Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007931

Physical Location & Seq

Genomic Coordinates Reverse (-)

29123914 .. 29129280

Gene Structure 5367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG270700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3465 bp

ATGGACTCCAGGACTCGCCTTGATCATGTTCTCTTCCAACTCACTCCAACCAGAACAAGATGTGAACTTGTAATGTTTGCTGCTGGTGGTGGAAATGAGAAATTGGCTTCAGGGTTTTTGGAACCATTTCTTACACATTTGAAATGTGCAAAGGATCAGATTTCCAAAGGAGGGTACTCCATTACTCTCCGTCCTTCCGGCTCCGGTGCCTCTTGGTTCACCAAAGCCACTCTCCAGAGGTTTGTGAGATTTGTTAGCACACCAGAAGTTCTTGAGAGATTTGTGACTATTGAGAAAGAGATTTTGCAGATTGAGAATTCGCTTCAATCAAGTGAACTAACCGAGGCAGAAGCTGATGGGAGTAAATCAACAGCCATTAAGCCAAACAGTGAATCCAATGAGACCATTGATGCTGTGCCAGAAGAGAATTCCAAGGAAGCATGCATAAATTTCATAAATCTATACAAGCAAAAGAACGAAGATAGGTTTTGGATGGAAGAAATAGCAGCAATGCAGGCACTCTCTCAGCCGCAACTGCCATACTTGGCAACATCAGGAATCATTCTTGCTGGAGAAGATAATGAGCCCAGTCAGAATCTTAACCAAAGTATTCTCTCCATTGGGAAGAATGGTTCACTAGATACTTCAGTGTCTGATTCAACTGCAAGTCATGGAAGTCTGGATGCGAACCAAGATGGGAAGGCTCAAGTACCAAACCCATGGCCAAACCATCTTCCGCAGTACATGCAAACTTTTCAAGGTCCTGCATTTCAACAAATGCACCCCTATCAAGGTTACATGTTCCCTGGTATGCAGGTTCCACCATACTATCCAGGGAATATGAAATGGCCTCCAAATGTGGAAGACTCTGGCTTTATGTTTGATCAGGAATCTGATGGCCGTTGGAAGCATAGATCTCATAGAACTAAAAAGAAACATTCTCATGAAAGAGCACTAGAAACTTCAGAACAAGATGGATCCAACGAAAACACTGGTTCAAGTTATGAAAGTGAATCTGATGATCATTTCCAGAATGGTAAAAGGCACTCTGGAACAGAGCAGCAGCATCGGAAAAAGCATGGGCAGAAGTCCTCAAGAAAGGTTGTTATCCGCAATATCAATTACATAAGCTCTAAGAGGGATGGAGAAAGTGGGTCTGAGGGAAATTCATCTGATGAGGATGGATACATTGATGGGAAATCCATTAAACAGCACGTAGAGGAAGCTGTTGGTTCATTGGAGAAGAGACATAAATCAAGCTCACGTCGTCACCAAAAACAAGGTGGAAGCAAGTTGCATGGCAGTGTAGATGATTCAAATGGAGAGGAACTTAAAAATGCAGATGCAAATAAACATGAGGGAGAAAAGCAAAATGACAACTGGAGTGCTTTCCAGAATCTTCTCATGAGGGACGAGGATCCAAGTTCTTTCAGTACAGAATCACATAATGTGCGGATTGAGGATGAATATCTTTCAAGTAATAACACTGGTCAAGGACGATCATTTGAATTTAACCAGGAACATGAGAAAGTAACGAAGCAAAGAGCAGTTTCAAGTGAGTATTTGATGGTGTCAGAGAGGGATACAGGAAATGAGAGTAAAACTCATGTCCCATACTTCGAAGGTGGCGATGATGTTGGTCGCACTACCAAAAAAAATGGCGCATACGAGGATTTATTATTTTCACAGAGAAATGAAGAGTCAAGGATCAATTCCCATGATACTCTATCTGATTGCGCAAATGAATTGTACAAAACCAAATGTCCAAAAGAAGGGGATTGGTTTATCAGCAACCAACCAGATAATCAGGTTGCCAGCAATGATCTGAAATTGCTTGATGGGGTTTATGCTTCATCAGCGTTGGCTATGGATAGTGTTCATGCTGAGAAAAAGAGAGAAGTTCTAGTGGATGATTCTTTCATGGTTCAAGACCGATCAACAGTTAATCATCAATCTGATTCTCAGTTCAGGACCAACTTAAGCTTCGTCCCAGAATACACTGGAGCTACTCAAAATGAATATGGCAAGCCAGAGATTTTAAATGATAAGCCTGCAGCCTCTAGCATGCATGAACCAGATGACCTATTCATGCTGCTTGATCGCGGTTCAGCTGTGGACCAGGATGTGGCACCATGGAATCCAGAGATGGACTACGAACTTAATGCTTCATCACTTGAAGCCAGTGAAAAGAATCCTGGCATTGAAACAACTGATTCTATTGGTGATGAGCAGCCTTCTAATAGTAAGGGCAAGAATGCTAAAAACAGTGGAACTCCTGGAGGAAAAGTTCCAACCAAAGAAGCAAGGTCTAAAGTTGCAAATGGATCTTTGGGGAAGAGCAGATATGATATCTTATCCAGAAGTAAGAAACCTTCTTCTGTAAGCAAAAGCACAGTCCACAGAAGCAAATTTGAAAAGGATGAAGAACAAAGAAAGAGAATGGAAGAGTTAGTAATTGAACGCCAGAAGAGAATTGCTGAGAGGAGTGCTGCTCGTGGTTCTAATACTGCAACATCTAAGAAGGCCCCAGCAGAAATTAAAAATGCCAAAACCACCATGACTAAGACAAAGAATGATAAGCTTAAAGTTCAGTCCCCAACCGAAGAGACCAAGAAAGCAGAGAAGCCTATCATGCGGAGTTCCACCATTGAACGCCTTGCAACTGCAAGGGTAACTGAGAAGTTGCCAACAACTCTGCCGAGTTCTGGCCAACCCAAAAAGCAAACAATCAAGGCAAATGGGGTAGCTGCAGCTGCCTCATCACAGAAGGCAGCTGGTGCTGAGAACAAGAAAGCAAGTCCAAACAAAACCAAACCATCAATAGCGAAAGATGGCCTGAAGAATTCAAGTAAGTCATCCAACTCTGATGTCCAGGAAAAAGTGTGCATTGAAGCCACAGAAGCACTGCCAGTTGAGCCGACACCTAAGGCTGTACCTGCAACTCAACCTACTAATGCCATCATTGAGTTGGAAGAGACTAAGCAACTCCATAGTACATCTTCCATTGAAAAGAATGAGGGAAACTTGGTGATGCAAAGAGAGGCATTAGATAAAGGAAGCTGCAATGAGCATTCACCTGCACCTATTGAAGAGAATTCTGCACAGCCTGATCAGTTAACAGCTGATGCTGAAGAATTACTTCAGGAATCTCCAGTTCTTAGTGAAGACAAAAGAAACTTCATTATTGAAGAGAGTGTAGAACCTCATATTCTGGAATCACCTACCAAACCTTCGATTGTTTCAGCTGTGAACATTGATGAAAATGGTGATATAACCAAAGGTTTTCCAGTCTCTACTGAAATTTCTGAGATAGAAATTTCTACTCCACCATATAACGAAACAGCCTCAGAACAACTCCACTCCAGGAAGAAATGGAATGGTGATGAAAACTCTCCTAAAGCTGCCAAAGGGTTTAGGAAACTTCTGTTGTTTGGACGAAAGAGCAAGAACACTCCTGTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009718 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015994 GO:0015995 GO:0016020 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0046283 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051186 GO:0051188 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0071944 GO:0080090 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1154

Amino Acids

127.81

Weight (kDa)

5.76

Isoelectric Point (pI)

53.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27430 AT4G27430
fragaria_vesca	FvH4_3g20630 FvH4_3g20630 FvH4_3g20630 FvH4_3g20630 FvH4_3g20630
malus_domestica	MD03G1223400.v1.1 MD11G1241400.v1.1
prunus_persica	Prupe.4G186100_v2.0.a1 Prupe.4G186100_v2.0.a1
pyrus_communis	pycom03g17170 pycom11g21290 pycom11g21300
rosa_chinensis	RchiOBHm_Chr5g0034651
rosa_laevigata	RLG00000033565
rosa_multiflora	Rmu_sc0002460.1_g000082
rosa_roxburghii	Rroxscaffold_1G00045660
rosa_rugosa	Rorug05G0147400
rosa_samantha	Rh5AG239600 Rh5BG240300 Rh5CG270700 Rh5DG248500
rosa_wichuraiana	Rw5G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	3085
Acc16I	TGCGCA	1 cut(s)	1738
Acc36I	ACCTGC	3 cut(s)	805, 2944, 3085
AccB1I	GGYRCC	2 cut(s)	206, 2128
AccB7I	CCANNNNNTGG	1 cut(s)	2125
AccII	CGCG	1 cut(s)	2103
AciI	CCGC	6 cut(s)	530, 737, 1111, 1453, 2103, 2635
AclWI	GGATC	7 cut(s)	162, 972, 985, 1412, 1425, 1715, 2332
AcoI	YGGCCR	3 cut(s)	722, 898, 2707
AcuI	CTGAAG	6 cut(s)	93, 630, 948, 2858, 3125, 3150
AfaI	GTAC	7 cut(s)	176, 711, 743, 1435, 1751, 2934, 2995
AfiI	CCNNNNNNNGG	5 cut(s)	171, 791, 1772, 2125, 2705
AflII	CTTAAG	1 cut(s)	1978
AflIII	ACRYGT	1 cut(s)	798
AjiI	CACGTC	1 cut(s)	1265
AjnI	CCWGG	9 cut(s)	8, 805, 832, 1515, 2118, 2194, 2275, 2871, 3362
AjuI	GAANNNNNNNTTGG	2 cut(s)	1967, 1999
AloI	GAACNNNNNNTCC	4 cut(s)	616, 648, 2271, 2303
Alw21I	GWGCWC	1 cut(s)	955
Alw26I	GTCTC	5 cut(s)	395, 1240, 2600, 2969, 3295
AlwI	GGATC	7 cut(s)	162, 972, 985, 1412, 1425, 1715, 2332
AlwNI	CAGNNNCTG	2 cut(s)	353, 653
AoxI	GGCC	6 cut(s)	722, 848, 898, 2523, 2707, 2833
ArsI	GACNNNNNNTTYG	2 cut(s)	2379, 2411
Asp700I	GAANNNNTTC	2 cut(s)	126, 3138
AspLEI	GCGC	2 cut(s)	1664, 1739
AspS9I	GGNCC	4 cut(s)	761, 1971, 2116, 2524
AsuHPI	GGTGA	8 cut(s)	211, 1262, 2234, 3040, 3066, 3210, 3278, 3392
AsuII	TTCGAA	1 cut(s)	1620
AvaII	GGWCC	3 cut(s)	761, 1971, 2116
AxyI	CCTNAGG	1 cut(s)	2925
BaeI	ACNNNNGTAYC	2 cut(s)	633, 666
BalI	TGGCCA	2 cut(s)	724, 2709
BamHI	GGATCC	2 cut(s)	977, 1417
BanI	GGYRCC	2 cut(s)	206, 2128
BanII	GRGCYC	1 cut(s)	588
BarI	GAAGNNNNNNTAC	2 cut(s)	2356, 2388
BauI	CACGAG	1 cut(s)	2493
BbsI	GAAGAC	2 cut(s)	870, 3171
Bbv12I	GWGCWC	1 cut(s)	955
BceAI	ACGGC	1 cut(s)	885
BcgI	CGANNNNNNTGC	4 cut(s)	1049, 1083, 2144, 2178
BciT130I	CCWGG	9 cut(s)	10, 807, 834, 1517, 2120, 2196, 2277, 2873, 3364
BciVI	GTATCC	2 cut(s)	1178, 1576
BclI	TGATCA	4 cut(s)	22, 883, 1021, 3109
BcoDI	GTCTC	5 cut(s)	395, 1240, 2600, 2969, 3295
BfaI	CTAG	4 cut(s)	638, 956, 1904, 2061
BfmI	CTRYAG	2 cut(s)	2052, 2748
BfrI	CTTAAG	1 cut(s)	1978
BfuAI	ACCTGC	3 cut(s)	805, 2944, 3085
BfuI	GTATCC	2 cut(s)	1178, 1576
BglII	AGATCT	1 cut(s)	914
Bme1390I	CCNGG	9 cut(s)	10, 807, 834, 1517, 2120, 2196, 2277, 2873, 3364
Bme18I	GGWCC	3 cut(s)	761, 1971, 2116
BmgBI	CACGTC	1 cut(s)	1265
BmgT120I	GGNCC	4 cut(s)	761, 1971, 2116, 2524
BmiI	GGNNCC	8 cut(s)	123, 202, 208, 819, 979, 1419, 2130, 2526
BmrFI	CCNGG	9 cut(s)	10, 807, 834, 1517, 2120, 2196, 2277, 2873, 3364
BmrI	ACTGGG	1 cut(s)	582
BmsI	GCATC	6 cut(s)	400, 673, 1075, 1333, 3021, 3115
BmuI	ACTGGG	1 cut(s)	582
BpiI	GAAGAC	2 cut(s)	870, 3171
BplI	GAGNNNNNCTC	4 cut(s)	1588, 1620, 2476, 2508
BpmI	CTGGAG	7 cut(s)	218, 591, 1402, 2022, 2298, 3135, 3346
Bpu14I	TTCGAA	1 cut(s)	1620
BpuEI	CTTGAG	3 cut(s)	293, 690, 1078
BsaAI	YACGTR	1 cut(s)	1216
BsaBI	GATNNNNATC	1 cut(s)	1467
BsaI	GGTCTC	2 cut(s)	395, 2600
BsaJI	CCNNGG	6 cut(s)	342, 432, 719, 805, 833, 2132
BsaWI	WCCGGW	1 cut(s)	203
BsaXI	ACNNNNNCTCC	2 cut(s)	2271, 2301
Bsc4I	CCNNNNNNNGG	5 cut(s)	171, 791, 1772, 2125, 2705
Bse1I	ACTGG	9 cut(s)	588, 997, 1385, 1492, 2005, 2181, 2909, 3152, 3287
Bse21I	CCTNAGG	1 cut(s)	2925
Bse3DI	GCAATG	3 cut(s)	516, 1825, 3070
Bse8I	GATNNNNATC	1 cut(s)	1467
BseBI	CCWGG	9 cut(s)	10, 807, 834, 1517, 2120, 2196, 2277, 2873, 3364
BseDI	CCNNGG	6 cut(s)	342, 432, 719, 805, 833, 2132
BseGI	GGATG	9 cut(s)	498, 688, 1147, 1186, 1468, 1915, 2128, 2425, 2855
BseJI	GATNNNNATC	1 cut(s)	1467
BseLI	CCNNNNNNNGG	5 cut(s)	171, 791, 1772, 2125, 2705
BseMI	GCAATG	3 cut(s)	516, 1825, 3070
BseMII	CTCAG	9 cut(s)	539, 1149, 1875, 1976, 2469, 2667, 2772, 3297, 3360
BseNI	ACTGG	9 cut(s)	588, 997, 1385, 1492, 2005, 2181, 2909, 3152, 3287
BseRI	GAGGAG	1 cut(s)	2497
BseYI	CCCAGC	1 cut(s)	2527
BsgI	GTGCAG	2 cut(s)	3063, 3084
Bsh1236I	CGCG	1 cut(s)	2103
BshFI	GGCC	6 cut(s)	724, 850, 900, 2525, 2709, 2835
BshNI	GGYRCC	2 cut(s)	206, 2128
BsiHKAI	GWGCWC	1 cut(s)	955
BsiSI	CCGG	2 cut(s)	198, 204
BslFI	GGGAC	4 cut(s)	1424, 1595, 1973, 2578
BslI	CCNNNNNNNGG	5 cut(s)	171, 791, 1772, 2125, 2705
BsmAI	GTCTC	5 cut(s)	395, 1240, 2600, 2969, 3295
BsmFI	GGGAC	4 cut(s)	1424, 1595, 1973, 2578
BsmI	GAATGC	2 cut(s)	2260, 3070
BsnI	GGCC	6 cut(s)	724, 850, 900, 2525, 2709, 2835
Bso31I	GGTCTC	2 cut(s)	395, 2600
Bsp119I	TTCGAA	1 cut(s)	1620
Bsp1286I	GDGCHC	2 cut(s)	588, 955
Bsp1407I	TGTACA	1 cut(s)	1749
Bsp19I	CCATGG	2 cut(s)	719, 2132
BspACI	CCGC	6 cut(s)	530, 737, 1111, 1453, 2103, 2635
BspANI	GGCC	6 cut(s)	724, 850, 900, 2525, 2709, 2835
BspCNI	CTCAG	9 cut(s)	538, 1150, 1876, 1975, 2470, 2668, 2773, 3298, 3359
BspFNI	CGCG	1 cut(s)	2103
BspHI	TCATGA	2 cut(s)	943, 1404
BspLI	GGNNCC	8 cut(s)	123, 202, 208, 819, 979, 1419, 2130, 2526
BspMAI	CTGCAG	2 cut(s)	2056, 2752
BspMI	ACCTGC	3 cut(s)	805, 2944, 3085
BspPI	GGATC	7 cut(s)	162, 972, 985, 1412, 1425, 1715, 2332
BspQI	GCTCTTC	1 cut(s)	2330
BspT104I	TTCGAA	1 cut(s)	1620
BspT107I	GGYRCC	2 cut(s)	206, 2128
BspTI	CTTAAG	1 cut(s)	1978
BspTNI	GGTCTC	2 cut(s)	395, 2600
BsrDI	GCAATG	3 cut(s)	516, 1825, 3070
BsrGI	TGTACA	1 cut(s)	1749
BsrI	ACTGG	9 cut(s)	588, 997, 1385, 1492, 2005, 2181, 2909, 3152, 3287
BssECI	CCNNGG	6 cut(s)	342, 432, 719, 805, 833, 2132
BssSI	CACGAG	1 cut(s)	2493
BssT1I	CCWWGG	3 cut(s)	432, 719, 2132
Bst2BI	CACGAG	1 cut(s)	2493
Bst2UI	CCWGG	9 cut(s)	10, 807, 834, 1517, 2120, 2196, 2277, 2873, 3364
Bst4CI	ACNGT	4 cut(s)	389, 1942, 2267, 2395
BstAFI	CTTAAG	1 cut(s)	1978
BstAPI	GCANNNNNTGC	2 cut(s)	745, 2777
BstAUI	TGTACA	1 cut(s)	1749
BstBAI	YACGTR	1 cut(s)	1216
BstBI	TTCGAA	1 cut(s)	1620
BstC8I	GCNNGC	6 cut(s)	442, 516, 1816, 2027, 2052, 2066
BstDSI	CCRYGG	2 cut(s)	719, 2132
BstF5I	GGATG	9 cut(s)	498, 688, 1147, 1186, 1468, 1915, 2128, 2425, 2855
BstFNI	CGCG	1 cut(s)	2103
BstHHI	GCGC	2 cut(s)	1664, 1739
BstMAI	GTCTC	5 cut(s)	395, 1240, 2600, 2969, 3295
BstNI	CCWGG	9 cut(s)	10, 807, 834, 1517, 2120, 2196, 2277, 2873, 3364
BstNSI	RCATGY	4 cut(s)	444, 748, 802, 2068
BstSCI	CCNGG	9 cut(s)	8, 805, 832, 1515, 2118, 2194, 2275, 2871, 3362
BstSFI	CTRYAG	2 cut(s)	2052, 2748
BstUI	CGCG	1 cut(s)	2103
BstV2I	GAAGAC	2 cut(s)	870, 3171
BstX2I	RGATCY	4 cut(s)	914, 977, 1417, 2324
BstXI	CCANNNNNNTGG	1 cut(s)	720
BstYI	RGATCY	4 cut(s)	914, 977, 1417, 2324
Bsu36I	CCTNAGG	1 cut(s)	2925
BsuI	GTATCC	2 cut(s)	1178, 1576
BsuRI	GGCC	6 cut(s)	724, 850, 900, 2525, 2709, 2835
BtgI	CCRYGG	2 cut(s)	719, 2132
BtgZI	GCGATG	1 cut(s)	1644
BtrI	CACGTC	1 cut(s)	1265
BtsCI	GGATG	9 cut(s)	498, 688, 1147, 1186, 1468, 1915, 2128, 2425, 2855
BtsI	GCAGTG	2 cut(s)	1309, 2903
BtsIMutI	CAGTG	9 cut(s)	394, 654, 990, 1309, 1485, 1998, 2188, 2272, 2903
BveI	ACCTGC	3 cut(s)	805, 2944, 3085
Cac8I	GCNNGC	6 cut(s)	442, 516, 1816, 2027, 2052, 2066
CaiI	CAGNNNCTG	2 cut(s)	353, 653
CciI	TCATGA	2 cut(s)	943, 1404
CfoI	GCGC	2 cut(s)	1664, 1739
Cfr13I	GGNCC	4 cut(s)	761, 1971, 2116, 2524
Csp6I	GTAC	7 cut(s)	175, 710, 742, 1434, 1750, 2933, 2994
CviQI	GTAC	7 cut(s)	175, 710, 742, 1434, 1750, 2933, 2994
DraI	TTTAAA	1 cut(s)	2040
EaeI	YGGCCR	3 cut(s)	722, 898, 2707
Eco130I	CCWWGG	3 cut(s)	432, 719, 2132
Eco24I	GRGCYC	1 cut(s)	588
Eco31I	GGTCTC	2 cut(s)	395, 2600
Eco32I	GATATC	1 cut(s)	2350
Eco47I	GGWCC	3 cut(s)	761, 1971, 2116
Eco57I	CTGAAG	6 cut(s)	93, 630, 948, 2858, 3125, 3150
Eco81I	CCTNAGG	1 cut(s)	2925
EcoO109I	RGGNCCY	2 cut(s)	761, 2524
EcoRI	GAATTC	4 cut(s)	316, 427, 2842, 3094
EcoRII	CCWGG	9 cut(s)	8, 805, 832, 1515, 2118, 2194, 2275, 2871, 3362
EcoRV	GATATC	1 cut(s)	2350
EcoT14I	CCWWGG	3 cut(s)	432, 719, 2132
EcoT22I	ATGCAT	2 cut(s)	446, 2070
EcoT38I	GRGCYC	1 cut(s)	588
ErhI	CCWWGG	3 cut(s)	432, 719, 2132
FalI	AAGNNNNNCTT	2 cut(s)	3123, 3155
FaqI	GGGAC	4 cut(s)	1424, 1595, 1973, 2578
FbaI	TGATCA	4 cut(s)	22, 883, 1021, 3109
FokI	GGATG	9 cut(s)	505, 695, 1154, 1193, 1475, 1922, 2135, 2432, 2842
FriOI	GRGCYC	1 cut(s)	588
FspBI	CTAG	4 cut(s)	638, 956, 1904, 2061
FspI	TGCGCA	1 cut(s)	1738
GlaI	GCGC	2 cut(s)	1663, 1738
GsaI	CCCAGC	1 cut(s)	2531
GsuI	CTGGAG	7 cut(s)	218, 591, 1402, 2022, 2298, 3135, 3346
HaeIII	GGCC	6 cut(s)	724, 850, 900, 2525, 2709, 2835
HapII	CCGG	2 cut(s)	198, 204
HhaI	GCGC	2 cut(s)	1664, 1739
Hin6I	GCGC	2 cut(s)	1662, 1737
HinP1I	GCGC	2 cut(s)	1662, 1737
HincII	GTYRAC	1 cut(s)	3117
HindII	GTYRAC	1 cut(s)	3117
HindIII	AAGCTT	2 cut(s)	1981, 2579
HpaI	GTTAAC	1 cut(s)	3117
HpaII	CCGG	2 cut(s)	198, 204
HphI	GGTGA	8 cut(s)	211, 1262, 2234, 3040, 3066, 3210, 3278, 3392
Hpy166II	GTNNAC	8 cut(s)	65, 219, 335, 635, 2116, 2398, 3117, 3250
Hpy8I	GTNNAC	8 cut(s)	65, 219, 335, 635, 2116, 2398, 3117, 3250
Hpy99I	CGWCG	1 cut(s)	1269
HpyAV	CCTTC	9 cut(s)	204, 694, 1616, 1766, 2244, 2382, 2515, 2761, 3240
HpyCH4III	ACNGT	4 cut(s)	389, 1942, 2267, 2395
HpyCH4IV	ACGT	2 cut(s)	1215, 1264
HpySE526I	ACGT	2 cut(s)	1215, 1264
HspAI	GCGC	2 cut(s)	1662, 1737
Ksp22I	TGATCA	4 cut(s)	22, 883, 1021, 3109
KspAI	GTTAAC	1 cut(s)	3117
LguI	GCTCTTC	1 cut(s)	2330
LmnI	GCTCC	2 cut(s)	206, 2003
LweI	GCATC	6 cut(s)	400, 673, 1075, 1333, 3021, 3115
MaeI	CTAG	4 cut(s)	638, 956, 1904, 2061
MaeII	ACGT	2 cut(s)	1215, 1264
MaeIII	GTNAC	5 cut(s)	283, 794, 1268, 1531, 2671
MfeI	CAATTG	1 cut(s)	3460
MflI	RGATCY	4 cut(s)	914, 977, 1417, 2324
MhlI	GDGCHC	2 cut(s)	588, 955
MlsI	TGGCCA	2 cut(s)	724, 2709
MluNI	TGGCCA	2 cut(s)	724, 2709
MlyI	GAGTC	3 cut(s)	7, 860, 1709
MmeI	TCCRAC	7 cut(s)	61, 71, 884, 1005, 2315, 2883, 2949
Mox20I	TGGCCA	2 cut(s)	724, 2709
Mph1103I	ATGCAT	2 cut(s)	446, 2070
MroXI	GAANNNNTTC	2 cut(s)	126, 3138
MscI	TGGCCA	2 cut(s)	724, 2709
MslI	CAYNNNNRTG	2 cut(s)	942, 1302
Msp20I	TGGCCA	2 cut(s)	724, 2709
MspA1I	CMGCKG	5 cut(s)	2111, 2753, 2774, 3122, 3245
MspCI	CTTAAG	1 cut(s)	1978
MspI	CCGG	2 cut(s)	198, 204
MspR9I	CCNGG	9 cut(s)	10, 807, 834, 1517, 2120, 2196, 2277, 2873, 3364
MunI	CAATTG	1 cut(s)	3460
Mva1269I	GAATGC	2 cut(s)	2260, 3070
MvaI	CCWGG	9 cut(s)	10, 807, 834, 1517, 2120, 2196, 2277, 2873, 3364
MvnI	CGCG	1 cut(s)	2103
NcoI	CCATGG	2 cut(s)	719, 2132
NlaIV	GGNNCC	8 cut(s)	123, 202, 208, 819, 979, 1419, 2130, 2526
NmeAIII	GCCGAG	1 cut(s)	2724
NmuCI	GTSAC	2 cut(s)	283, 1268
NsbI	TGCGCA	1 cut(s)	1738
NsiI	ATGCAT	2 cut(s)	446, 2070
NspI	RCATGY	4 cut(s)	444, 748, 802, 2068
NspV	TTCGAA	1 cut(s)	1620
PaeI	GCATGC	2 cut(s)	444, 2068
PagI	TCATGA	2 cut(s)	943, 1404
PaqCI	CACCTGC	1 cut(s)	3085
PciI	ACATGT	1 cut(s)	798
PciSI	GCTCTTC	1 cut(s)	2330
PcsI	WCGNNNNNNNCGW	1 cut(s)	1626
PctI	GAATGC	2 cut(s)	2260, 3070
PdmI	GAANNNNTTC	2 cut(s)	126, 3138
PflMI	CCANNNNNTGG	1 cut(s)	2125
PfoI	TCCNGGA	4 cut(s)	8, 2275, 2871, 3362
PleI	GAGTC	3 cut(s)	7, 860, 1708
PpsI	GAGTC	3 cut(s)	7, 860, 1708
Ppu21I	YACGTR	1 cut(s)	1216
PpuMI	RGGWCCY	1 cut(s)	761
PscI	ACATGT	1 cut(s)	798
Psp5II	RGGWCCY	1 cut(s)	761
Psp6I	CCWGG	9 cut(s)	8, 805, 832, 1515, 2118, 2194, 2275, 2871, 3362
PspFI	CCCAGC	1 cut(s)	2527
PspGI	CCWGG	9 cut(s)	8, 805, 832, 1515, 2118, 2194, 2275, 2871, 3362
PspN4I	GGNNCC	8 cut(s)	123, 202, 208, 819, 979, 1419, 2130, 2526
PspPI	GGNCC	4 cut(s)	761, 1971, 2116, 2524
PspPPI	RGGWCCY	1 cut(s)	761
PstI	CTGCAG	2 cut(s)	2056, 2752
PstNI	CAGNNNCTG	2 cut(s)	353, 653
PsuI	RGATCY	4 cut(s)	914, 977, 1417, 2324
PvuII	CAGCTG	5 cut(s)	2111, 2753, 2774, 3122, 3245
RsaI	GTAC	7 cut(s)	176, 711, 743, 1435, 1751, 2934, 2995
RsaNI	GTAC	7 cut(s)	175, 710, 742, 1434, 1750, 2933, 2994
RseI	CAYNNNNRTG	2 cut(s)	942, 1302
SapI	GCTCTTC	1 cut(s)	2330
Sau96I	GGNCC	4 cut(s)	761, 1971, 2116, 2524
SchI	GAGTC	3 cut(s)	7, 860, 1709
ScrFI	CCNGG	9 cut(s)	10, 807, 834, 1517, 2120, 2196, 2277, 2873, 3364
SduI	GDGCHC	2 cut(s)	588, 955
SfaNI	GCATC	6 cut(s)	400, 673, 1075, 1333, 3021, 3115
SfcI	CTRYAG	2 cut(s)	2052, 2748
SfuI	TTCGAA	1 cut(s)	1620
SinI	GGWCC	3 cut(s)	761, 1971, 2116
SmiMI	CAYNNNNRTG	2 cut(s)	942, 1302
SmlI	CTYRAG	4 cut(s)	272, 705, 1093, 1978
SmoI	CTYRAG	4 cut(s)	272, 705, 1093, 1978
SphI	GCATGC	2 cut(s)	444, 2068
SsiI	CCGC	6 cut(s)	530, 737, 1111, 1453, 2103, 2635
SspMI	CTAG	4 cut(s)	638, 956, 1904, 2061
StyD4I	CCNGG	9 cut(s)	8, 805, 832, 1515, 2118, 2194, 2275, 2871, 3362
StyI	CCWWGG	3 cut(s)	432, 719, 2132
TaaI	ACNGT	4 cut(s)	389, 1942, 2267, 2395
TaiI	ACGT	2 cut(s)	1218, 1267
TaqI	TCGA	2 cut(s)	1620, 3233
TaqII	GACCGA	1 cut(s)	1947
TatI	WGTACW	4 cut(s)	741, 1433, 1749, 2993
TauI	GCSGC	1 cut(s)	532
TscAI	CASTG	9 cut(s)	394, 654, 997, 1309, 1492, 2005, 2188, 2272, 2910
TseFI	GTSAC	2 cut(s)	283, 1268
Tsp45I	GTSAC	2 cut(s)	283, 1268
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	9 cut(s)	394, 654, 997, 1309, 1492, 2005, 2188, 2272, 2910
Van91I	CCANNNNNTGG	1 cut(s)	2125
Vha464I	CTTAAG	1 cut(s)	1978
VpaK11BI	GGWCC	3 cut(s)	761, 1971, 2116
XceI	RCATGY	4 cut(s)	444, 748, 802, 2068
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1280, 2965
XmnI	GAANNNNTTC	2 cut(s)	126, 3138
XspI	CTAG	4 cut(s)	638, 956, 1904, 2061
Zsp2I	ATGCAT	2 cut(s)	446, 2070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.