Bse118I	RCCGGY	1 cut(s)	2971
Bse1I	ACTGG	8 cut(s)	72, 537, 1198, 1541, 2618, 2853, 3224, 3359
Bse3DI	GCAATG	1 cut(s)	672
Bse8I	GATNNNNATC	1 cut(s)	357
BseAI	TCCGGA	1 cut(s)	2694
BseBI	CCWGG	5 cut(s)	217, 1035, 2391, 2936, 3433
BseDI	CCNNGG	6 cut(s)	772, 923, 1034, 1468, 2215, 2246
BseJI	GATNNNNATC	1 cut(s)	357
BseMI	GCAATG	1 cut(s)	672
BseMII	CTCAG	6 cut(s)	695, 953, 1320, 1989, 2090, 3357
BseNI	ACTGG	8 cut(s)	72, 537, 1198, 1541, 2618, 2853, 3224, 3359
BseRI	GAGGAG	3 cut(s)	1631, 2558, 3264
BseSI	GKGCMC	1 cut(s)	514
BsgI	GTGCAG	3 cut(s)	257, 2973, 3029
Bsh1236I	CGCG	4 cut(s)	851, 1734, 2728, 3416
BshFI	GGCC	5 cut(s)	203, 928, 1051, 1767, 2615
BshNI	GGYRCC	3 cut(s)	209, 2242, 3151
BsiHKAI	GWGCWC	1 cut(s)	514
BsiHKCI	CYCGRG	1 cut(s)	1258
BsiSI	CCGG	9 cut(s)	207, 466, 1008, 1182, 1768, 2189, 2695, 2972, 3257
BslFI	GGGAC	2 cut(s)	1580, 2087
BsmAI	GTCTC	4 cut(s)	1411, 2040, 2660, 3026
BsmFI	GGGAC	2 cut(s)	1580, 2087
BsmI	GAATGC	1 cut(s)	1546
BsnI	GGCC	5 cut(s)	203, 928, 1051, 1767, 2615
Bso31I	GGTCTC	1 cut(s)	2040
BsoBI	CYCGRG	1 cut(s)	1258
Bsp119I	TTCGAA	1 cut(s)	1746
Bsp1286I	GDGCHC	1 cut(s)	514
Bsp13I	TCCGGA	1 cut(s)	2694
Bsp1407I	TGTACA	2 cut(s)	1606, 1878
Bsp1720I	GCTNAGC	1 cut(s)	681
Bsp19I	CCATGG	2 cut(s)	923, 2246
BspACI	CCGC	6 cut(s)	350, 1022, 1438, 2527, 3416, 3505
BspANI	GGCC	5 cut(s)	203, 928, 1051, 1767, 2615
BspCNI	CTCAG	6 cut(s)	694, 952, 1321, 1990, 2089, 3358
BspEI	TCCGGA	1 cut(s)	2694
BspFNI	CGCG	4 cut(s)	851, 1734, 2728, 3416
BspHI	TCATGA	4 cut(s)	756, 1144, 1560, 1914
BspLI	GGNNCC	8 cut(s)	211, 406, 1020, 1180, 2244, 2616, 3153, 3289
BspMAI	CTGCAG	1 cut(s)	2839
BspMI	ACCTGC	3 cut(s)	1006, 1375, 2479
BspPI	GGATC	5 cut(s)	1173, 1186, 2431, 3282, 3295
BspQI	GCTCTTC	2 cut(s)	2517, 3503
BspT104I	TTCGAA	1 cut(s)	1746
BspT107I	GGYRCC	3 cut(s)	209, 2242, 3151
BspTNI	GGTCTC	1 cut(s)	2040
BsrBI	CCGCTC	1 cut(s)	2527
BsrDI	GCAATG	1 cut(s)	672
BsrFI	RCCGGY	1 cut(s)	2971
BsrGI	TGTACA	2 cut(s)	1606, 1878
BsrI	ACTGG	8 cut(s)	72, 537, 1198, 1541, 2618, 2853, 3224, 3359
BssAI	RCCGGY	1 cut(s)	2971
BssECI	CCNNGG	6 cut(s)	772, 923, 1034, 1468, 2215, 2246
BssNI	GRCGYC	1 cut(s)	887
BssSI	CACGAG	1 cut(s)	507
BssT1I	CCWWGG	3 cut(s)	772, 923, 2246
Bst2BI	CACGAG	1 cut(s)	507
Bst2UI	CCWGG	5 cut(s)	217, 1035, 2391, 2936, 3433
Bst4CI	ACNGT	5 cut(s)	235, 392, 1477, 2216, 2494
BstACI	GRCGYC	1 cut(s)	887
BstAPI	GCANNNNNTGC	3 cut(s)	518, 1994, 2834
BstAUI	TGTACA	2 cut(s)	1606, 1878
BstBI	TTCGAA	1 cut(s)	1746
BstC8I	GCNNGC	7 cut(s)	492, 598, 672, 676, 873, 2141, 2235
BstDSI	CCRYGG	4 cut(s)	923, 1468, 2215, 2246
BstEII	GGTNACC	1 cut(s)	995
BstENI	CCTNNNNNAGG	2 cut(s)	1300, 1899
BstFNI	CGCG	4 cut(s)	851, 1734, 2728, 3416
BstHHI	GCGC	3 cut(s)	152, 680, 2728
BstMAI	GTCTC	4 cut(s)	1411, 2040, 2660, 3026
BstMWI	GCNNNNNNNGC	8 cut(s)	209, 518, 671, 691, 1021, 1994, 2732, 2834
BstNI	CCWGG	5 cut(s)	217, 1035, 2391, 2936, 3433
BstNSI	RCATGY	5 cut(s)	600, 678, 949, 2143, 2237
BstPI	GGTNACC	1 cut(s)	995
BstSCI	CCNGG	8 cut(s)	215, 464, 1006, 1033, 2389, 2934, 3255, 3431
BstSFI	CTRYAG	1 cut(s)	2835
BstSLI	GKGCMC	1 cut(s)	514
BstUI	CGCG	4 cut(s)	851, 1734, 2728, 3416
BstV2I	GAAGAC	1 cut(s)	437
BstX2I	RGATCY	4 cut(s)	162, 1178, 2423, 3287
BstXI	CCANNNNNNTGG	1 cut(s)	924
BstYI	RGATCY	4 cut(s)	162, 1178, 2423, 3287
BsuI	GTATCC	1 cut(s)	3263
BsuRI	GGCC	5 cut(s)	203, 928, 1051, 1767, 2615
BtgI	CCRYGG	4 cut(s)	923, 1468, 2215, 2246
BtgZI	GCGATG	1 cut(s)	509
BtsI	GCAGTG	2 cut(s)	2844, 2966
BtsIMutI	CAGTG	9 cut(s)	231, 397, 822, 1191, 1473, 2313, 2625, 2844, 2966
BveI	ACCTGC	3 cut(s)	1006, 1375, 2479
Cac8I	GCNNGC	7 cut(s)	492, 598, 672, 676, 873, 2141, 2235
CaiI	CAGNNNCTG	3 cut(s)	2834, 2987, 3365
CciI	TCATGA	4 cut(s)	756, 1144, 1560, 1914
CfoI	GCGC	3 cut(s)	152, 680, 2728
Cfr10I	RCCGGY	1 cut(s)	2971
Cfr13I	GGNCC	3 cut(s)	962, 1073, 2614
CseI	GACGC	3 cut(s)	857, 1314, 1994
Csp6I	GTAC	8 cut(s)	178, 697, 914, 943, 1607, 1879, 3089, 3152
CspCI	CAANNNNNGTGG	2 cut(s)	1450, 1485
CviQI	GTAC	8 cut(s)	178, 697, 914, 943, 1607, 1879, 3089, 3152
DraIII	CACNNNGTG	1 cut(s)	3401
EaeI	YGGCCR	2 cut(s)	926, 1765
EciI	GGCGGA	1 cut(s)	1011
Eco130I	CCWWGG	3 cut(s)	772, 923, 2246
Eco31I	GGTCTC	1 cut(s)	2040
Eco32I	GATATC	2 cut(s)	2449, 2932
Eco47I	GGWCC	2 cut(s)	962, 1073
Eco57I	CTGAAG	6 cut(s)	96, 366, 1845, 2187, 2337, 2915
Eco88I	CYCGRG	1 cut(s)	1258
Eco91I	GGTNACC	1 cut(s)	995
EcoNI	CCTNNNNNAGG	2 cut(s)	1300, 1899
EcoO109I	RGGNCCY	2 cut(s)	962, 2614
EcoO65I	GGTNACC	1 cut(s)	995
EcoRI	GAATTC	3 cut(s)	319, 2385, 2899
EcoRII	CCWGG	5 cut(s)	215, 1033, 2389, 2934, 3431
EcoRV	GATATC	2 cut(s)	2449, 2932
EcoT14I	CCWWGG	3 cut(s)	772, 923, 2246
EcoT22I	ATGCAT	2 cut(s)	602, 1233
ErhI	CCWWGG	3 cut(s)	772, 923, 2246
FalI	AAGNNNNNCTT	4 cut(s)	627, 659, 2976, 3008
FaqI	GGGAC	2 cut(s)	1580, 2087
FauNDI	CATATG	1 cut(s)	1795
FbaI	TGATCA	3 cut(s)	1084, 1222, 2062
FspBI	CTAG	5 cut(s)	122, 515, 1200, 2021, 2403
GlaI	GCGC	3 cut(s)	151, 679, 2727
GsuI	CTGGAG	3 cut(s)	747, 3207, 3415
HaeIII	GGCC	5 cut(s)	203, 928, 1051, 1767, 2615
HapII	CCGG	9 cut(s)	207, 466, 1008, 1182, 1768, 2189, 2695, 2972, 3257
HgaI	GACGC	3 cut(s)	857, 1314, 1994
HhaI	GCGC	3 cut(s)	152, 680, 2728
Hin1I	GRCGYC	1 cut(s)	887
Hin6I	GCGC	3 cut(s)	150, 678, 2726
HinP1I	GCGC	3 cut(s)	150, 678, 2726
HincII	GTYRAC	6 cut(s)	372, 769, 828, 1954, 1984, 2768
HindII	GTYRAC	6 cut(s)	372, 769, 828, 1954, 1984, 2768
HindIII	AAGCTT	3 cut(s)	2095, 3300, 3488
HpaI	GTTAAC	1 cut(s)	769
HpaII	CCGG	9 cut(s)	207, 466, 1008, 1182, 1768, 2189, 2695, 2972, 3257
HphI	GGTGA	8 cut(s)	82, 214, 1196, 1658, 1708, 1763, 1876, 3206
Hpy99I	CGWCG	2 cut(s)	1349, 3455
HpyCH4III	ACNGT	5 cut(s)	235, 392, 1477, 2216, 2494
HpyCH4IV	ACGT	4 cut(s)	451, 583, 887, 2603
HpyF10VI	GCNNNNNNNGC	8 cut(s)	209, 518, 671, 691, 1021, 1994, 2732, 2834
HpySE526I	ACGT	4 cut(s)	451, 583, 887, 2603
Hsp92I	GRCGYC	1 cut(s)	887
HspAI	GCGC	3 cut(s)	150, 678, 2726
Kpn2I	TCCGGA	1 cut(s)	2694
KpnI	GGTACC	1 cut(s)	3155
Ksp22I	TGATCA	3 cut(s)	1084, 1222, 2062
KspAI	GTTAAC	1 cut(s)	769
LguI	GCTCTTC	2 cut(s)	2517, 3503
LmnI	GCTCC	3 cut(s)	575, 2117, 2230
LweI	GCATC	6 cut(s)	403, 1218, 2196, 2793, 2822, 2869
MaeI	CTAG	5 cut(s)	122, 515, 1200, 2021, 2403
MaeII	ACGT	4 cut(s)	451, 583, 887, 2603
MbiI	CCGCTC	1 cut(s)	2527
MflI	RGATCY	4 cut(s)	162, 1178, 2423, 3287
MhlI	GDGCHC	1 cut(s)	514
MlsI	TGGCCA	1 cut(s)	928
MluI	ACGCGT	1 cut(s)	1732
MluNI	TGGCCA	1 cut(s)	928
MlyI	GAGTC	3 cut(s)	833, 2024, 2245
MmeI	TCCRAC	3 cut(s)	71, 1082, 1368
Mox20I	TGGCCA	1 cut(s)	928
Mph1103I	ATGCAT	2 cut(s)	602, 1233
MroI	TCCGGA	1 cut(s)	2694
MroXI	GAANNNNTTC	3 cut(s)	129, 1544, 3185
MscI	TGGCCA	1 cut(s)	928
MseI	TTAA	8 cut(s)	386, 587, 603, 768, 1377, 2340, 2976, 3483
MslI	CAYNNNNRTG	2 cut(s)	815, 1143
Msp20I	TGGCCA	1 cut(s)	928
MspA1I	CMGCKG	2 cut(s)	2225, 2831
MspI	CCGG	9 cut(s)	207, 466, 1008, 1182, 1768, 2189, 2695, 2972, 3257
MspR9I	CCNGG	8 cut(s)	217, 466, 1008, 1035, 2391, 2936, 3257, 3433
Mva1269I	GAATGC	1 cut(s)	1546
MvaI	CCWGG	5 cut(s)	217, 1035, 2391, 2936, 3433
MvnI	CGCG	4 cut(s)	851, 1734, 2728, 3416
MwoI	GCNNNNNNNGC	8 cut(s)	209, 518, 671, 691, 1021, 1994, 2732, 2834
NciI	CCSGG	3 cut(s)	466, 1008, 3257
NcoI	CCATGG	2 cut(s)	923, 2246
NdeI	CATATG	1 cut(s)	1795
NlaIV	GGNNCC	8 cut(s)	211, 406, 1020, 1180, 2244, 2616, 3153, 3289
NmuCI	GTSAC	6 cut(s)	137, 286, 1184, 1657, 1696, 1751
NsiI	ATGCAT	2 cut(s)	602, 1233
NspI	RCATGY	5 cut(s)	600, 678, 949, 2143, 2237
NspV	TTCGAA	1 cut(s)	1746
OliI	CACNNNNGTG	1 cut(s)	815
PaeI	GCATGC	4 cut(s)	600, 678, 2143, 2237
PaeR7I	CTCGAG	1 cut(s)	1258
PagI	TCATGA	4 cut(s)	756, 1144, 1560, 1914
PciSI	GCTCTTC	2 cut(s)	2517, 3503
PcsI	WCGNNNNNNNCGW	3 cut(s)	448, 1108, 1752
PctI	GAATGC	1 cut(s)	1546
PdmI	GAANNNNTTC	3 cut(s)	129, 1544, 3185
PflMI	CCANNNNNTGG	2 cut(s)	134, 2762
PfoI	TCCNGGA	4 cut(s)	2389, 2934, 3255, 3431
PleI	GAGTC	3 cut(s)	832, 2024, 2245
PpsI	GAGTC	3 cut(s)	832, 2024, 2245
PpuMI	RGGWCCY	1 cut(s)	962
PshBI	ATTAAT	1 cut(s)	603
Psp5II	RGGWCCY	1 cut(s)	962
Psp6I	CCWGG	5 cut(s)	215, 1033, 2389, 2934, 3431
PspEI	GGTNACC	1 cut(s)	995
PspGI	CCWGG	5 cut(s)	215, 1033, 2389, 2934, 3431
PspN4I	GGNNCC	8 cut(s)	211, 406, 1020, 1180, 2244, 2616, 3153, 3289
PspPI	GGNCC	3 cut(s)	962, 1073, 2614
PspPPI	RGGWCCY	1 cut(s)	962
PstI	CTGCAG	1 cut(s)	2839
PstNI	CAGNNNCTG	3 cut(s)	2834, 2987, 3365
PsuI	RGATCY	4 cut(s)	162, 1178, 2423, 3287
PvuII	CAGCTG	2 cut(s)	2225, 2831
RsaI	GTAC	8 cut(s)	179, 698, 915, 944, 1608, 1880, 3090, 3153
RsaNI	GTAC	8 cut(s)	178, 697, 914, 943, 1607, 1879, 3089, 3152
RseI	CAYNNNNRTG	2 cut(s)	815, 1143
SapI	GCTCTTC	2 cut(s)	2517, 3503
SaqAI	TTAA	8 cut(s)	386, 587, 603, 768, 1377, 2340, 2976, 3483
Sau96I	GGNCC	3 cut(s)	962, 1073, 2614
SchI	GAGTC	3 cut(s)	833, 2024, 2245
ScrFI	CCNGG	8 cut(s)	217, 466, 1008, 1035, 2391, 2936, 3257, 3433
SduI	GDGCHC	1 cut(s)	514
SfaNI	GCATC	6 cut(s)	403, 1218, 2196, 2793, 2822, 2869
SfcI	CTRYAG	1 cut(s)	2835
Sfr274I	CTCGAG	1 cut(s)	1258
SfuI	TTCGAA	1 cut(s)	1746
SinI	GGWCC	2 cut(s)	962, 1073
SlaI	CTCGAG	1 cut(s)	1258
SmiMI	CAYNNNNRTG	2 cut(s)	815, 1143
SmlI	CTYRAG	6 cut(s)	275, 700, 909, 1258, 1613, 2124
SmoI	CTYRAG	6 cut(s)	275, 700, 909, 1258, 1613, 2124
SpeI	ACTAGT	1 cut(s)	514
SphI	GCATGC	4 cut(s)	600, 678, 2143, 2237
SsiI	CCGC	6 cut(s)	350, 1022, 1438, 2527, 3416, 3505
SspI	AATATT	1 cut(s)	1625
SspMI	CTAG	5 cut(s)	122, 515, 1200, 2021, 2403
StyD4I	CCNGG	8 cut(s)	215, 464, 1006, 1033, 2389, 2934, 3255, 3431
StyI	CCWWGG	3 cut(s)	772, 923, 2246
TaaI	ACNGT	5 cut(s)	235, 392, 1477, 2216, 2494
TaiI	ACGT	4 cut(s)	454, 586, 890, 2606
TaqI	TCGA	8 cut(s)	167, 332, 807, 1259, 1746, 2044, 2709, 3305
TaqII	GACCGA	1 cut(s)	2064
TatI	WGTACW	3 cut(s)	942, 1606, 1878
Tru1I	TTAA	8 cut(s)	386, 587, 603, 768, 1377, 2340, 2976, 3483
Tru9I	TTAA	8 cut(s)	386, 587, 603, 768, 1377, 2340, 2976, 3483
TscAI	CASTG	9 cut(s)	238, 397, 822, 1198, 1480, 2320, 2625, 2844, 2973
TseFI	GTSAC	6 cut(s)	137, 286, 1184, 1657, 1696, 1751
Tsp45I	GTSAC	6 cut(s)	137, 286, 1184, 1657, 1696, 1751
TspGWI	ACGGA	4 cut(s)	1457, 1831, 2320, 3126
TspRI	CASTG	9 cut(s)	238, 397, 822, 1198, 1480, 2320, 2625, 2844, 2973
Van91I	CCANNNNNTGG	2 cut(s)	134, 2762
VneI	GTGCAC	1 cut(s)	510
VpaK11BI	GGWCC	2 cut(s)	962, 1073
VspI	ATTAAT	1 cut(s)	603
XagI	CCTNNNNNAGG	2 cut(s)	1300, 1899
XbaI	TCTAGA	1 cut(s)	121
XceI	RCATGY	5 cut(s)	600, 678, 949, 2143, 2237
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3022
XhoI	CTCGAG	1 cut(s)	1258
XmnI	GAANNNNTTC	3 cut(s)	129, 1544, 3185
XspI	CTAG	5 cut(s)	122, 515, 1200, 2021, 2403
ZraI	GACGTC	1 cut(s)	888
Zsp2I	ATGCAT	2 cut(s)	602, 1233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.