Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007931

Physical Location & Seq

Genomic Coordinates Forward (+)

64817511 .. 64823557

Gene Structure 6047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00045660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3597 bp

ATGGACTCCAGGACTCGCCTTGATCATGTTCTCTTCCAACTCACTCCAACCAGAACAAGATGTGAACTTGTAATGTTTGCTGCTGGTGGTGGAAATGAGAAATTGGCTTCAGGGTTTTTGGAACCATTTCTTACACATTTGAAATGTGCAAAGGATCAGATTTCCAAAGGAGGGTACTCCATTACCCTCCGTCCTTCCGGCTCCGGTGCCTCTTGGTTCACCAAAGCCACTCTCCAGAGGTTTGTGAGATTTGTTAGCACACCAGAAGTTCTTGAGAGATTTGTGACTATTGAGAAAGAGATTTTGCAGATTGAGAATTCGCTTCAATCAAGTGAACTCACCGAGGCAGAAGCTGATGGGAGTAAATCAACGGCCATTAAGCCAAACAGTGAATCCAATGAGACCATTGATGCTGTGCCAGAAGAGAATTCCAAGATTCGTCTTCAACGTGTTCTGGAAACTCGGAAGGTAGTACTCTGCAAAGAGCAAGCAATGGCTTATGCTCGTGCTTTAGTTGCTGGATTTGAACTGGACTATATTGATGATCTTTTATCTTTTGCTGATACTTTTGGAGCTTCGCGATTAAGGGAAGCATGCATAAATTTCATAAATCTATACAAGCAAAAGAACGAAGATAGGTTTTGGATGGAAGAAATAGCAGCAATGCAGGCACTCTCTCAGCCACAACTGCCATACTTGGCAACATCAGGAATCATTCTTGCTGGAGAAGATAATGAGCCCAGTCAGAATCTTAACCAAAGTATTCTCTCCATTGGGAAGAATGGTTCACTAGATACTTCAGTGTCTGATTCAACTGCAAGTCATGGAAGTCTGGATGCGAACCAAGATGGGAAAGCTCAAGTACCAAACCCATGGCCAAACCATCTTCCGCAGTACATGCAAACTTTTCAAGGTCCTGCATTTCAACAAATGCACCCCTATCAAGGTTACATGTTCCCTGGTATGCAGGTTCCACCATACTATCCAGGGAATATGAAATGGCCTCCAAATGTGGAAGACTCTGGCTTTATGTTTGATCAGGAATCTGATGACCGTTGGAAGCATAAATCTCATAGAACTAAAAAGAAACATTCTCATGAAAGAGCACTGGAAACTTCAGAACAAGATGGATCCAACGAAAACACTGGTTCAAGTTATGAAAGTGAATCTGATGATCATTTCCAGAATGGTAAAAGGCACTCTGGAAGAGAGCAGCAGCATCGGAAAAAGCATGGGCAGAAGTCCTCAAGAAAGGTTGTTATCCGCAATATCAATTACATAAGCTCTAAGAGGGACGGAGAAAGTGGGTCTGAGGGAAATTCATCTGATGAGGATGGATACATTGATGGGAAATCCATTAAACAGCAGGTAGAGGAAGCTGTTGGTTCATTGGAGAAGAGACATAAATCAAGCTCACGTCGTCACCAAAAACAAGGTGGAAGCAAGTTGCATGGCAGTGTAGATGATTCAAATGGAGAGGAACTTAAAAATGCAGATGCAAATAAACATGAGGGAGAAAAGCAAAATGACAACTGGAGTGCTTTCCAGAATCTTCTCATGAGGGACGAGGATCCAAGTTCTTTCAGTACAGAATCACATAATGCGCGGATTGCGGATGAATATCTTTCAAGTAATAACACTGGTCAAGGACGATCATTTGAATTTAACCAGGAACATGAGAAAGTAACGAAGCAAAGAGCAGTTTCAAGTGAGTATTTGATGGTGACAGAGAGGGATACAGGAAATGAGAGTAAAACTCACGTCCCATACTTCGAAGGTGGCGATGATGTTGGTCGCATTACCAAAAAAAATGGCGCATACGAGGATTTATTATTTTCACAGAGAAATGAAGAGTCAAGGATCAATTCCCATGATACTCTATCTGATTGCGCAAATGAATTGTACAAAACCAAATGTCCAAAAGAAGGGGATTGGTTTATCAGCAACCAACCAGATAATCAGGTTGCCAGCAATGATCTGAAATTGCTTGATGGTGTTTATGCTTCATCAGCGTTGGCTATGGACAGTGTTCATGCTGAGAAAAAGAGAGAAGTTCTAGTGGATGATTCTTTCATGGTTCAAGACCGATCAACAGTTGATCATCAATCTGATTCTCAGTTCAGGACCAACTTAAGCTTCGTCCCAGAATACACTGGAGCTACTCAAAATGAATATGGCAAGCCAGAGGTTTTAAATGATAAGCCTGCAGCCTCTAGCATGCATGAACCAGATGACCTATACATGGTGCTTGATCGCGGTTCAGCTGTGGACCAGGATGTGGCACCATGGAATCCAGAGATGGACTACGAACTTAATGCTTCATCACTTGAAGCCAGTGAAAAGAATCCTGGCATTGAAACAACTGATTCTATTGGTGATGAGCAGCCTTCTAACAGTAAGGGCAAGAATGCTAAAAACAGTGGAACTCCTGGAGGAAAAGTTCCGACCAAAGAAGCAAGGTCTAAAGTTGCAAATGGATCTTTGGGGAAGAGCAGATATGATATCTTATCCAGAAGTAAGAAACCTTCTTCTGTAAGCAAAAGCACAGTCCACAAAAGCAAATTTGAAAAGGATGAAGAACAAAGAAAGAGAATGGAAGAGTTAGTAATTGAACGCCAGAAGAGAATTGCTGAGAGGAGTGCTGCTCGTGGTTCTAATACTGCAACATCTAAGAAAGCCCCAGCAGAAATTAAAAATGCCAAAACCACCATGACTAAGACAAAGAATGATAAGCTTAAAGTTCAGTCCCCAACCCAAGAGACCAAGAAAGCAGAGAAGCCTATCATGCGGAGTTCCACCATTGATCGCCTTGCAGCTGCAAGGGTAACTGAGAAGTTGCCAACAACCATGCCGAGTTCTGGCCAACCCAAAAAGCAAACAATCAAGGCAAATGGGGTAGCTGCAGCTGGTGCTGAGAACAAGAAAGCAAGTCCAAACAAAACCAAACCATCAGTAGCAAAAGACGGCCTGAAGAATTTAAGTAAGTCATCCAACTCTGATGTCCAGGAAAAAGTGTGCATTGAAGCCACAGAAGCACTGCCAGTTGAGCCGACACCTAAGGCTGTACCTGCAACTCAACCTACTAATGCCATCATTGAGTTGGAAGAGACTAAGCAACTCCATAGTACACCTTCCATTGAAAAGAATGAGGGAAACTTGGTGTTCCAAAGAGAGGCATTAGATAAAGGAAGCTGCAATGAGCATTCACCTGCACCTATTGAAGAGAATTCTACGCAGCCTGATCAGTTAACAGCTAATGCTGAAGAATTACCTCAGGAATCTCCAGTTCTTAGTGAAGACAAAAGAAACTTCATTATTGAACAGAGTGTAGAACCTCATATTCTGGAATCACCTACCAAACCTTCGATTGTTTCAGCTGTGAACATTGATGAAAATGGTGATATAACCAAAGGTTTTCCAGTCTCTACTGAAATTTCTGAGATAGAAATTTCTACCCCACCATATAACGAAACAGCCTCAGATCACCTCCACTCCAGGAAGAAATGGAATGGTGATGAAAACTCTCCTAGAGCTGCCAAAGGGTTTAGGAAACTTCTGTTGTTTGGAAGAAAGAGCAAGAACACTCCCGTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015994 GO:0015995 GO:0016020 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0046283 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051186 GO:0051188 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0071944 GO:0080090 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1198

Amino Acids

133.01

Weight (kDa)

5.87

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27430 AT4G27430
fragaria_vesca	FvH4_3g20630 FvH4_3g20630 FvH4_3g20630 FvH4_3g20630 FvH4_3g20630
malus_domestica	MD03G1223400.v1.1 MD11G1241400.v1.1
prunus_persica	Prupe.4G186100_v2.0.a1 Prupe.4G186100_v2.0.a1
pyrus_communis	pycom03g17170 pycom11g21290 pycom11g21300
rosa_chinensis	RchiOBHm_Chr5g0034651
rosa_laevigata	RLG00000033565
rosa_multiflora	Rmu_sc0002460.1_g000082
rosa_roxburghii	Rroxscaffold_1G00045660
rosa_rugosa	Rorug05G0147400
rosa_samantha	Rh5AG239600 Rh5BG240300 Rh5CG270700 Rh5DG248500
rosa_wichuraiana	Rw5G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	3217
Acc16I	TGCGCA	1 cut(s)	1891
Acc36I	ACCTGC	4 cut(s)	958, 1357, 3076, 3217
AccB1I	GGYRCC	2 cut(s)	206, 2281
AccB7I	CCANNNNNTGG	1 cut(s)	2278
AccII	CGCG	3 cut(s)	580, 1606, 2256
AciI	CCGC	6 cut(s)	890, 1264, 1606, 1613, 2256, 2788
AclWI	GGATC	7 cut(s)	162, 1125, 1138, 1565, 1578, 1868, 2485
AcoI	YGGCCR	3 cut(s)	372, 875, 2860
AcuI	CTGAAG	5 cut(s)	93, 783, 1101, 2990, 3282
AfaI	GTAC	8 cut(s)	176, 474, 864, 896, 1588, 1904, 3066, 3127
AfiI	CCNNNNNNNGG	7 cut(s)	171, 944, 1925, 2242, 2278, 2858, 3172
AflII	CTTAAG	1 cut(s)	2131
AflIII	ACRYGT	2 cut(s)	448, 951
AjiI	CACGTC	2 cut(s)	1418, 1762
AjnI	CCWGG	9 cut(s)	8, 958, 985, 1668, 2271, 2347, 2428, 3003, 3494
AjuI	GAANNNNNNNTTGG	2 cut(s)	2120, 2152
AloI	GAACNNNNNNTCC	4 cut(s)	769, 801, 2424, 2456
Alw21I	GWGCWC	1 cut(s)	1108
Alw26I	GTCTC	5 cut(s)	395, 1393, 2753, 3101, 3427
AlwI	GGATC	7 cut(s)	162, 1125, 1138, 1565, 1578, 1868, 2485
AlwNI	CAGNNNCTG	2 cut(s)	353, 806
AoxI	GGCC	5 cut(s)	372, 875, 1001, 2860, 2965
ArsI	GACNNNNNNTTYG	2 cut(s)	2532, 2564
Asp700I	GAANNNNTTC	1 cut(s)	126
AspLEI	GCGC	3 cut(s)	1606, 1817, 1892
AspS9I	GGNCC	3 cut(s)	914, 2124, 2269
AsuII	TTCGAA	1 cut(s)	1773
AvaII	GGWCC	3 cut(s)	914, 2124, 2269
AxyI	CCTNAGG	2 cut(s)	3057, 3273
BaeI	ACNNNNGTAYC	2 cut(s)	786, 819
BalI	TGGCCA	2 cut(s)	877, 2862
BamHI	GGATCC	2 cut(s)	1130, 1570
BanI	GGYRCC	2 cut(s)	206, 2281
BanII	GRGCYC	1 cut(s)	741
BarI	GAAGNNNNNNTAC	2 cut(s)	2509, 2541
BauI	CACGAG	2 cut(s)	504, 2646
BbsI	GAAGAC	3 cut(s)	434, 1023, 3303
Bbv12I	GWGCWC	1 cut(s)	1108
BceAI	ACGGC	2 cut(s)	387, 2980
BcgI	CGANNNNNNTGC	4 cut(s)	1202, 1236, 2297, 2331
BciT130I	CCWGG	9 cut(s)	10, 960, 987, 1670, 2273, 2349, 2430, 3005, 3496
BciVI	GTATCC	2 cut(s)	1331, 1729
BclI	TGATCA	5 cut(s)	22, 1036, 1174, 2098, 3241
BcoDI	GTCTC	5 cut(s)	395, 1393, 2753, 3101, 3427
BfaI	CTAG	4 cut(s)	791, 2057, 2214, 3528
BfmI	CTRYAG	2 cut(s)	2205, 2901
BfrI	CTTAAG	1 cut(s)	2131
BfuAI	ACCTGC	4 cut(s)	958, 1357, 3076, 3217
BfuI	GTATCC	2 cut(s)	1331, 1729
BmcAI	AGTACT	1 cut(s)	474
Bme1390I	CCNGG	9 cut(s)	10, 960, 987, 1670, 2273, 2349, 2430, 3005, 3496
Bme18I	GGWCC	3 cut(s)	914, 2124, 2269
BmgBI	CACGTC	2 cut(s)	1418, 1762
BmgT120I	GGNCC	3 cut(s)	914, 2124, 2269
BmiI	GGNNCC	7 cut(s)	123, 202, 208, 972, 1132, 1572, 2283
BmrFI	CCNGG	9 cut(s)	10, 960, 987, 1670, 2273, 2349, 2430, 3005, 3496
BmrI	ACTGGG	1 cut(s)	735
BmsI	GCATC	4 cut(s)	400, 826, 1228, 1486
BmuI	ACTGGG	1 cut(s)	735
BpiI	GAAGAC	3 cut(s)	434, 1023, 3303
BplI	GAGNNNNNCTC	4 cut(s)	1741, 1773, 2629, 2661
BpmI	CTGGAG	7 cut(s)	218, 744, 1555, 2175, 2451, 3267, 3478
Bpu14I	TTCGAA	1 cut(s)	1773
BpuEI	CTTGAG	3 cut(s)	293, 843, 1231
BsaBI	GATNNNNATC	1 cut(s)	1620
BsaI	GGTCTC	2 cut(s)	395, 2753
BsaJI	CCNNGG	5 cut(s)	342, 872, 958, 986, 2285
BsaWI	WCCGGW	1 cut(s)	203
BsaXI	ACNNNNNCTCC	4 cut(s)	2424, 2454, 3476, 3506
Bsc4I	CCNNNNNNNGG	7 cut(s)	171, 944, 1925, 2242, 2278, 2858, 3172
Bse21I	CCTNAGG	2 cut(s)	3057, 3273
Bse3DI	GCAATG	4 cut(s)	498, 669, 1978, 3202
Bse8I	GATNNNNATC	1 cut(s)	1620
BseBI	CCWGG	9 cut(s)	10, 960, 987, 1670, 2273, 2349, 2430, 3005, 3496
BseDI	CCNNGG	5 cut(s)	342, 872, 958, 986, 2285
BseGI	GGATG	8 cut(s)	651, 841, 1339, 1621, 2068, 2281, 2578, 2987
BseJI	GATNNNNATC	1 cut(s)	1620
BseLI	CCNNNNNNNGG	7 cut(s)	171, 944, 1925, 2242, 2278, 2858, 3172
BseMI	GCAATG	4 cut(s)	498, 669, 1978, 3202
BseRI	GAGGAG	1 cut(s)	2650
BseYI	CCCAGC	1 cut(s)	2680
BsgI	GTGCAG	1 cut(s)	3195
Bsh1236I	CGCG	3 cut(s)	580, 1606, 2256
BshFI	GGCC	5 cut(s)	374, 877, 1003, 2862, 2967
BshNI	GGYRCC	2 cut(s)	206, 2281
BsiHKAI	GWGCWC	1 cut(s)	1108
BsiSI	CCGG	2 cut(s)	198, 204
BslFI	GGGAC	5 cut(s)	1307, 1577, 1748, 2126, 2731
BslI	CCNNNNNNNGG	7 cut(s)	171, 944, 1925, 2242, 2278, 2858, 3172
BsmAI	GTCTC	5 cut(s)	395, 1393, 2753, 3101, 3427
BsmFI	GGGAC	5 cut(s)	1307, 1577, 1748, 2126, 2731
BsmI	GAATGC	2 cut(s)	2413, 3202
BsnI	GGCC	5 cut(s)	374, 877, 1003, 2862, 2967
Bso31I	GGTCTC	2 cut(s)	395, 2753
Bsp119I	TTCGAA	1 cut(s)	1773
Bsp1286I	GDGCHC	2 cut(s)	741, 1108
Bsp1407I	TGTACA	1 cut(s)	1902
Bsp19I	CCATGG	2 cut(s)	872, 2285
Bsp68I	TCGCGA	1 cut(s)	580
BspACI	CCGC	6 cut(s)	890, 1264, 1606, 1613, 2256, 2788
BspANI	GGCC	5 cut(s)	374, 877, 1003, 2862, 2967
BspFNI	CGCG	3 cut(s)	580, 1606, 2256
BspHI	TCATGA	2 cut(s)	1096, 1557
BspLI	GGNNCC	7 cut(s)	123, 202, 208, 972, 1132, 1572, 2283
BspMAI	CTGCAG	2 cut(s)	2209, 2905
BspMI	ACCTGC	4 cut(s)	958, 1357, 3076, 3217
BspPI	GGATC	7 cut(s)	162, 1125, 1138, 1565, 1578, 1868, 2485
BspQI	GCTCTTC	1 cut(s)	2483
BspT104I	TTCGAA	1 cut(s)	1773
BspT107I	GGYRCC	2 cut(s)	206, 2281
BspTI	CTTAAG	1 cut(s)	2131
BspTNI	GGTCTC	2 cut(s)	395, 2753
BsrDI	GCAATG	4 cut(s)	498, 669, 1978, 3202
BsrGI	TGTACA	1 cut(s)	1902
BssECI	CCNNGG	5 cut(s)	342, 872, 958, 986, 2285
BssSI	CACGAG	2 cut(s)	504, 2646
BssT1I	CCWWGG	2 cut(s)	872, 2285
Bst2BI	CACGAG	2 cut(s)	504, 2646
Bst2UI	CCWGG	9 cut(s)	10, 960, 987, 1670, 2273, 2349, 2430, 3005, 3496
Bst4CI	ACNGT	7 cut(s)	389, 1055, 2027, 2095, 2396, 2420, 2548
BstAFI	CTTAAG	1 cut(s)	2131
BstAPI	GCANNNNNTGC	2 cut(s)	898, 2909
BstAUI	TGTACA	1 cut(s)	1902
BstBI	TTCGAA	1 cut(s)	1773
BstC8I	GCNNGC	7 cut(s)	489, 595, 669, 1969, 2180, 2205, 2219
BstDSI	CCRYGG	2 cut(s)	872, 2285
BstF5I	GGATG	8 cut(s)	651, 841, 1339, 1621, 2068, 2281, 2578, 2987
BstFNI	CGCG	3 cut(s)	580, 1606, 2256
BstHHI	GCGC	3 cut(s)	1606, 1817, 1892
BstMAI	GTCTC	5 cut(s)	395, 1393, 2753, 3101, 3427
BstNI	CCWGG	9 cut(s)	10, 960, 987, 1670, 2273, 2349, 2430, 3005, 3496
BstNSI	RCATGY	4 cut(s)	597, 901, 955, 2221
BstSCI	CCNGG	9 cut(s)	8, 958, 985, 1668, 2271, 2347, 2428, 3003, 3494
BstSFI	CTRYAG	2 cut(s)	2205, 2901
BstUI	CGCG	3 cut(s)	580, 1606, 2256
BstV2I	GAAGAC	3 cut(s)	434, 1023, 3303
BstX2I	RGATCY	3 cut(s)	1130, 1570, 2477
BstXI	CCANNNNNNTGG	1 cut(s)	873
BstYI	RGATCY	3 cut(s)	1130, 1570, 2477
Bsu36I	CCTNAGG	2 cut(s)	3057, 3273
BsuI	GTATCC	2 cut(s)	1331, 1729
BsuRI	GGCC	5 cut(s)	374, 877, 1003, 2862, 2967
BtgI	CCRYGG	2 cut(s)	872, 2285
BtgZI	GCGATG	1 cut(s)	1797
BtrI	CACGTC	2 cut(s)	1418, 1762
BtsCI	GGATG	8 cut(s)	651, 841, 1339, 1621, 2068, 2281, 2578, 2987
BtsI	GCAGTG	2 cut(s)	1462, 3035
BtuMI	TCGCGA	1 cut(s)	580
BveI	ACCTGC	4 cut(s)	958, 1357, 3076, 3217
Cac8I	GCNNGC	7 cut(s)	489, 595, 669, 1969, 2180, 2205, 2219
CaiI	CAGNNNCTG	2 cut(s)	353, 806
CciI	TCATGA	2 cut(s)	1096, 1557
CfoI	GCGC	3 cut(s)	1606, 1817, 1892
Cfr13I	GGNCC	3 cut(s)	914, 2124, 2269
Csp6I	GTAC	8 cut(s)	175, 473, 863, 895, 1587, 1903, 3065, 3126
CviQI	GTAC	8 cut(s)	175, 473, 863, 895, 1587, 1903, 3065, 3126
DraI	TTTAAA	1 cut(s)	2193
EaeI	YGGCCR	3 cut(s)	372, 875, 2860
Eco130I	CCWWGG	2 cut(s)	872, 2285
Eco24I	GRGCYC	1 cut(s)	741
Eco31I	GGTCTC	2 cut(s)	395, 2753
Eco32I	GATATC	1 cut(s)	2503
Eco47I	GGWCC	3 cut(s)	914, 2124, 2269
Eco57I	CTGAAG	5 cut(s)	93, 783, 1101, 2990, 3282
Eco81I	CCTNAGG	2 cut(s)	3057, 3273
EcoO109I	RGGNCCY	1 cut(s)	914
EcoRI	GAATTC	3 cut(s)	316, 427, 3226
EcoRII	CCWGG	9 cut(s)	8, 958, 985, 1668, 2271, 2347, 2428, 3003, 3494
EcoRV	GATATC	1 cut(s)	2503
EcoT14I	CCWWGG	2 cut(s)	872, 2285
EcoT22I	ATGCAT	2 cut(s)	599, 2223
EcoT38I	GRGCYC	1 cut(s)	741
ErhI	CCWWGG	2 cut(s)	872, 2285
FaqI	GGGAC	5 cut(s)	1307, 1577, 1748, 2126, 2731
FbaI	TGATCA	5 cut(s)	22, 1036, 1174, 2098, 3241
FokI	GGATG	8 cut(s)	658, 848, 1346, 1628, 2075, 2288, 2585, 2974
FriOI	GRGCYC	1 cut(s)	741
FspBI	CTAG	4 cut(s)	791, 2057, 2214, 3528
FspI	TGCGCA	1 cut(s)	1891
GlaI	GCGC	3 cut(s)	1605, 1816, 1891
GsaI	CCCAGC	1 cut(s)	2684
GsuI	CTGGAG	7 cut(s)	218, 744, 1555, 2175, 2451, 3267, 3478
HaeIII	GGCC	5 cut(s)	374, 877, 1003, 2862, 2967
HapII	CCGG	2 cut(s)	198, 204
HhaI	GCGC	3 cut(s)	1606, 1817, 1892
Hin6I	GCGC	3 cut(s)	1604, 1815, 1890
HinP1I	GCGC	3 cut(s)	1604, 1815, 1890
HincII	GTYRAC	1 cut(s)	3249
HindII	GTYRAC	1 cut(s)	3249
HindIII	AAGCTT	2 cut(s)	2134, 2732
HpaI	GTTAAC	1 cut(s)	3249
HpaII	CCGG	2 cut(s)	198, 204
Hpy166II	GTNNAC	9 cut(s)	65, 219, 335, 788, 2269, 2551, 3128, 3249, 3382
Hpy8I	GTNNAC	9 cut(s)	65, 219, 335, 788, 2269, 2551, 3128, 3249, 3382
Hpy99I	CGWCG	1 cut(s)	1422
HpyAV	CCTTC	8 cut(s)	204, 460, 1769, 1919, 2397, 2535, 3141, 3372
HpyCH4III	ACNGT	7 cut(s)	389, 1055, 2027, 2095, 2396, 2420, 2548
HpyCH4IV	ACGT	3 cut(s)	448, 1417, 1761
HpySE526I	ACGT	3 cut(s)	448, 1417, 1761
HspAI	GCGC	3 cut(s)	1604, 1815, 1890
Ksp22I	TGATCA	5 cut(s)	22, 1036, 1174, 2098, 3241
KspAI	GTTAAC	1 cut(s)	3249
LguI	GCTCTTC	1 cut(s)	2483
LmnI	GCTCC	3 cut(s)	206, 572, 2156
LweI	GCATC	4 cut(s)	400, 826, 1228, 1486
MaeI	CTAG	4 cut(s)	791, 2057, 2214, 3528
MaeII	ACGT	3 cut(s)	448, 1417, 1761
MaeIII	GTNAC	6 cut(s)	283, 947, 1421, 1684, 1723, 2824
MfeI	CAATTG	1 cut(s)	3592
MflI	RGATCY	3 cut(s)	1130, 1570, 2477
MhlI	GDGCHC	2 cut(s)	741, 1108
MlsI	TGGCCA	2 cut(s)	877, 2862
MluNI	TGGCCA	2 cut(s)	877, 2862
MlyI	GAGTC	3 cut(s)	7, 1013, 1862
MmeI	TCCRAC	7 cut(s)	61, 71, 1037, 1158, 2468, 3015, 3081
Mox20I	TGGCCA	2 cut(s)	877, 2862
Mph1103I	ATGCAT	2 cut(s)	599, 2223
MroXI	GAANNNNTTC	1 cut(s)	126
MscI	TGGCCA	2 cut(s)	877, 2862
MslI	CAYNNNNRTG	2 cut(s)	1095, 1455
Msp20I	TGGCCA	2 cut(s)	877, 2862
MspA1I	CMGCKG	4 cut(s)	2264, 2816, 2906, 3377
MspCI	CTTAAG	1 cut(s)	2131
MspI	CCGG	2 cut(s)	198, 204
MspR9I	CCNGG	9 cut(s)	10, 960, 987, 1670, 2273, 2349, 2430, 3005, 3496
MunI	CAATTG	1 cut(s)	3592
Mva1269I	GAATGC	2 cut(s)	2413, 3202
MvaI	CCWGG	9 cut(s)	10, 960, 987, 1670, 2273, 2349, 2430, 3005, 3496
MvnI	CGCG	3 cut(s)	580, 1606, 2256
NcoI	CCATGG	2 cut(s)	872, 2285
NlaIV	GGNNCC	7 cut(s)	123, 202, 208, 972, 1132, 1572, 2283
NmeAIII	GCCGAG	1 cut(s)	2877
NmuCI	GTSAC	3 cut(s)	283, 1421, 1723
NruI	TCGCGA	1 cut(s)	580
NsbI	TGCGCA	1 cut(s)	1891
NsiI	ATGCAT	2 cut(s)	599, 2223
NspI	RCATGY	4 cut(s)	597, 901, 955, 2221
NspV	TTCGAA	1 cut(s)	1773
PaeI	GCATGC	2 cut(s)	597, 2221
PagI	TCATGA	2 cut(s)	1096, 1557
PaqCI	CACCTGC	1 cut(s)	3217
PciI	ACATGT	1 cut(s)	951
PciSI	GCTCTTC	1 cut(s)	2483
PcsI	WCGNNNNNNNCGW	2 cut(s)	445, 1779
PctI	GAATGC	2 cut(s)	2413, 3202
PdmI	GAANNNNTTC	1 cut(s)	126
PflMI	CCANNNNNTGG	1 cut(s)	2278
PfoI	TCCNGGA	4 cut(s)	8, 2428, 3003, 3494
PleI	GAGTC	3 cut(s)	7, 1013, 1861
PpsI	GAGTC	3 cut(s)	7, 1013, 1861
PpuMI	RGGWCCY	1 cut(s)	914
PscI	ACATGT	1 cut(s)	951
Psp5II	RGGWCCY	1 cut(s)	914
Psp6I	CCWGG	9 cut(s)	8, 958, 985, 1668, 2271, 2347, 2428, 3003, 3494
PspFI	CCCAGC	1 cut(s)	2680
PspGI	CCWGG	9 cut(s)	8, 958, 985, 1668, 2271, 2347, 2428, 3003, 3494
PspN4I	GGNNCC	7 cut(s)	123, 202, 208, 972, 1132, 1572, 2283
PspPI	GGNCC	3 cut(s)	914, 2124, 2269
PspPPI	RGGWCCY	1 cut(s)	914
PstI	CTGCAG	2 cut(s)	2209, 2905
PstNI	CAGNNNCTG	2 cut(s)	353, 806
PsuI	RGATCY	3 cut(s)	1130, 1570, 2477
PvuII	CAGCTG	4 cut(s)	2264, 2816, 2906, 3377
RruI	TCGCGA	1 cut(s)	580
RsaI	GTAC	8 cut(s)	176, 474, 864, 896, 1588, 1904, 3066, 3127
RsaNI	GTAC	8 cut(s)	175, 473, 863, 895, 1587, 1903, 3065, 3126
RseI	CAYNNNNRTG	2 cut(s)	1095, 1455
SapI	GCTCTTC	1 cut(s)	2483
Sau96I	GGNCC	3 cut(s)	914, 2124, 2269
ScaI	AGTACT	1 cut(s)	474
SchI	GAGTC	3 cut(s)	7, 1013, 1862
ScrFI	CCNGG	9 cut(s)	10, 960, 987, 1670, 2273, 2349, 2430, 3005, 3496
SduI	GDGCHC	2 cut(s)	741, 1108
SfaNI	GCATC	4 cut(s)	400, 826, 1228, 1486
SfcI	CTRYAG	2 cut(s)	2205, 2901
SfuI	TTCGAA	1 cut(s)	1773
SinI	GGWCC	3 cut(s)	914, 2124, 2269
SmiMI	CAYNNNNRTG	2 cut(s)	1095, 1455
SmlI	CTYRAG	4 cut(s)	272, 858, 1246, 2131
SmoI	CTYRAG	4 cut(s)	272, 858, 1246, 2131
SphI	GCATGC	2 cut(s)	597, 2221
SsiI	CCGC	6 cut(s)	890, 1264, 1606, 1613, 2256, 2788
SspMI	CTAG	4 cut(s)	791, 2057, 2214, 3528
StyD4I	CCNGG	9 cut(s)	8, 958, 985, 1668, 2271, 2347, 2428, 3003, 3494
StyI	CCWWGG	2 cut(s)	872, 2285
TaaI	ACNGT	7 cut(s)	389, 1055, 2027, 2095, 2396, 2420, 2548
TaiI	ACGT	3 cut(s)	451, 1420, 1764
TaqI	TCGA	2 cut(s)	1773, 3365
TaqII	GACCGA	1 cut(s)	2100
TatI	WGTACW	5 cut(s)	472, 894, 1586, 1902, 3125
TseFI	GTSAC	3 cut(s)	283, 1421, 1723
Tsp45I	GTSAC	3 cut(s)	283, 1421, 1723
TspGWI	ACGGA	2 cut(s)	179, 1311
Van91I	CCANNNNNTGG	1 cut(s)	2278
Vha464I	CTTAAG	1 cut(s)	2131
VpaK11BI	GGWCC	3 cut(s)	914, 2124, 2269
XceI	RCATGY	4 cut(s)	597, 901, 955, 2221
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1433, 3097
XmnI	GAANNNNTTC	1 cut(s)	126
XspI	CTAG	4 cut(s)	791, 2057, 2214, 3528
ZrmI	AGTACT	1 cut(s)	474
Zsp2I	ATGCAT	2 cut(s)	599, 2223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.